RNA–Protein interactions for RNA: ENST00000607494.5

LINC00458-206, long intergenic non-protein coding RNA 458, humanhuman

TSL 3 BASIC

Gene LINC00458, Length 849 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-206ENST00000607494 AEBP2Q6ZN18 517 aaPredicted RBP34.73■■■■□ 3.15
LINC00458-206ENST00000607494 CHIC1Q5VXU3 224 aa33.11■■■□□ 2.89
LINC00458-206ENST00000607494 SENP3Q9H4L4 574 aaPredicted RBP29.43■■■□□ 2.3
LINC00458-206ENST00000607494 PHF23Q9BUL5 403 aaPredicted RBP29.15■■■□□ 2.26
LINC00458-206ENST00000607494 FOXD1Q16676 465 aa27.51■■□□□ 1.99
LINC00458-206ENST00000607494 PLPPR3Q6T4P5 718 aa26.51■■□□□ 1.83
LINC00458-206ENST00000607494 PPP6R1Q9UPN7 881 aa25.96■■□□□ 1.75
LINC00458-206ENST00000607494 ADRA2BP18089 450 aa25.88■■□□□ 1.73
LINC00458-206ENST00000607494 PIAS4Q8N2W9 510 aaPredicted RBP25.75■■□□□ 1.71
LINC00458-206ENST00000607494 MSH5O43196 834 aa25.51■■□□□ 1.67
LINC00458-206ENST00000607494 POTEDQ86YR6 584 aa24.73■■□□□ 1.55
LINC00458-206ENST00000607494 MAPK8IP2Q13387 824 aaPredicted RBP23.72■■□□□ 1.39
LINC00458-206ENST00000607494 SCAF1Q9H7N4 1312 aaKnown RBP23.46■■□□□ 1.35
LINC00458-206ENST00000607494 DMRT2Q9Y5R5 561 aa23.4■■□□□ 1.34
LINC00458-206ENST00000607494 PPP4R3CPQ6ZMV5 832 aa23.33■■□□□ 1.33
LINC00458-206ENST00000607494 CNKSR2Q8WXI2 1034 aa22.77■■□□□ 1.24
LINC00458-206ENST00000607494 HOXD11P31277 338 aaPredicted RBP22.62■■□□□ 1.21
LINC00458-206ENST00000607494 DCAF8L1A6NGE4 600 aa22.51■■□□□ 1.19
LINC00458-206ENST00000607494 RNF216Q9NWF9 866 aaPredicted RBP22.5■■□□□ 1.19
LINC00458-206ENST00000607494 NCBP3Q53F19 620 aaKnown RBP22.39■■□□□ 1.17
LINC00458-206ENST00000607494 NPM3O75607 178 aaKnown RBP22.21■■□□□ 1.15
LINC00458-206ENST00000607494 KCNA4P22459 653 aa22.05■■□□□ 1.12
LINC00458-206ENST00000607494 RNF39Q9H2S5 420 aa21.86■■□□□ 1.09
LINC00458-206ENST00000607494 CACNB1Q02641 598 aaPredicted RBP21.82■■□□□ 1.08
LINC00458-206ENST00000607494 DNAJC5BQ9UF47 199 aa21.65■■□□□ 1.06
LINC00458-206ENST00000607494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.58■■□□□ 1.05
LINC00458-206ENST00000607494 C1QBPQ07021 282 aaKnown RBP21.48■■□□□ 1.03
LINC00458-206ENST00000607494 U3KPZ7 1027 aaPredicted RBP21.21■□□□□ 0.99
LINC00458-206ENST00000607494 SLC4A2P04920 1241 aa21.17■□□□□ 0.98
LINC00458-206ENST00000607494 SPINK5Q9NQ38 1064 aaPredicted RBP20.88■□□□□ 0.93
LINC00458-206ENST00000607494 SLC4A1APQ9BWU0 796 aaKnown RBP20.79■□□□□ 0.92
LINC00458-206ENST00000607494 CAPN15O75808 1086 aa20.76■□□□□ 0.91
LINC00458-206ENST00000607494 DSG3P32926 999 aa20.57■□□□□ 0.88
LINC00458-206ENST00000607494 TRHP20396 242 aaPredicted RBP20.52■□□□□ 0.88
LINC00458-206ENST00000607494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.5■□□□□ 0.87
LINC00458-206ENST00000607494 HNRNPUL2Q1KMD3 747 aaKnown RBP20.5■□□□□ 0.87
LINC00458-206ENST00000607494 MYCNP04198 464 aaPredicted RBP20.47■□□□□ 0.87
LINC00458-206ENST00000607494 SAMD1Q6SPF0 538 aaPredicted RBP20.45■□□□□ 0.86
LINC00458-206ENST00000607494 APLP2Q06481 763 aa20.42■□□□□ 0.86
LINC00458-206ENST00000607494 FOXD4L1Q9NU39 408 aa20.41■□□□□ 0.86
LINC00458-206ENST00000607494 ABCB7O75027 752 aa20.39■□□□□ 0.85
LINC00458-206ENST00000607494 ZNF219Q9P2Y4 722 aaPredicted RBP20.37■□□□□ 0.85
LINC00458-206ENST00000607494 ZBTB22O15209 634 aa20.33■□□□□ 0.85
LINC00458-206ENST00000607494 ATF5Q9Y2D1 282 aaPredicted RBP20.13■□□□□ 0.81
LINC00458-206ENST00000607494 POLA2Q14181 598 aa19.98■□□□□ 0.79
LINC00458-206ENST00000607494 ATXN8OSP0DMR3 200 aa19.65■□□□□ 0.74
LINC00458-206ENST00000607494 CSRNP3Q8WYN3 585 aa19.54■□□□□ 0.72
LINC00458-206ENST00000607494 RBM42Q9BTD8 480 aaKnown RBP19.51■□□□□ 0.71
LINC00458-206ENST00000607494 EHMT2Q96KQ7 1210 aa19.49■□□□□ 0.71
LINC00458-206ENST00000607494 ZBTB12Q9Y330 459 aaPredicted RBP19.46■□□□□ 0.71
LINC00458-206ENST00000607494 OSCARQ8IYS5 282 aa19.41■□□□□ 0.7
LINC00458-206ENST00000607494 POTEHQ6S545 545 aa19.39■□□□□ 0.69
LINC00458-206ENST00000607494 MKRN4PQ13434 485 aaPredicted RBP19.18■□□□□ 0.66
LINC00458-206ENST00000607494 FBLN2P98095 1184 aa19.15■□□□□ 0.66
LINC00458-206ENST00000607494 AKT1S1Q96B36 256 aa19.15■□□□□ 0.66
LINC00458-206ENST00000607494 CHRDL2Q6WN34 429 aa19.08■□□□□ 0.64
LINC00458-206ENST00000607494 REM2Q8IYK8 340 aaPredicted RBP19.04■□□□□ 0.64
LINC00458-206ENST00000607494 SPDYE2BA6NHP3 402 aa18.94■□□□□ 0.62
LINC00458-206ENST00000607494 SPDYE6P0CI01 402 aa18.94■□□□□ 0.62
LINC00458-206ENST00000607494 SPDYE2Q495Y8 402 aa18.94■□□□□ 0.62
LINC00458-206ENST00000607494 PITPNM1O00562 1244 aa18.87■□□□□ 0.61
LINC00458-206ENST00000607494 ZNF692Q9BU19 519 aaPredicted RBP18.8■□□□□ 0.6
LINC00458-206ENST00000607494 SSUH2Q9Y2M2 353 aa18.77■□□□□ 0.6
LINC00458-206ENST00000607494 PIP4P2Q8N4L2 257 aa18.72■□□□□ 0.59
LINC00458-206ENST00000607494 CLEC11AQ9Y240 323 aa18.61■□□□□ 0.57
