RNA–Protein interactions for RNA: ENST00000599699.2

SSBP4-206, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene SSBP4, Length 793 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-206ENST00000599699 PCBP2Q15366 365 aaKnown RBP eCLIP26.63■■□□□ 1.855e-27■■■■■ 121.4
SSBP4-206ENST00000599699 HNRNPKP61978 463 aaKnown RBP eCLIP28.24■■■□□ 2.111e-17■■■■■ 94.9
SSBP4-206ENST00000599699 DDX55Q8NHQ9 600 aaKnown RBP eCLIP34.24■■■■□ 3.075e-8■■■■■ 57.5
SSBP4-206ENST00000599699 DDX59Q5T1V6 619 aaKnown RBP eCLIP25.51■■□□□ 1.672e-11■■■■■ 56.1
SSBP4-206ENST00000599699 AQRO60306 1485 aaKnown RBP eCLIP49.16■■■■■ 5.463e-9■■■■■ 42.1
SSBP4-206ENST00000599699 EFTUD2Q15029 972 aaKnown RBP eCLIP27■■□□□ 1.915e-8■■■■■ 37.8
SSBP4-206ENST00000599699 SF3B4Q15427 424 aaKnown RBP eCLIP25.58■■□□□ 1.693e-9■■■■■ 31.4
SSBP4-206ENST00000599699 PABPN1Q86U42 306 aaKnown RBP eCLIP55.89■■■■■ 6.548e-9■■■■□ 25.1
SSBP4-206ENST00000599699 PABPC4Q13310 644 aaKnown RBP eCLIP33.69■■■□□ 2.981e-6■■■■□ 23.3
SSBP4-206ENST00000599699 PCBP1Q15365 356 aaKnown RBP eCLIP31.22■■■□□ 2.592e-10■■■■□ 20.9
SSBP4-206ENST00000599699 RBFOX2O43251 390 aaKnown RBP eCLIP21.91■■□□□ 1.15e-6■■■■□ 20.6
SSBP4-206ENST00000599699 SF3A3Q12874 501 aaKnown RBP eCLIP25.41■■□□□ 1.667e-12■■■■□ 19.8
SSBP4-206ENST00000599699 PPIGQ13427 754 aaKnown RBP eCLIP32.03■■■□□ 2.723e-10■■■□□ 17.9
SSBP4-206ENST00000599699 DDX24Q9GZR7 859 aaKnown RBP eCLIP34.16■■■■□ 3.062e-7■■■□□ 17.8
SSBP4-206ENST00000599699 RBM5P52756 815 aaKnown RBP eCLIP34.83■■■■□ 3.171e-11■■■□□ 16.2
SSBP4-206ENST00000599699 XRN2Q9H0D6 950 aaKnown RBP eCLIP33.02■■■□□ 2.882e-12■■■□□ 14.7
SSBP4-206ENST00000599699 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP23.75■■□□□ 1.391e-12■■□□□ 13.4
SSBP4-206ENST00000599699 ILF3Q12906 894 aaKnown RBP eCLIP27.99■■■□□ 2.072e-11■■□□□ 11.9
SSBP4-206ENST00000599699 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP43.04■■■■■ 4.483e-9■□□□□ 11.1
SSBP4-206ENST00000599699 SRSF1Q07955 248 aaKnown RBP eCLIP26.02■■□□□ 1.765e-7■□□□□ 10.3
SSBP4-206ENST00000599699 LSM11P83369 360 aaKnown RBP eCLIP24.67■■□□□ 1.541e-8■□□□□ 9.9
SSBP4-206ENST00000599699 BUD13Q9BRD0 619 aaKnown RBP eCLIP31.94■■■□□ 2.72e-8■□□□□ 8.3
SSBP4-206ENST00000599699 DDX6P26196 483 aaKnown RBP eCLIP29.92■■■□□ 2.382e-8■□□□□ 8.2
SSBP4-206ENST00000599699 U2AF2P26368 475 aaKnown RBP eCLIP31.66■■■□□ 2.661e-7■□□□□ 8
Retrieved 24 of 24 RNA–protein pairs in 449 ms