RNA–Protein interactions for RNA: ENST00000606785.1

LINC00397-202, long intergenic non-protein coding RNA 397, humanhuman

TSL 5 BASIC

Gene LINC00397, Length 409 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00397-202ENST00000606785 AEBP2Q6ZN18 517 aaPredicted RBP23.92■■□□□ 1.42
LINC00397-202ENST00000606785 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
LINC00397-202ENST00000606785 SENP3Q9H4L4 574 aaPredicted RBP20.55■□□□□ 0.88
LINC00397-202ENST00000606785 PHF23Q9BUL5 403 aaPredicted RBP20.17■□□□□ 0.82
LINC00397-202ENST00000606785 FOXD1Q16676 465 aa19.16■□□□□ 0.66
LINC00397-202ENST00000606785 POTEDQ86YR6 584 aa18.41■□□□□ 0.54
LINC00397-202ENST00000606785 MSH5O43196 834 aa18.16■□□□□ 0.5
LINC00397-202ENST00000606785 PIAS4Q8N2W9 510 aaPredicted RBP17.8■□□□□ 0.44
LINC00397-202ENST00000606785 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
LINC00397-202ENST00000606785 PPP6R1Q9UPN7 881 aa17.53■□□□□ 0.4
LINC00397-202ENST00000606785 ADRA2BP18089 450 aa17.45■□□□□ 0.38
LINC00397-202ENST00000606785 DMRT2Q9Y5R5 561 aa16.22■□□□□ 0.19
LINC00397-202ENST00000606785 MAPK8IP2Q13387 824 aaPredicted RBP16.14■□□□□ 0.17
LINC00397-202ENST00000606785 SCAF1Q9H7N4 1312 aaKnown RBP16.06■□□□□ 0.16
LINC00397-202ENST00000606785 CACNB1Q02641 598 aaPredicted RBP15.8■□□□□ 0.12
LINC00397-202ENST00000606785 DCAF8L1A6NGE4 600 aa15.51■□□□□ 0.07
LINC00397-202ENST00000606785 HOXD11P31277 338 aaPredicted RBP15.46■□□□□ 0.07
LINC00397-202ENST00000606785 RNF39Q9H2S5 420 aa15.43■□□□□ 0.06
LINC00397-202ENST00000606785 PPP4R3CPQ6ZMV5 832 aa15.4■□□□□ 0.06
LINC00397-202ENST00000606785 CNKSR2Q8WXI2 1034 aa15.24■□□□□ 0.03
LINC00397-202ENST00000606785 RNF216Q9NWF9 866 aaPredicted RBP15.23■□□□□ 0.03
LINC00397-202ENST00000606785 C1QBPQ07021 282 aaKnown RBP15.2■□□□□ 0.02
LINC00397-202ENST00000606785 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
LINC00397-202ENST00000606785 KCNA4P22459 653 aa14.82□□□□□ -0.04
LINC00397-202ENST00000606785 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
LINC00397-202ENST00000606785 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.06
LINC00397-202ENST00000606785 EHMT2Q96KQ7 1210 aa14.59□□□□□ -0.07
LINC00397-202ENST00000606785 NPM3O75607 178 aaKnown RBP14.46□□□□□ -0.09
LINC00397-202ENST00000606785 POTEHQ6S545 545 aa14.35□□□□□ -0.11
LINC00397-202ENST00000606785 U3KPZ7 1027 aaPredicted RBP14.34□□□□□ -0.11
LINC00397-202ENST00000606785 DSG3P32926 999 aa14.28□□□□□ -0.12
LINC00397-202ENST00000606785 CAPN15O75808 1086 aa14.25□□□□□ -0.13
LINC00397-202ENST00000606785 SLC4A1APQ9BWU0 796 aaKnown RBP14.24□□□□□ -0.13
LINC00397-202ENST00000606785 SPINK5Q9NQ38 1064 aaPredicted RBP14.23□□□□□ -0.13
LINC00397-202ENST00000606785 CSRNP3Q8WYN3 585 aa14.13□□□□□ -0.15
LINC00397-202ENST00000606785 APLP2Q06481 763 aa13.97□□□□□ -0.17
LINC00397-202ENST00000606785 ZNF219Q9P2Y4 722 aaPredicted RBP13.93□□□□□ -0.18
LINC00397-202ENST00000606785 SLC4A2P04920 1241 aa13.92□□□□□ -0.18
LINC00397-202ENST00000606785 TRHP20396 242 aaPredicted RBP13.89□□□□□ -0.19
LINC00397-202ENST00000606785 ABCB7O75027 752 aa13.86□□□□□ -0.19
LINC00397-202ENST00000606785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.84□□□□□ -0.19
LINC00397-202ENST00000606785 HNRNPUL2Q1KMD3 747 aaKnown RBP13.84□□□□□ -0.19
LINC00397-202ENST00000606785 SAMD1Q6SPF0 538 aaPredicted RBP13.72□□□□□ -0.21
LINC00397-202ENST00000606785 RBM42Q9BTD8 480 aaKnown RBP13.69□□□□□ -0.22
LINC00397-202ENST00000606785 ZBTB22O15209 634 aa13.66□□□□□ -0.22
LINC00397-202ENST00000606785 CHRDL2Q6WN34 429 aa13.52□□□□□ -0.25
LINC00397-202ENST00000606785 FOXD4L1Q9NU39 408 aa13.46□□□□□ -0.25
LINC00397-202ENST00000606785 POLA2Q14181 598 aa13.43□□□□□ -0.26
LINC00397-202ENST00000606785 MYCNP04198 464 aaPredicted RBP13.42□□□□□ -0.26
LINC00397-202ENST00000606785 AKT1S1Q96B36 256 aa13.27□□□□□ -0.29
LINC00397-202ENST00000606785 SP7Q8TDD2 431 aaPredicted RBP13.26□□□□□ -0.29
LINC00397-202ENST00000606785 ZBTB12Q9Y330 459 aaPredicted RBP13.21□□□□□ -0.29
LINC00397-202ENST00000606785 REM2Q8IYK8 340 aaPredicted RBP13.11□□□□□ -0.31
LINC00397-202ENST00000606785 PIP4P2Q8N4L2 257 aa13.1□□□□□ -0.31
LINC00397-202ENST00000606785 ATF5Q9Y2D1 282 aaPredicted RBP13.07□□□□□ -0.32
LINC00397-202ENST00000606785 OSCARQ8IYS5 282 aa13.03□□□□□ -0.32
LINC00397-202ENST00000606785 PITPNM1O00562 1244 aa12.98□□□□□ -0.33
LINC00397-202ENST00000606785 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
LINC00397-202ENST00000606785 HAX1O00165 279 aa12.96□□□□□ -0.33
LINC00397-202ENST00000606785 ATXN8OSP0DMR3 200 aa12.95□□□□□ -0.34
LINC00397-202ENST00000606785 AMER1Q5JTC6 1135 aaPredicted RBP12.8□□□□□ -0.36
LINC00397-202ENST00000606785 RTN4Q9NQC3 1192 aaKnown RBP12.77□□□□□ -0.37
LINC00397-202ENST00000606785 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
LINC00397-202ENST00000606785 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
LINC00397-202ENST00000606785 SPDYE2Q495Y8 402 aa12.74□□□□□ -0.37
LINC00397-202ENST00000606785 EVX2Q03828 476 aa12.73□□□□□ -0.37
LINC00397-202ENST00000606785 FKBP8Q14318 412 aa12.73□□□□□ -0.37
LINC00397-202ENST00000606785 FBLN2P98095 1184 aa12.67□□□□□ -0.38
LINC00397-202ENST00000606785 SLC24A1O60721 1099 aa12.65□□□□□ -0.38
LINC00397-202ENST00000606785 PRKAR2AP13861 404 aaKnown RBP12.63□□□□□ -0.39
LINC00397-202ENST00000606785 SPDYE1Q8NFV5 336 aaPredicted RBP12.62□□□□□ -0.39
LINC00397-202ENST00000606785 C19orf67A6NJJ6 358 aa12.57□□□□□ -0.4
LINC00397-202ENST00000606785 CLEC11AQ9Y240 323 aa12.56□□□□□ -0.4
LINC00397-202ENST00000606785 SSUH2Q9Y2M2 353 aa12.51□□□□□ -0.41
LINC00397-202ENST00000606785 MKRN4PQ13434 485 aaPredicted RBP12.47□□□□□ -0.41
LINC00397-202ENST00000606785 ZNF692Q9BU19 519 aaPredicted RBP12.47□□□□□ -0.41
LINC00397-202ENST00000606785 GABBR2O75899 941 aa12.46□□□□□ -0.41
LINC00397-202ENST00000606785 LHX8Q68G74 356 aa12.41□□□□□ -0.42
LINC00397-202ENST00000606785 CHADLQ6NUI6 762 aa12.35□□□□□ -0.43
LINC00397-202ENST00000606785 PRR29P0C7W0 189 aa12.32□□□□□ -0.44
LINC00397-202ENST00000606785 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
LINC00397-202ENST00000606785 CLCN6P51797 869 aa12.22□□□□□ -0.45
LINC00397-202ENST00000606785 CD44P16070 742 aaKnown RBP12.21□□□□□ -0.45
LINC00397-202ENST00000606785 POTEIP0CG38 1075 aa12.18□□□□□ -0.46
LINC00397-202ENST00000606785 FARP1Q9Y4F1 1045 aaPredicted RBP12.17□□□□□ -0.46
LINC00397-202ENST00000606785 FBXO3Q9UK99 471 aa12.11□□□□□ -0.47
LINC00397-202ENST00000606785 SPDYE4A6NLX3 237 aa12.08□□□□□ -0.48
LINC00397-202ENST00000606785 DCBLD2Q96PD2 775 aa12.05□□□□□ -0.48
LINC00397-202ENST00000606785 ZNF579Q8NAF0 562 aaKnown RBP12.04□□□□□ -0.48
LINC00397-202ENST00000606785 PROM2Q8N271 834 aa12□□□□□ -0.49
LINC00397-202ENST00000606785 ZRANB1Q9UGI0 708 aa11.96□□□□□ -0.49
LINC00397-202ENST00000606785 PLSCR2Q9NRY7 297 aa11.94□□□□□ -0.5
LINC00397-202ENST00000606785 VASPP50552 380 aaPredicted RBP11.92□□□□□ -0.5
LINC00397-202ENST00000606785 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
LINC00397-202ENST00000606785 STAG3Q9UJ98 1225 aa11.9□□□□□ -0.5
LINC00397-202ENST00000606785 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
LINC00397-202ENST00000606785 OTUD5Q96G74 571 aa11.83□□□□□ -0.52
LINC00397-202ENST00000606785 PAK3O75914 559 aaPredicted RBP11.81□□□□□ -0.52
LINC00397-202ENST00000606785 IFNLR1Q8IU57 520 aaPredicted RBP11.8□□□□□ -0.52
LINC00397-202ENST00000606785 PLCB2Q00722 1185 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms