RNA–Protein interactions for RNA: ENST00000617039.4

TNFRSF11A-206, Transcript of TNF receptor superfamily member 11a, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TNFRSF11A, Length 3,756 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF11A-206ENST00000617039 NISCHQ9Y2I1 1504 aa28.13■■■□□ 2.09
TNFRSF11A-206ENST00000617039 DCAF8L2P0C7V8 631 aa27.29■■□□□ 1.96
TNFRSF11A-206ENST00000617039 SHROOM4Q9ULL8 1493 aa26.57■■□□□ 1.84
TNFRSF11A-206ENST00000617039 SUPT5HO00267 1087 aaKnown RBP26.32■■□□□ 1.8
TNFRSF11A-206ENST00000617039 EHMT2Q96KQ7 1210 aa25.44■■□□□ 1.66
TNFRSF11A-206ENST00000617039 FAM9AQ8IZU1 332 aaPredicted RBP24.77■■□□□ 1.56
TNFRSF11A-206ENST00000617039 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
TNFRSF11A-206ENST00000617039 PCGF6Q9BYE7 350 aa24.32■■□□□ 1.48
TNFRSF11A-206ENST00000617039 LOC105371045A0A1W2PR82 267 aa24.22■■□□□ 1.47
TNFRSF11A-206ENST00000617039 PPARGC1BQ86YN6 1023 aaKnown RBP24.14■■□□□ 1.45
TNFRSF11A-206ENST00000617039 CHIC1Q5VXU3 224 aa24.05■■□□□ 1.44
TNFRSF11A-206ENST00000617039 RANGAP1P46060 587 aaPredicted RBP24.04■■□□□ 1.44
TNFRSF11A-206ENST00000617039 ABCC9O60706 1549 aa23.98■■□□□ 1.43
TNFRSF11A-206ENST00000617039 TRIM41Q8WV44 630 aa23.97■■□□□ 1.43
TNFRSF11A-206ENST00000617039 PABPN1Q86U42 306 aaKnown RBP eCLIP23.76■■□□□ 1.39
TNFRSF11A-206ENST00000617039 ZCCHC6Q5VYS8 1495 aaKnown RBP23.41■■□□□ 1.34
TNFRSF11A-206ENST00000617039 UBTFP17480 764 aaKnown RBP23.38■■□□□ 1.33
TNFRSF11A-206ENST00000617039 SCRIBQ14160 1630 aa23.18■■□□□ 1.3
TNFRSF11A-206ENST00000617039 MYO15BQ96JP2 1530 aa23.14■■□□□ 1.29
TNFRSF11A-206ENST00000617039 ATP1B4Q9UN42 357 aaPredicted RBP23.1■■□□□ 1.29
TNFRSF11A-206ENST00000617039 CCER1Q8TC90 406 aaPredicted RBP23.05■■□□□ 1.28
TNFRSF11A-206ENST00000617039 HRCP23327 699 aa23.03■■□□□ 1.28
TNFRSF11A-206ENST00000617039 APLP2Q06481 763 aa23.01■■□□□ 1.27
TNFRSF11A-206ENST00000617039 TRIM26Q12899 539 aaPredicted RBP22.96■■□□□ 1.27
TNFRSF11A-206ENST00000617039 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.93■■□□□ 1.26
TNFRSF11A-206ENST00000617039 ITGAEP38570 1179 aa22.84■■□□□ 1.25
TNFRSF11A-206ENST00000617039 HNRNPUL2Q1KMD3 747 aaKnown RBP22.84■■□□□ 1.25
TNFRSF11A-206ENST00000617039 CCDC180Q9P1Z9 1646 aa22.82■■□□□ 1.24
TNFRSF11A-206ENST00000617039 CECR2Q9BXF3 1484 aa22.66■■□□□ 1.22
TNFRSF11A-206ENST00000617039 RSF1Q96T23 1441 aaPredicted RBP22.65■■□□□ 1.22
TNFRSF11A-206ENST00000617039 YTHDC1Q96MU7 727 aaKnown RBP22.62■■□□□ 1.21
TNFRSF11A-206ENST00000617039 P3H3Q8IVL6 736 aa22.42■■□□□ 1.18
TNFRSF11A-206ENST00000617039 CSRNP3Q8WYN3 585 aa22.35■■□□□ 1.17
TNFRSF11A-206ENST00000617039 ARID3CA6NKF2 412 aa22.31■■□□□ 1.16
TNFRSF11A-206ENST00000617039 ZEB1P37275 1124 aaPredicted RBP22.3■■□□□ 1.16
TNFRSF11A-206ENST00000617039 RB1CC1Q8TDY2 1594 aa22.21■■□□□ 1.15
TNFRSF11A-206ENST00000617039 MROH2BQ7Z745 1585 aa22.2■■□□□ 1.14
TNFRSF11A-206ENST00000617039 CNGB1Q14028 1251 aaPredicted RBP22.18■■□□□ 1.14
TNFRSF11A-206ENST00000617039 DCAF1Q9Y4B6 1507 aa22.09■■□□□ 1.13
TNFRSF11A-206ENST00000617039 FAM50AQ14320 339 aaKnown RBP22.07■■□□□ 1.12
TNFRSF11A-206ENST00000617039 SOGA1O94964 1423 aa21.98■■□□□ 1.11
TNFRSF11A-206ENST00000617039 DIEXFQ68CQ4 756 aaKnown RBP21.98■■□□□ 1.11
TNFRSF11A-206ENST00000617039 NEUROD1Q13562 356 aa21.97■■□□□ 1.11
TNFRSF11A-206ENST00000617039 ABCC8Q09428 1581 aa21.97■■□□□ 1.11
TNFRSF11A-206ENST00000617039 FBLN2P98095 1184 aa21.96■■□□□ 1.11
TNFRSF11A-206ENST00000617039 WIZO95785 1651 aa21.94■■□□□ 1.1
TNFRSF11A-206ENST00000617039 NACADO15069 1562 aa21.93■■□□□ 1.1
TNFRSF11A-206ENST00000617039 CCDC88BA6NC98 1476 aa21.85■■□□□ 1.09
TNFRSF11A-206ENST00000617039 POLR3GLQ9BT43 218 aa21.82■■□□□ 1.08
TNFRSF11A-206ENST00000617039 CENPBP07199 599 aaPredicted RBP21.8■■□□□ 1.08
TNFRSF11A-206ENST00000617039 RUSC2Q8N2Y8 1516 aa21.74■■□□□ 1.07
TNFRSF11A-206ENST00000617039 CEP162Q5TB80 1403 aa21.72■■□□□ 1.07
TNFRSF11A-206ENST00000617039 HIRIP3Q9BW71 556 aaPredicted RBP21.71■■□□□ 1.07
TNFRSF11A-206ENST00000617039 WRNQ14191 1432 aaPredicted RBP eCLIP21.71■■□□□ 1.07
TNFRSF11A-206ENST00000617039 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
TNFRSF11A-206ENST00000617039 BAZ1BQ9UIG0 1483 aaKnown RBP21.65■■□□□ 1.06
TNFRSF11A-206ENST00000617039 TRIM52Q96A61 297 aa21.6■■□□□ 1.05
TNFRSF11A-206ENST00000617039 CLIP1P30622 1438 aa21.59■■□□□ 1.05
TNFRSF11A-206ENST00000617039 CHIC2Q9UKJ5 165 aa21.57■■□□□ 1.04
TNFRSF11A-206ENST00000617039 GTF3C3Q9Y5Q9 886 aa21.56■■□□□ 1.04
TNFRSF11A-206ENST00000617039 ZNF316A6NFI3 1004 aaPredicted RBP21.52■■□□□ 1.04
TNFRSF11A-206ENST00000617039 ZNF326Q5BKZ1 582 aaKnown RBP21.51■■□□□ 1.03
TNFRSF11A-206ENST00000617039 MYT1LQ9UL68 1186 aa21.51■■□□□ 1.03
TNFRSF11A-206ENST00000617039 KANK4Q5T7N3 995 aaPredicted RBP21.49■■□□□ 1.03
TNFRSF11A-206ENST00000617039 ZNF777Q9ULD5 760 aaPredicted RBP21.49■■□□□ 1.03
TNFRSF11A-206ENST00000617039 BCANQ96GW7 911 aa21.44■■□□□ 1.02
TNFRSF11A-206ENST00000617039 MIER1Q8N108 512 aa21.4■■□□□ 1.02
TNFRSF11A-206ENST00000617039 SENP3-EIF4A1A0A087X0R7 540 aa21.37■■□□□ 1.01
TNFRSF11A-206ENST00000617039 DNAJC5BQ9UF47 199 aa21.37■■□□□ 1.01
TNFRSF11A-206ENST00000617039 TNIKQ9UKE5 1360 aa21.37■■□□□ 1.01
TNFRSF11A-206ENST00000617039 GOLGA3Q08378 1498 aa21.35■■□□□ 1.01
TNFRSF11A-206ENST00000617039 SCAF1Q9H7N4 1312 aaKnown RBP21.31■■□□□ 1
TNFRSF11A-206ENST00000617039 DDX10Q13206 875 aaKnown RBP21.31■■□□□ 1
TNFRSF11A-206ENST00000617039 SIN3AQ96ST3 1273 aa21.3■■□□□ 1
TNFRSF11A-206ENST00000617039 RRP7BPQ9NSQ0 103 aa21.28■■□□□ 1
TNFRSF11A-206ENST00000617039 SMARCA4P51532 1647 aa21.27■■□□□ 1
TNFRSF11A-206ENST00000617039 ATAD2BQ9ULI0 1458 aa21.26■□□□□ 0.99
TNFRSF11A-206ENST00000617039 RAPGEF2Q9Y4G8 1499 aa21.24■□□□□ 0.99
TNFRSF11A-206ENST00000617039 ACIN1Q9UKV3 1341 aaKnown RBP21.24■□□□□ 0.99
TNFRSF11A-206ENST00000617039 TOP2AP11388 1531 aaKnown RBP21.23■□□□□ 0.99
TNFRSF11A-206ENST00000617039 TDRD9Q8NDG6 1382 aaKnown RBP21.22■□□□□ 0.99
TNFRSF11A-206ENST00000617039 SENP3Q9H4L4 574 aaPredicted RBP21.2■□□□□ 0.98
TNFRSF11A-206ENST00000617039 CUX2O14529 1486 aa21.2■□□□□ 0.98
TNFRSF11A-206ENST00000617039 CEP164Q9UPV0 1460 aa21.16■□□□□ 0.98
TNFRSF11A-206ENST00000617039 KIF27Q86VH2 1401 aa21.15■□□□□ 0.98
TNFRSF11A-206ENST00000617039 SMARCA2P51531 1590 aa21.13■□□□□ 0.97
TNFRSF11A-206ENST00000617039 CARMIL1Q5VZK9 1371 aa21.08■□□□□ 0.97
TNFRSF11A-206ENST00000617039 CHMP7Q8WUX9 453 aaPredicted RBP21.08■□□□□ 0.96
TNFRSF11A-206ENST00000617039 MTUS2Q5JR59 1369 aa21.07■□□□□ 0.96
TNFRSF11A-206ENST00000617039 EEA1Q15075 1411 aa21.07■□□□□ 0.96
TNFRSF11A-206ENST00000617039 NEFLP07196 543 aa21.05■□□□□ 0.96
TNFRSF11A-206ENST00000617039 FOXD1Q16676 465 aa21.05■□□□□ 0.96
TNFRSF11A-206ENST00000617039 PELP1Q8IZL8 1130 aaKnown RBP21.01■□□□□ 0.95
TNFRSF11A-206ENST00000617039 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21■□□□□ 0.95
TNFRSF11A-206ENST00000617039 KCNH8Q96L42 1107 aa20.99■□□□□ 0.95
TNFRSF11A-206ENST00000617039 KDM2AQ9Y2K7 1162 aa20.97■□□□□ 0.95
TNFRSF11A-206ENST00000617039 SLC4A1APQ9BWU0 796 aaKnown RBP20.96■□□□□ 0.95
TNFRSF11A-206ENST00000617039 VPS8Q8N3P4 1428 aa20.95■□□□□ 0.94
TNFRSF11A-206ENST00000617039 SALL2Q9Y467 1007 aaPredicted RBP20.93■□□□□ 0.94
TNFRSF11A-206ENST00000617039 ANP32CO43423 234 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 154.3 ms