LINC00458-206ENST00000607494 FXR2P51116 673 aaKnown RBP eCLIP18.6■□□□□ 0.57
LINC00458-206ENST00000607494 PABPN1Q86U42 306 aaKnown RBP eCLIP18.57■□□□□ 0.56
LINC00458-206ENST00000607494 SPDYE1Q8NFV5 336 aaPredicted RBP18.56■□□□□ 0.56
LINC00458-206ENST00000607494 PRKAR2AP13861 404 aaKnown RBP18.37■□□□□ 0.53
LINC00458-206ENST00000607494 SPDYE4A6NLX3 237 aa18.33■□□□□ 0.52
LINC00458-206ENST00000607494 HAX1O00165 279 aa18.29■□□□□ 0.52
LINC00458-206ENST00000607494 CHADLQ6NUI6 762 aa18.29■□□□□ 0.52
LINC00458-206ENST00000607494 PRR29P0C7W0 189 aa18.27■□□□□ 0.52
LINC00458-206ENST00000607494 SP7Q8TDD2 431 aaPredicted RBP18.21■□□□□ 0.51
LINC00458-206ENST00000607494 EVX2Q03828 476 aa18.18■□□□□ 0.5
LINC00458-206ENST00000607494 C19orf67A6NJJ6 358 aa17.99■□□□□ 0.47
LINC00458-206ENST00000607494 STAG3Q9UJ98 1225 aa17.97■□□□□ 0.47
LINC00458-206ENST00000607494 FARP1Q9Y4F1 1045 aaPredicted RBP17.94■□□□□ 0.46
LINC00458-206ENST00000607494 CREBZFQ9NS37 354 aa17.93■□□□□ 0.46
LINC00458-206ENST00000607494 PROM2Q8N271 834 aa17.9■□□□□ 0.46
LINC00458-206ENST00000607494 CD44P16070 742 aaKnown RBP17.79■□□□□ 0.44
LINC00458-206ENST00000607494 FKBP8Q14318 412 aa17.72■□□□□ 0.43
LINC00458-206ENST00000607494 GABBR2O75899 941 aa17.7■□□□□ 0.42
LINC00458-206ENST00000607494 MNX1P50219 401 aaPredicted RBP17.66■□□□□ 0.42
LINC00458-206ENST00000607494 ZRANB1Q9UGI0 708 aa17.58■□□□□ 0.4
LINC00458-206ENST00000607494 ZNF579Q8NAF0 562 aaKnown RBP17.5■□□□□ 0.39
LINC00458-206ENST00000607494 NPM1P06748 294 aaKnown RBP eCLIP17.49■□□□□ 0.39
LINC00458-206ENST00000607494 MIER1Q8N108 512 aa17.44■□□□□ 0.38
LINC00458-206ENST00000607494 PHF12Q96QT6 1004 aa17.43■□□□□ 0.38
LINC00458-206ENST00000607494 PAK3O75914 559 aaPredicted RBP17.4■□□□□ 0.38
LINC00458-206ENST00000607494 POTEIP0CG38 1075 aa17.39■□□□□ 0.37
LINC00458-206ENST00000607494 GALR2O43603 387 aaPredicted RBP17.36■□□□□ 0.37
LINC00458-206ENST00000607494 PLCD3Q8N3E9 789 aa17.34■□□□□ 0.37
LINC00458-206ENST00000607494 TSPYL2Q9H2G4 693 aaPredicted RBP17.33■□□□□ 0.36
LINC00458-206ENST00000607494 PLEKHG5O94827 1062 aa17.3■□□□□ 0.36
LINC00458-206ENST00000607494 CLCN6P51797 869 aa17.27■□□□□ 0.36
LINC00458-206ENST00000607494 RASEFQ8IZ41 740 aa17.24■□□□□ 0.35
LINC00458-206ENST00000607494 DCBLD2Q96PD2 775 aa17.23■□□□□ 0.35
LINC00458-206ENST00000607494 CCDC61Q9Y6R9 512 aa17.19■□□□□ 0.34
LINC00458-206ENST00000607494 MS4A3Q96HJ5 214 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms