RNA–Protein interactions for RNA: ENST00000614526.1

LIG4-205, Transcript of DNA ligase 4, humanhuman

TSL 2 BASIC

Gene LIG4, Length 3,884 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-205ENST00000614526 NISCHQ9Y2I1 1504 aa7.45□□□□□ -1.22
LIG4-205ENST00000614526 DCAF8L2P0C7V8 631 aa6.44□□□□□ -1.38
LIG4-205ENST00000614526 SHROOM4Q9ULL8 1493 aa6.37□□□□□ -1.39
LIG4-205ENST00000614526 CCDC180Q9P1Z9 1646 aa6.34□□□□□ -1.39
LIG4-205ENST00000614526 ZCCHC6Q5VYS8 1495 aaKnown RBP6.25□□□□□ -1.41
LIG4-205ENST00000614526 ABCC9O60706 1549 aa6.19□□□□□ -1.42
LIG4-205ENST00000614526 SUPT5HO00267 1087 aaKnown RBP6.18□□□□□ -1.42
LIG4-205ENST00000614526 DCAF1Q9Y4B6 1507 aa6.04□□□□□ -1.44
LIG4-205ENST00000614526 SCRIBQ14160 1630 aa6.02□□□□□ -1.45
LIG4-205ENST00000614526 NACADO15069 1562 aa5.95□□□□□ -1.46
LIG4-205ENST00000614526 PABPN1Q86U42 306 aaKnown RBP eCLIP5.94□□□□□ -1.46
LIG4-205ENST00000614526 MYO15BQ96JP2 1530 aa5.93□□□□□ -1.46
LIG4-205ENST00000614526 RB1CC1Q8TDY2 1594 aa5.91□□□□□ -1.46
LIG4-205ENST00000614526 CECR2Q9BXF3 1484 aa5.88□□□□□ -1.47
LIG4-205ENST00000614526 RSF1Q96T23 1441 aaPredicted RBP5.86□□□□□ -1.47
LIG4-205ENST00000614526 CHIC1Q5VXU3 224 aa5.85□□□□□ -1.47
LIG4-205ENST00000614526 MROH2BQ7Z745 1585 aa5.81□□□□□ -1.48
LIG4-205ENST00000614526 UNC13AQ9UPW8 1703 aa5.78□□□□□ -1.48
LIG4-205ENST00000614526 WIZO95785 1651 aa5.76□□□□□ -1.49
LIG4-205ENST00000614526 BICRAQ9NZM4 1560 aa5.75□□□□□ -1.49
LIG4-205ENST00000614526 EHMT2Q96KQ7 1210 aa5.75□□□□□ -1.49
LIG4-205ENST00000614526 FAM9AQ8IZU1 332 aaPredicted RBP5.74□□□□□ -1.49
LIG4-205ENST00000614526 LOC105371045A0A1W2PR82 267 aa5.73□□□□□ -1.49
LIG4-205ENST00000614526 TRIM41Q8WV44 630 aa5.73□□□□□ -1.49
LIG4-205ENST00000614526 BAZ1AQ9NRL2 1556 aaPredicted RBP5.72□□□□□ -1.49
LIG4-205ENST00000614526 SMARCA4P51532 1647 aa5.7□□□□□ -1.5
LIG4-205ENST00000614526 CCDC88BA6NC98 1476 aa5.65□□□□□ -1.5
LIG4-205ENST00000614526 TOP2AP11388 1531 aaKnown RBP5.63□□□□□ -1.51
LIG4-205ENST00000614526 ATAD2BQ9ULI0 1458 aa5.63□□□□□ -1.51
LIG4-205ENST00000614526 BAZ1BQ9UIG0 1483 aaKnown RBP5.61□□□□□ -1.51
LIG4-205ENST00000614526 SMARCA2P51531 1590 aa5.61□□□□□ -1.51
LIG4-205ENST00000614526 ABCC8Q09428 1581 aa5.6□□□□□ -1.51
LIG4-205ENST00000614526 EIF4G1Q04637 1599 aaKnown RBP5.59□□□□□ -1.51
LIG4-205ENST00000614526 PEG3Q9GZU2 1588 aa5.55□□□□□ -1.52
LIG4-205ENST00000614526 DNAJC5BQ9UF47 199 aa5.55□□□□□ -1.52
LIG4-205ENST00000614526 NCAPD3P42695 1498 aa5.53□□□□□ -1.52
LIG4-205ENST00000614526 PPARGC1BQ86YN6 1023 aaKnown RBP5.53□□□□□ -1.52
LIG4-205ENST00000614526 PCGF6Q9BYE7 350 aa5.53□□□□□ -1.52
LIG4-205ENST00000614526 SOGA1O94964 1423 aa5.53□□□□□ -1.52
LIG4-205ENST00000614526 RANGAP1P46060 587 aaPredicted RBP5.52□□□□□ -1.53
LIG4-205ENST00000614526 WRNQ14191 1432 aaPredicted RBP eCLIP5.52□□□□□ -1.53
LIG4-205ENST00000614526 RUSC2Q8N2Y8 1516 aa5.51□□□□□ -1.53
LIG4-205ENST00000614526 CC2D2AQ9P2K1 1620 aa5.51□□□□□ -1.53
LIG4-205ENST00000614526 UBTFP17480 764 aaKnown RBP5.5□□□□□ -1.53
LIG4-205ENST00000614526 TTBK1Q5TCY1 1321 aaPredicted RBP5.5□□□□□ -1.53
LIG4-205ENST00000614526 CSRNP3Q8WYN3 585 aa5.49□□□□□ -1.53
LIG4-205ENST00000614526 HMGXB3Q12766 1538 aa5.48□□□□□ -1.53
LIG4-205ENST00000614526 AEBP2Q6ZN18 517 aaPredicted RBP5.47□□□□□ -1.53
LIG4-205ENST00000614526 SYNJ1O43426 1573 aa5.47□□□□□ -1.53
LIG4-205ENST00000614526 CADPSQ9ULU8 1353 aa5.45□□□□□ -1.54
LIG4-205ENST00000614526 NESP48681 1621 aa5.45□□□□□ -1.54
LIG4-205ENST00000614526 CFTRP13569 1480 aa5.44□□□□□ -1.54
LIG4-205ENST00000614526 CUX1P39880 1505 aa5.41□□□□□ -1.54
LIG4-205ENST00000614526 TRIM26Q12899 539 aaPredicted RBP5.41□□□□□ -1.54
LIG4-205ENST00000614526 FANCD2Q9BXW9 1451 aa5.39□□□□□ -1.55
LIG4-205ENST00000614526 CEP162Q5TB80 1403 aa5.39□□□□□ -1.55
LIG4-205ENST00000614526 EEA1Q15075 1411 aa5.39□□□□□ -1.55
LIG4-205ENST00000614526 TOP2BQ02880 1626 aa5.39□□□□□ -1.55
LIG4-205ENST00000614526 RAPGEF2Q9Y4G8 1499 aa5.38□□□□□ -1.55
LIG4-205ENST00000614526 TNIKQ9UKE5 1360 aa5.38□□□□□ -1.55
LIG4-205ENST00000614526 GOLGA3Q08378 1498 aa5.38□□□□□ -1.55
LIG4-205ENST00000614526 CUX2O14529 1486 aa5.37□□□□□ -1.55
LIG4-205ENST00000614526 RAD54L2Q9Y4B4 1467 aa5.36□□□□□ -1.55
LIG4-205ENST00000614526 KIF27Q86VH2 1401 aa5.36□□□□□ -1.55
LIG4-205ENST00000614526 FGD5Q6ZNL6 1462 aa5.36□□□□□ -1.55
LIG4-205ENST00000614526 CEP164Q9UPV0 1460 aa5.36□□□□□ -1.55
LIG4-205ENST00000614526 BIVM-ERCC5R4GMW8 1640 aa5.34□□□□□ -1.55
LIG4-205ENST00000614526 P3H3Q8IVL6 736 aa5.34□□□□□ -1.55
LIG4-205ENST00000614526 CLIP1P30622 1438 aa5.34□□□□□ -1.55
LIG4-205ENST00000614526 TDRD9Q8NDG6 1382 aaKnown RBP5.34□□□□□ -1.55
LIG4-205ENST00000614526 HRCP23327 699 aa5.33□□□□□ -1.56
LIG4-205ENST00000614526 IGF1RP08069 1367 aa5.33□□□□□ -1.56
LIG4-205ENST00000614526 PDS5BQ9NTI5 1447 aa5.33□□□□□ -1.56
LIG4-205ENST00000614526 APLP2Q06481 763 aa5.32□□□□□ -1.56
LIG4-205ENST00000614526 ATP1B4Q9UN42 357 aaPredicted RBP5.32□□□□□ -1.56
LIG4-205ENST00000614526 TOPBP1Q92547 1522 aa5.32□□□□□ -1.56
LIG4-205ENST00000614526 CARMIL1Q5VZK9 1371 aa5.32□□□□□ -1.56
LIG4-205ENST00000614526 POLA1P09884 1462 aaPredicted RBP5.32□□□□□ -1.56
LIG4-205ENST00000614526 URB2Q14146 1524 aaKnown RBP5.31□□□□□ -1.56
LIG4-205ENST00000614526 PRXQ9BXM0 1461 aa5.31□□□□□ -1.56
LIG4-205ENST00000614526 LAMC3Q9Y6N6 1575 aa5.3□□□□□ -1.56
LIG4-205ENST00000614526 KIF21BO75037 1637 aa5.3□□□□□ -1.56
LIG4-205ENST00000614526 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.29□□□□□ -1.56
LIG4-205ENST00000614526 DNMBPQ6XZF7 1577 aa5.29□□□□□ -1.56
LIG4-205ENST00000614526 PRDM2Q13029 1718 aa5.29□□□□□ -1.56
LIG4-205ENST00000614526 HNRNPUL2Q1KMD3 747 aaKnown RBP5.29□□□□□ -1.56
LIG4-205ENST00000614526 KIF21AQ7Z4S6 1674 aa5.28□□□□□ -1.56
LIG4-205ENST00000614526 ERCC6Q03468 1493 aa5.28□□□□□ -1.56
LIG4-205ENST00000614526 KANK4Q5T7N3 995 aaPredicted RBP5.27□□□□□ -1.57
LIG4-205ENST00000614526 AQRO60306 1485 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIG4-205ENST00000614526 FBLN2P98095 1184 aa5.26□□□□□ -1.57
LIG4-205ENST00000614526 VPS8Q8N3P4 1428 aa5.26□□□□□ -1.57
LIG4-205ENST00000614526 ABCA10Q8WWZ4 1543 aa5.26□□□□□ -1.57
LIG4-205ENST00000614526 ARAP1Q96P48 1450 aa5.26□□□□□ -1.57
LIG4-205ENST00000614526 ERICH3Q5RHP9 1530 aa5.25□□□□□ -1.57
LIG4-205ENST00000614526 CCER1Q8TC90 406 aaPredicted RBP5.25□□□□□ -1.57
LIG4-205ENST00000614526 GAPVD1Q14C86 1478 aa5.25□□□□□ -1.57
LIG4-205ENST00000614526 ARID3CA6NKF2 412 aa5.25□□□□□ -1.57
LIG4-205ENST00000614526 ITGAEP38570 1179 aa5.25□□□□□ -1.57
LIG4-205ENST00000614526 ARHGAP35Q9NRY4 1499 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms