RNA–Protein interactions for RNA: ENST00000596378.1

SRRM1-222, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 1 (best)

Gene SRRM1, Length 2,314 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-222ENST00000596378 NISCHQ9Y2I1 1504 aa48.44■■■■■ 5.34
SRRM1-222ENST00000596378 CCDC180Q9P1Z9 1646 aa41.45■■■■■ 4.23
SRRM1-222ENST00000596378 SHROOM4Q9ULL8 1493 aa40.93■■■■■ 4.14
SRRM1-222ENST00000596378 ZCCHC6Q5VYS8 1495 aaKnown RBP40.9■■■■■ 4.14
SRRM1-222ENST00000596378 DCAF8L2P0C7V8 631 aa40.2■■■■■ 4.03
SRRM1-222ENST00000596378 SUPT5HO00267 1087 aaKnown RBP39.89■■■■□ 3.98
SRRM1-222ENST00000596378 DCAF1Q9Y4B6 1507 aa39.75■■■■□ 3.95
SRRM1-222ENST00000596378 SCRIBQ14160 1630 aa38.76■■■■□ 3.8
SRRM1-222ENST00000596378 MYO15BQ96JP2 1530 aa38.76■■■■□ 3.8
SRRM1-222ENST00000596378 ABCC9O60706 1549 aa38.72■■■■□ 3.79
SRRM1-222ENST00000596378 CHIC1Q5VXU3 224 aa38.58■■■■□ 3.77
SRRM1-222ENST00000596378 NACADO15069 1562 aa38.38■■■■□ 3.73
SRRM1-222ENST00000596378 RSF1Q96T23 1441 aaPredicted RBP38.14■■■■□ 3.7
SRRM1-222ENST00000596378 RB1CC1Q8TDY2 1594 aa37.86■■■■□ 3.65
SRRM1-222ENST00000596378 CECR2Q9BXF3 1484 aa37.81■■■■□ 3.64
SRRM1-222ENST00000596378 MROH2BQ7Z745 1585 aa37.65■■■■□ 3.62
SRRM1-222ENST00000596378 WIZO95785 1651 aa37.45■■■■□ 3.59
SRRM1-222ENST00000596378 LOC105371045A0A1W2PR82 267 aa37.42■■■■□ 3.58
SRRM1-222ENST00000596378 UNC13AQ9UPW8 1703 aa37.38■■■■□ 3.57
SRRM1-222ENST00000596378 BAZ1AQ9NRL2 1556 aaPredicted RBP37.24■■■■□ 3.55
SRRM1-222ENST00000596378 TRIM41Q8WV44 630 aa37.19■■■■□ 3.54
SRRM1-222ENST00000596378 SMARCA4P51532 1647 aa37.02■■■■□ 3.52
SRRM1-222ENST00000596378 PABPN1Q86U42 306 aaKnown RBP eCLIP36.9■■■■□ 3.5
SRRM1-222ENST00000596378 PCGF6Q9BYE7 350 aa36.9■■■■□ 3.5
SRRM1-222ENST00000596378 FAM9AQ8IZU1 332 aaPredicted RBP36.88■■■■□ 3.49
SRRM1-222ENST00000596378 BICRAQ9NZM4 1560 aa36.88■■■■□ 3.49
SRRM1-222ENST00000596378 TOP2AP11388 1531 aaKnown RBP36.84■■■■□ 3.49
SRRM1-222ENST00000596378 EIF4G1Q04637 1599 aaKnown RBP36.77■■■■□ 3.48
SRRM1-222ENST00000596378 CCDC88BA6NC98 1476 aa36.65■■■■□ 3.46
SRRM1-222ENST00000596378 SMARCA2P51531 1590 aa36.63■■■■□ 3.45
SRRM1-222ENST00000596378 EHMT2Q96KQ7 1210 aa36.58■■■■□ 3.45
SRRM1-222ENST00000596378 HRCP23327 699 aa36.58■■■■□ 3.45
SRRM1-222ENST00000596378 ABCC8Q09428 1581 aa36.44■■■■□ 3.42
SRRM1-222ENST00000596378 PEG3Q9GZU2 1588 aa36.32■■■■□ 3.4
SRRM1-222ENST00000596378 TRIM26Q12899 539 aaPredicted RBP36.29■■■■□ 3.4
SRRM1-222ENST00000596378 ATAD2BQ9ULI0 1458 aa36.14■■■■□ 3.38
SRRM1-222ENST00000596378 BAZ1BQ9UIG0 1483 aaKnown RBP36.02■■■■□ 3.36
SRRM1-222ENST00000596378 SOGA1O94964 1423 aa35.97■■■■□ 3.35
SRRM1-222ENST00000596378 PPARGC1BQ86YN6 1023 aaKnown RBP35.94■■■■□ 3.34
SRRM1-222ENST00000596378 WRNQ14191 1432 aaPredicted RBP eCLIP35.84■■■■□ 3.33
SRRM1-222ENST00000596378 RUSC2Q8N2Y8 1516 aa35.84■■■■□ 3.33
SRRM1-222ENST00000596378 SYNJ1O43426 1573 aa35.74■■■■□ 3.31
SRRM1-222ENST00000596378 EEA1Q15075 1411 aa35.68■■■■□ 3.3
SRRM1-222ENST00000596378 CSRNP3Q8WYN3 585 aa35.67■■■■□ 3.3
SRRM1-222ENST00000596378 CEP162Q5TB80 1403 aa35.58■■■■□ 3.29
SRRM1-222ENST00000596378 TNIKQ9UKE5 1360 aa35.54■■■■□ 3.28
SRRM1-222ENST00000596378 NCAPD3P42695 1498 aa35.5■■■■□ 3.27
SRRM1-222ENST00000596378 HMGXB3Q12766 1538 aa35.5■■■■□ 3.27
SRRM1-222ENST00000596378 UBTFP17480 764 aaKnown RBP35.49■■■■□ 3.27
SRRM1-222ENST00000596378 GOLGA3Q08378 1498 aa35.44■■■■□ 3.26
SRRM1-222ENST00000596378 TOP2BQ02880 1626 aa35.33■■■■□ 3.25
SRRM1-222ENST00000596378 TTBK1Q5TCY1 1321 aaPredicted RBP35.29■■■■□ 3.24
SRRM1-222ENST00000596378 CEP164Q9UPV0 1460 aa35.29■■■■□ 3.24
SRRM1-222ENST00000596378 KIF21BO75037 1637 aa35.28■■■■□ 3.24
SRRM1-222ENST00000596378 ZEB1P37275 1124 aaPredicted RBP35.24■■■■□ 3.23
SRRM1-222ENST00000596378 BIVM-ERCC5R4GMW8 1640 aa35.22■■■■□ 3.23
SRRM1-222ENST00000596378 RAPGEF2Q9Y4G8 1499 aa35.12■■■■□ 3.21
SRRM1-222ENST00000596378 CFTRP13569 1480 aa35.1■■■■□ 3.21
SRRM1-222ENST00000596378 CUX1P39880 1505 aa35.08■■■■□ 3.21
SRRM1-222ENST00000596378 CLIP1P30622 1438 aa35.01■■■■□ 3.2
SRRM1-222ENST00000596378 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.98■■■■□ 3.19
SRRM1-222ENST00000596378 RANGAP1P46060 587 aaPredicted RBP34.93■■■■□ 3.18
SRRM1-222ENST00000596378 CC2D2AQ9P2K1 1620 aa34.9■■■■□ 3.18
SRRM1-222ENST00000596378 PRDM2Q13029 1718 aa34.88■■■■□ 3.17
SRRM1-222ENST00000596378 CCER1Q8TC90 406 aaPredicted RBP34.82■■■■□ 3.17
SRRM1-222ENST00000596378 PRXQ9BXM0 1461 aa34.82■■■■□ 3.17
SRRM1-222ENST00000596378 VPS8Q8N3P4 1428 aa34.8■■■■□ 3.16
SRRM1-222ENST00000596378 ERICH3Q5RHP9 1530 aa34.78■■■■□ 3.16
SRRM1-222ENST00000596378 CADPSQ9ULU8 1353 aa34.78■■■■□ 3.16
SRRM1-222ENST00000596378 KIF27Q86VH2 1401 aa34.76■■■■□ 3.15
SRRM1-222ENST00000596378 APLP2Q06481 763 aa34.56■■■■□ 3.12
SRRM1-222ENST00000596378 CUX2O14529 1486 aa34.55■■■■□ 3.12
SRRM1-222ENST00000596378 ARAP1Q96P48 1450 aa34.54■■■■□ 3.12
SRRM1-222ENST00000596378 FGD5Q6ZNL6 1462 aa34.52■■■■□ 3.12
SRRM1-222ENST00000596378 FANCD2Q9BXW9 1451 aa34.47■■■■□ 3.11
SRRM1-222ENST00000596378 HNRNPUL2Q1KMD3 747 aaKnown RBP34.44■■■■□ 3.1
SRRM1-222ENST00000596378 IGF1RP08069 1367 aa34.42■■■■□ 3.1
SRRM1-222ENST00000596378 NESP48681 1621 aa34.4■■■■□ 3.1
SRRM1-222ENST00000596378 ARHGAP35Q9NRY4 1499 aa34.32■■■■□ 3.08
SRRM1-222ENST00000596378 CARMIL1Q5VZK9 1371 aa34.26■■■■□ 3.08
SRRM1-222ENST00000596378 KANK4Q5T7N3 995 aaPredicted RBP34.26■■■■□ 3.07
SRRM1-222ENST00000596378 DNMBPQ6XZF7 1577 aa34.25■■■■□ 3.07
SRRM1-222ENST00000596378 RAD54L2Q9Y4B4 1467 aa34.22■■■■□ 3.07
SRRM1-222ENST00000596378 TOPBP1Q92547 1522 aa34.21■■■■□ 3.07
SRRM1-222ENST00000596378 POLA1P09884 1462 aaPredicted RBP34.17■■■■□ 3.06
SRRM1-222ENST00000596378 DNAJC5BQ9UF47 199 aa34.12■■■■□ 3.05
SRRM1-222ENST00000596378 ABCA10Q8WWZ4 1543 aa34.09■■■■□ 3.05
SRRM1-222ENST00000596378 LAMC3Q9Y6N6 1575 aa34.08■■■■□ 3.05
SRRM1-222ENST00000596378 URB2Q14146 1524 aaKnown RBP34.02■■■■□ 3.04
SRRM1-222ENST00000596378 RRBP1Q9P2E9 1410 aaKnown RBP33.92■■■■□ 3.02
SRRM1-222ENST00000596378 P3H3Q8IVL6 736 aa33.9■■■■□ 3.02
SRRM1-222ENST00000596378 WDR97A6NE52 1622 aa33.88■■■■□ 3.01
SRRM1-222ENST00000596378 TIAM1Q13009 1591 aa33.87■■■■□ 3.01
SRRM1-222ENST00000596378 DIEXFQ68CQ4 756 aaKnown RBP33.87■■■■□ 3.01
SRRM1-222ENST00000596378 CUL7Q14999 1698 aa33.86■■■■□ 3.01
SRRM1-222ENST00000596378 KIF21AQ7Z4S6 1674 aa33.84■■■■□ 3.01
SRRM1-222ENST00000596378 PDS5BQ9NTI5 1447 aa33.84■■■■□ 3.01
SRRM1-222ENST00000596378 CCNB3Q8WWL7 1395 aa33.81■■■■□ 3
SRRM1-222ENST00000596378 TDRD9Q8NDG6 1382 aaKnown RBP33.8■■■■□ 3
SRRM1-222ENST00000596378 PCF11O94913 1555 aaKnown RBP33.78■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms