RNA–Protein interactions for RNA: ENST00000606525.5

NECAB3-218, Transcript of N-terminal EF-hand calcium binding protein 3, human

TSL 2

Gene NECAB3, Length 2,010 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAB3-218	ENST00000606525	NISCH	Q9Y2I1	1504 aa		39.81	■■■■□ 3.96
NECAB3-218	ENST00000606525	CCDC180	Q9P1Z9	1646 aa		34.13	■■■■□ 3.05
NECAB3-218	ENST00000606525	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.63	■■■□□ 2.97
NECAB3-218	ENST00000606525	SHROOM4	Q9ULL8	1493 aa		33.4	■■■□□ 2.94
NECAB3-218	ENST00000606525	DCAF1	Q9Y4B6	1507 aa		32.8	■■■□□ 2.84
NECAB3-218	ENST00000606525	DCAF8L2	P0C7V8	631 aa		32.75	■■■□□ 2.83
NECAB3-218	ENST00000606525	SUPT5H	O00267	1087 aa	Known RBP	32.6	■■■□□ 2.81
NECAB3-218	ENST00000606525	MYO15B	Q96JP2	1530 aa		32.01	■■■□□ 2.71
NECAB3-218	ENST00000606525	SCRIB	Q14160	1630 aa		31.72	■■■□□ 2.67
NECAB3-218	ENST00000606525	ABCC9	O60706	1549 aa		31.67	■■■□□ 2.66
NECAB3-218	ENST00000606525	CHIC1	Q5VXU3	224 aa		31.66	■■■□□ 2.66
NECAB3-218	ENST00000606525	NACAD	O15069	1562 aa		31.58	■■■□□ 2.65
NECAB3-218	ENST00000606525	RSF1	Q96T23	1441 aa	Predicted RBP	31.32	■■■□□ 2.6
NECAB3-218	ENST00000606525	RB1CC1	Q8TDY2	1594 aa		31.1	■■■□□ 2.57
NECAB3-218	ENST00000606525	CECR2	Q9BXF3	1484 aa		30.97	■■■□□ 2.55
NECAB3-218	ENST00000606525	MROH2B	Q7Z745	1585 aa		30.87	■■■□□ 2.53
NECAB3-218	ENST00000606525	WIZ	O95785	1651 aa		30.69	■■■□□ 2.5
NECAB3-218	ENST00000606525	UNC13A	Q9UPW8	1703 aa		30.64	■■■□□ 2.49
NECAB3-218	ENST00000606525	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.62	■■■□□ 2.49
NECAB3-218	ENST00000606525	LOC105371045	A0A1W2PR82	267 aa		30.59	■■■□□ 2.49
NECAB3-218	ENST00000606525	TRIM41	Q8WV44	630 aa		30.49	■■■□□ 2.47
NECAB3-218	ENST00000606525	SMARCA4	P51532	1647 aa		30.39	■■■□□ 2.46
NECAB3-218	ENST00000606525	TOP2A	P11388	1531 aa	Known RBP	30.28	■■■□□ 2.44
NECAB3-218	ENST00000606525	BICRA	Q9NZM4	1560 aa		30.25	■■■□□ 2.43
NECAB3-218	ENST00000606525	EIF4G1	Q04637	1599 aa	Known RBP	30.24	■■■□□ 2.43
NECAB3-218	ENST00000606525	PCGF6	Q9BYE7	350 aa		30.22	■■■□□ 2.43
NECAB3-218	ENST00000606525	HRC	P23327	699 aa		30.1	■■■□□ 2.41
NECAB3-218	ENST00000606525	PABPN1	Q86U42	306 aa	Known RBP eCLIP	30.09	■■■□□ 2.41	2e-7	■■■□□ 15
NECAB3-218	ENST00000606525	SMARCA2	P51531	1590 aa		30.08	■■■□□ 2.41
NECAB3-218	ENST00000606525	FAM9A	Q8IZU1	332 aa	Predicted RBP	30.08	■■■□□ 2.41
NECAB3-218	ENST00000606525	CCDC88B	A6NC98	1476 aa		30.07	■■■□□ 2.4
NECAB3-218	ENST00000606525	PEG3	Q9GZU2	1588 aa		29.92	■■■□□ 2.38
NECAB3-218	ENST00000606525	TRIM26	Q12899	539 aa	Predicted RBP	29.86	■■■□□ 2.37
NECAB3-218	ENST00000606525	ABCC8	Q09428	1581 aa		29.82	■■■□□ 2.36
NECAB3-218	ENST00000606525	EHMT2	Q96KQ7	1210 aa		29.72	■■■□□ 2.35
NECAB3-218	ENST00000606525	ATAD2B	Q9ULI0	1458 aa		29.66	■■■□□ 2.34
NECAB3-218	ENST00000606525	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.54	■■■□□ 2.32
NECAB3-218	ENST00000606525	SOGA1	O94964	1423 aa		29.47	■■■□□ 2.31
NECAB3-218	ENST00000606525	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.42	■■■□□ 2.3
NECAB3-218	ENST00000606525	EEA1	Q15075	1411 aa		29.42	■■■□□ 2.3
NECAB3-218	ENST00000606525	PPARGC1B	Q86YN6	1023 aa	Known RBP	29.38	■■■□□ 2.29
NECAB3-218	ENST00000606525	RUSC2	Q8N2Y8	1516 aa		29.33	■■■□□ 2.29
NECAB3-218	ENST00000606525	SYNJ1	O43426	1573 aa		29.3	■■■□□ 2.28
NECAB3-218	ENST00000606525	CSRNP3	Q8WYN3	585 aa		29.29	■■■□□ 2.28
NECAB3-218	ENST00000606525	TNIK	Q9UKE5	1360 aa		29.24	■■■□□ 2.27
NECAB3-218	ENST00000606525	CEP162	Q5TB80	1403 aa		29.21	■■■□□ 2.27
NECAB3-218	ENST00000606525	HMGXB3	Q12766	1538 aa		29.2	■■■□□ 2.27
NECAB3-218	ENST00000606525	NCAPD3	P42695	1498 aa		29.19	■■■□□ 2.26
NECAB3-218	ENST00000606525	GOLGA3	Q08378	1498 aa		29.14	■■■□□ 2.26
NECAB3-218	ENST00000606525	ZEB1	P37275	1124 aa	Predicted RBP	29.09	■■■□□ 2.25
NECAB3-218	ENST00000606525	UBTF	P17480	764 aa	Known RBP	29.05	■■■□□ 2.24
NECAB3-218	ENST00000606525	KIF21B	O75037	1637 aa		29.04	■■■□□ 2.24
NECAB3-218	ENST00000606525	TOP2B	Q02880	1626 aa		29.04	■■■□□ 2.24
NECAB3-218	ENST00000606525	CEP164	Q9UPV0	1460 aa		29.02	■■■□□ 2.24
NECAB3-218	ENST00000606525	BIVM-ERCC5	R4GMW8	1640 aa		28.97	■■■□□ 2.23
NECAB3-218	ENST00000606525	CFTR	P13569	1480 aa		28.85	■■■□□ 2.21
NECAB3-218	ENST00000606525	RAPGEF2	Q9Y4G8	1499 aa		28.8	■■■□□ 2.2
NECAB3-218	ENST00000606525	CUX1	P39880	1505 aa		28.78	■■■□□ 2.2
NECAB3-218	ENST00000606525	CLIP1	P30622	1438 aa		28.74	■■■□□ 2.19
NECAB3-218	ENST00000606525	TTBK1	Q5TCY1	1321 aa	Predicted RBP	28.7	■■■□□ 2.18
NECAB3-218	ENST00000606525	PRDM2	Q13029	1718 aa		28.7	■■■□□ 2.18
NECAB3-218	ENST00000606525	ERICH3	Q5RHP9	1530 aa		28.64	■■■□□ 2.18
NECAB3-218	ENST00000606525	PRX	Q9BXM0	1461 aa		28.64	■■■□□ 2.18
NECAB3-218	ENST00000606525	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	28.62	■■■□□ 2.17
NECAB3-218	ENST00000606525	VPS8	Q8N3P4	1428 aa		28.61	■■■□□ 2.17
NECAB3-218	ENST00000606525	CC2D2A	Q9P2K1	1620 aa		28.57	■■■□□ 2.16
NECAB3-218	ENST00000606525	KIF27	Q86VH2	1401 aa		28.56	■■■□□ 2.16
NECAB3-218	ENST00000606525	CADPS	Q9ULU8	1353 aa		28.55	■■■□□ 2.16
NECAB3-218	ENST00000606525	CCER1	Q8TC90	406 aa	Predicted RBP	28.55	■■■□□ 2.16
NECAB3-218	ENST00000606525	RANGAP1	P46060	587 aa	Predicted RBP	28.41	■■■□□ 2.14
NECAB3-218	ENST00000606525	ARAP1	Q96P48	1450 aa		28.36	■■■□□ 2.13
NECAB3-218	ENST00000606525	APLP2	Q06481	763 aa		28.35	■■■□□ 2.13
NECAB3-218	ENST00000606525	CUX2	O14529	1486 aa		28.31	■■■□□ 2.12
NECAB3-218	ENST00000606525	FGD5	Q6ZNL6	1462 aa		28.3	■■■□□ 2.12
NECAB3-218	ENST00000606525	IGF1R	P08069	1367 aa		28.26	■■■□□ 2.12
NECAB3-218	ENST00000606525	FANCD2	Q9BXW9	1451 aa		28.26	■■■□□ 2.12
NECAB3-218	ENST00000606525	ARHGAP35	Q9NRY4	1499 aa		28.17	■■■□□ 2.1
NECAB3-218	ENST00000606525	HNRNPUL2	Q1KMD3	747 aa	Known RBP	28.16	■■■□□ 2.1
NECAB3-218	ENST00000606525	DNMBP	Q6XZF7	1577 aa		28.14	■■■□□ 2.1
NECAB3-218	ENST00000606525	CARMIL1	Q5VZK9	1371 aa		28.12	■■■□□ 2.09
NECAB3-218	ENST00000606525	NES	P48681	1621 aa		28.1	■■■□□ 2.09
NECAB3-218	ENST00000606525	TOPBP1	Q92547	1522 aa		28.06	■■■□□ 2.08
NECAB3-218	ENST00000606525	KANK4	Q5T7N3	995 aa	Predicted RBP	28.05	■■■□□ 2.08
NECAB3-218	ENST00000606525	POLA1	P09884	1462 aa	Predicted RBP	28.02	■■■□□ 2.08
NECAB3-218	ENST00000606525	ABCA10	Q8WWZ4	1543 aa		28.02	■■■□□ 2.08
NECAB3-218	ENST00000606525	LAMC3	Q9Y6N6	1575 aa		28.01	■■■□□ 2.07
NECAB3-218	ENST00000606525	RAD54L2	Q9Y4B4	1467 aa		28	■■■□□ 2.07
NECAB3-218	ENST00000606525	RRBP1	Q9P2E9	1410 aa	Known RBP	27.93	■■■□□ 2.06
NECAB3-218	ENST00000606525	URB2	Q14146	1524 aa	Known RBP	27.88	■■■□□ 2.05
NECAB3-218	ENST00000606525	MAP3K1	Q13233	1512 aa		27.86	■■■□□ 2.05
NECAB3-218	ENST00000606525	CUL7	Q14999	1698 aa		27.86	■■■□□ 2.05
NECAB3-218	ENST00000606525	WDR97	A6NE52	1622 aa		27.84	■■■□□ 2.05
NECAB3-218	ENST00000606525	TIAM1	Q13009	1591 aa		27.83	■■■□□ 2.05
NECAB3-218	ENST00000606525	DIEXF	Q68CQ4	756 aa	Known RBP	27.82	■■■□□ 2.04
NECAB3-218	ENST00000606525	PDS5B	Q9NTI5	1447 aa		27.78	■■■□□ 2.04
NECAB3-218	ENST00000606525	CCNB3	Q8WWL7	1395 aa		27.77	■■■□□ 2.04
NECAB3-218	ENST00000606525	FHAD1	B1AJZ9	1412 aa		27.77	■■■□□ 2.04
NECAB3-218	ENST00000606525	DNAJC5B	Q9UF47	199 aa		27.77	■■■□□ 2.04
NECAB3-218	ENST00000606525	ZNF316	A6NFI3	1004 aa	Predicted RBP	27.75	■■■□□ 2.03
NECAB3-218	ENST00000606525	CTTNBP2	Q8WZ74	1663 aa		27.73	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms