RNA–Protein interactions for RNA: ENST00000606525.5

NECAB3-218, Transcript of N-terminal EF-hand calcium binding protein 3, humanhuman

TSL 2

Gene NECAB3, Length 2,010 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAB3-218ENST00000606525 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19■□□□□ 0.632e-6■■■■■ 163.7
NECAB3-218ENST00000606525 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.12■□□□□ 0.817e-6■■■■■ 74.5
NECAB3-218ENST00000606525 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.18■□□□□ 0.824e-7■■■■■ 58.1
NECAB3-218ENST00000606525 PUS1Q9Y606 427 aaKnown RBP eCLIP15.57■□□□□ 0.081e-5■■■■■ 49.7
NECAB3-218ENST00000606525 PABPC4Q13310 644 aaKnown RBP eCLIP20.6■□□□□ 0.894e-8■■■■■ 35.4
NECAB3-218ENST00000606525 EIF4G2P78344 907 aaKnown RBP eCLIP26.22■■□□□ 1.791e-8■■■■■ 29.7
NECAB3-218ENST00000606525 UPF1Q92900 1129 aaKnown RBP eCLIP19.64■□□□□ 0.732e-9■■■■■ 29.1
NECAB3-218ENST00000606525 HNRNPKP61978 463 aaKnown RBP eCLIP17.01■□□□□ 0.311e-8■■■■■ 28.7
NECAB3-218ENST00000606525 AQRO60306 1485 aaKnown RBP eCLIP27.59■■■□□ 2.014e-8■■■■■ 28.5
NECAB3-218ENST00000606525 SF3B4Q15427 424 aaKnown RBP eCLIP17.06■□□□□ 0.322e-10■■■■■ 27.7
NECAB3-218ENST00000606525 GTF2F1P35269 517 aaKnown RBP eCLIP21.5■■□□□ 1.038e-7■■■■□ 24.7
NECAB3-218ENST00000606525 NKRFO15226 690 aaKnown RBP eCLIP20.8■□□□□ 0.923e-7■■■■□ 24.1
NECAB3-218ENST00000606525 TARDBPQ13148 414 aaKnown RBP eCLIP17.58■□□□□ 0.42e-6■■■■□ 22.1
NECAB3-218ENST00000606525 PCBP1Q15365 356 aaKnown RBP eCLIP19.4■□□□□ 0.74e-7■■■■□ 21.8
NECAB3-218ENST00000606525 NONOQ15233 471 aaKnown RBP eCLIP21.04■□□□□ 0.961e-6■■■■□ 21.7
NECAB3-218ENST00000606525 AKAP1Q92667 903 aaKnown RBP eCLIP16.91■□□□□ 0.32e-8■■■■□ 20.8
NECAB3-218ENST00000606525 PPIGQ13427 754 aaKnown RBP eCLIP17.94■□□□□ 0.466e-10■■■■□ 20.2
NECAB3-218ENST00000606525 DDX6P26196 483 aaKnown RBP eCLIP18.14■□□□□ 0.492e-6■■■■□ 20.1
NECAB3-218ENST00000606525 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.94■■□□□ 1.14e-7■■■■□ 19.8
NECAB3-218ENST00000606525 RBFOX2O43251 390 aaKnown RBP eCLIP15.43■□□□□ 0.063e-7■■■■□ 19.7
NECAB3-218ENST00000606525 SRSF9Q13242 221 aaKnown RBP eCLIP13.52□□□□□ -0.247e-7■■■■□ 19.4
NECAB3-218ENST00000606525 SF3A3Q12874 501 aaKnown RBP eCLIP19.58■□□□□ 0.727e-7■■■□□ 18.1
NECAB3-218ENST00000606525 EFTUD2Q15029 972 aaKnown RBP eCLIP19.47■□□□□ 0.712e-10■■■□□ 17.8
NECAB3-218ENST00000606525 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.08■□□□□ 0.975e-7■■■□□ 17.2
NECAB3-218ENST00000606525 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.97■□□□□ 0.793e-11■■■□□ 16.1
NECAB3-218ENST00000606525 PRPF4O43172 522 aaKnown RBP eCLIP19.51■□□□□ 0.712e-6■■■□□ 16
NECAB3-218ENST00000606525 LSM11P83369 360 aaKnown RBP eCLIP17.54■□□□□ 0.41e-7■■■□□ 15.9
NECAB3-218ENST00000606525 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.2□□□□□ -0.144e-9■■■□□ 15.2
NECAB3-218ENST00000606525 PABPN1Q86U42 306 aaKnown RBP eCLIP30.09■■■□□ 2.412e-7■■■□□ 15
NECAB3-218ENST00000606525 SRSF1Q07955 248 aaKnown RBP eCLIP14.02□□□□□ -0.161e-10■■□□□ 14.5
NECAB3-218ENST00000606525 CDC40O60508 579 aaKnown RBP eCLIP16.9■□□□□ 0.38e-13■■□□□ 14.2
NECAB3-218ENST00000606525 ZNF622Q969S3 477 aaKnown RBP eCLIP20.81■□□□□ 0.921e-6■■□□□ 14.2
NECAB3-218ENST00000606525 ZC3H11AO75152 810 aaKnown RBP eCLIP20.02■□□□□ 0.81e-11■■□□□ 13.5
NECAB3-218ENST00000606525 EWSR1Q01844 656 aaKnown RBP eCLIP15.85■□□□□ 0.132e-6■■□□□ 12.7
NECAB3-218ENST00000606525 RBM22Q9NW64 420 aaKnown RBP eCLIP18.93■□□□□ 0.628e-6■■□□□ 12.7
NECAB3-218ENST00000606525 PCBP2Q15366 365 aaKnown RBP eCLIP18.42■□□□□ 0.543e-7■■□□□ 12.6
NECAB3-218ENST00000606525 U2AF1Q01081 240 aaKnown RBP eCLIP24.22■■□□□ 1.472e-6■■□□□ 12.5
NECAB3-218ENST00000606525 SMNDC1O75940 238 aaKnown RBP eCLIP18.82■□□□□ 0.64e-6■■□□□ 12.4
NECAB3-218ENST00000606525 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.78■□□□□ 0.64e-11■■□□□ 12
NECAB3-218ENST00000606525 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.23■□□□□ 0.833e-11■■□□□ 11.8
NECAB3-218ENST00000606525 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.64■■□□□ 1.72e-7■■□□□ 11.7
NECAB3-218ENST00000606525 RBM5P52756 815 aaKnown RBP eCLIP20.77■□□□□ 0.911e-7■■□□□ 11.5
NECAB3-218ENST00000606525 U2AF2P26368 475 aaKnown RBP eCLIP21.63■■□□□ 1.055e-10■□□□□ 11.1
NECAB3-218ENST00000606525 GPKOWQ92917 476 aaPredicted RBP eCLIP21.21■□□□□ 0.994e-6■□□□□ 10.4
NECAB3-218ENST00000606525 TIA1P31483 386 aaKnown RBP eCLIP17.97■□□□□ 0.472e-11■□□□□ 10.1
NECAB3-218ENST00000606525 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.03■□□□□ 0.321e-7■□□□□ 9.8
NECAB3-218ENST00000606525 SRSF7Q16629 238 aaKnown RBP eCLIP15.99■□□□□ 0.158e-10■□□□□ 9.8
NECAB3-218ENST00000606525 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.51■□□□□ 0.714e-15■□□□□ 9.6
NECAB3-218ENST00000606525 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.05■□□□□ 0.963e-7■□□□□ 8.6
NECAB3-218ENST00000606525 LARP4Q71RC2 724 aaKnown RBP eCLIP18.63■□□□□ 0.574e-11■□□□□ 8.3
NECAB3-218ENST00000606525 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.7■□□□□ 0.426e-8■□□□□ 8.3
NECAB3-218ENST00000606525 TIAL1Q01085 375 aaKnown RBP eCLIP18.69■□□□□ 0.584e-7■□□□□ 8
Retrieved 52 of 52 RNA–protein pairs in 20.4 ms