RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 NISCHQ9Y2I1 1504 aa30.07■■■□□ 2.4
SMARCA4-219ENST00000592604 SHROOM4Q9ULL8 1493 aa25.68■■□□□ 1.7
SMARCA4-219ENST00000592604 ZCCHC6Q5VYS8 1495 aaKnown RBP25.5■■□□□ 1.67
SMARCA4-219ENST00000592604 CCDC180Q9P1Z9 1646 aa25.46■■□□□ 1.67
SMARCA4-219ENST00000592604 SUPT5HO00267 1087 aaKnown RBP25.36■■□□□ 1.65
SMARCA4-219ENST00000592604 CHIC1Q5VXU3 224 aa24.92■■□□□ 1.58
SMARCA4-219ENST00000592604 MYO15BQ96JP2 1530 aa24.87■■□□□ 1.57
SMARCA4-219ENST00000592604 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
SMARCA4-219ENST00000592604 HRCP23327 699 aa24.7■■□□□ 1.54
SMARCA4-219ENST00000592604 DCAF8L2P0C7V8 631 aa24.64■■□□□ 1.54
SMARCA4-219ENST00000592604 PCGF6Q9BYE7 350 aa24.38■■□□□ 1.49
SMARCA4-219ENST00000592604 LOC105371045A0A1W2PR82 267 aa24.12■■□□□ 1.45
SMARCA4-219ENST00000592604 ABCC9O60706 1549 aa24.11■■□□□ 1.45
SMARCA4-219ENST00000592604 PPARGC1BQ86YN6 1023 aaKnown RBP24.02■■□□□ 1.44
SMARCA4-219ENST00000592604 TRIM26Q12899 539 aaPredicted RBP23.94■■□□□ 1.42
SMARCA4-219ENST00000592604 RSF1Q96T23 1441 aaPredicted RBP23.9■■□□□ 1.42
SMARCA4-219ENST00000592604 SCRIBQ14160 1630 aa23.79■■□□□ 1.4
SMARCA4-219ENST00000592604 RB1CC1Q8TDY2 1594 aa23.72■■□□□ 1.39
SMARCA4-219ENST00000592604 TRIM41Q8WV44 630 aa23.66■■□□□ 1.38
SMARCA4-219ENST00000592604 ZEB1P37275 1124 aaPredicted RBP23.6■■□□□ 1.37
SMARCA4-219ENST00000592604 PELP1Q8IZL8 1130 aaKnown RBP23.55■■□□□ 1.36
SMARCA4-219ENST00000592604 NACADO15069 1562 aa23.45■■□□□ 1.34
SMARCA4-219ENST00000592604 FAM9AQ8IZU1 332 aaPredicted RBP23.39■■□□□ 1.33
SMARCA4-219ENST00000592604 CECR2Q9BXF3 1484 aa23.38■■□□□ 1.33
SMARCA4-219ENST00000592604 MROH2BQ7Z745 1585 aa23.36■■□□□ 1.33
SMARCA4-219ENST00000592604 WIZO95785 1651 aa23.25■■□□□ 1.31
SMARCA4-219ENST00000592604 BAZ1AQ9NRL2 1556 aaPredicted RBP23.17■■□□□ 1.3
SMARCA4-219ENST00000592604 EIF4G1Q04637 1599 aaKnown RBP23.14■■□□□ 1.29
SMARCA4-219ENST00000592604 EHMT2Q96KQ7 1210 aa23.09■■□□□ 1.29
SMARCA4-219ENST00000592604 MYT1Q01538 1121 aa23.07■■□□□ 1.28
SMARCA4-219ENST00000592604 TOP2AP11388 1531 aaKnown RBP22.92■■□□□ 1.26
SMARCA4-219ENST00000592604 SCAF1Q9H7N4 1312 aaKnown RBP22.91■■□□□ 1.26
SMARCA4-219ENST00000592604 WRNQ14191 1432 aaPredicted RBP eCLIP22.88■■□□□ 1.25
SMARCA4-219ENST00000592604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.83■■□□□ 1.25
SMARCA4-219ENST00000592604 SMARCA4P51532 1647 aa22.83■■□□□ 1.24
SMARCA4-219ENST00000592604 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
SMARCA4-219ENST00000592604 CCER1Q8TC90 406 aaPredicted RBP22.81■■□□□ 1.24
SMARCA4-219ENST00000592604 ABCC8Q09428 1581 aa22.8■■□□□ 1.24
SMARCA4-219ENST00000592604 SMARCA2P51531 1590 aa22.8■■□□□ 1.24
SMARCA4-219ENST00000592604 CEP162Q5TB80 1403 aa22.73■■□□□ 1.23
SMARCA4-219ENST00000592604 TNIKQ9UKE5 1360 aa22.72■■□□□ 1.23
SMARCA4-219ENST00000592604 EEA1Q15075 1411 aa22.7■■□□□ 1.22
SMARCA4-219ENST00000592604 SOGA1O94964 1423 aa22.66■■□□□ 1.22
SMARCA4-219ENST00000592604 UNC13AQ9UPW8 1703 aa22.66■■□□□ 1.22
SMARCA4-219ENST00000592604 ACIN1Q9UKV3 1341 aaKnown RBP22.63■■□□□ 1.21
SMARCA4-219ENST00000592604 CSRNP3Q8WYN3 585 aa22.6■■□□□ 1.21
SMARCA4-219ENST00000592604 DIEXFQ68CQ4 756 aaKnown RBP22.58■■□□□ 1.2
SMARCA4-219ENST00000592604 RUSC2Q8N2Y8 1516 aa22.53■■□□□ 1.2
SMARCA4-219ENST00000592604 NEUROD1Q13562 356 aa22.53■■□□□ 1.2
SMARCA4-219ENST00000592604 GOLGA3Q08378 1498 aa22.51■■□□□ 1.19
SMARCA4-219ENST00000592604 UBTFP17480 764 aaKnown RBP22.47■■□□□ 1.19
SMARCA4-219ENST00000592604 TTBK1Q5TCY1 1321 aaPredicted RBP22.45■■□□□ 1.18
SMARCA4-219ENST00000592604 CENPBP07199 599 aaPredicted RBP22.44■■□□□ 1.18
SMARCA4-219ENST00000592604 PEG3Q9GZU2 1588 aa22.43■■□□□ 1.18
SMARCA4-219ENST00000592604 KIF21BO75037 1637 aa22.37■■□□□ 1.17
SMARCA4-219ENST00000592604 CEP164Q9UPV0 1460 aa22.36■■□□□ 1.17
SMARCA4-219ENST00000592604 ZNF316A6NFI3 1004 aaPredicted RBP22.36■■□□□ 1.17
SMARCA4-219ENST00000592604 BICRAQ9NZM4 1560 aa22.35■■□□□ 1.17
SMARCA4-219ENST00000592604 GTF3C3Q9Y5Q9 886 aa22.32■■□□□ 1.16
SMARCA4-219ENST00000592604 SYNJ1O43426 1573 aa22.3■■□□□ 1.16
SMARCA4-219ENST00000592604 CLIP1P30622 1438 aa22.24■■□□□ 1.15
SMARCA4-219ENST00000592604 BAZ1BQ9UIG0 1483 aaKnown RBP22.23■■□□□ 1.15
SMARCA4-219ENST00000592604 VPS8Q8N3P4 1428 aa22.22■■□□□ 1.15
SMARCA4-219ENST00000592604 PABPN1Q86U42 306 aaKnown RBP eCLIP22.19■■□□□ 1.14
SMARCA4-219ENST00000592604 ATAD2BQ9ULI0 1458 aa22.16■■□□□ 1.14
SMARCA4-219ENST00000592604 HNRNPUL2Q1KMD3 747 aaKnown RBP22.13■■□□□ 1.13
SMARCA4-219ENST00000592604 RAPGEF2Q9Y4G8 1499 aa22.11■■□□□ 1.13
SMARCA4-219ENST00000592604 APLP2Q06481 763 aa22.05■■□□□ 1.12
SMARCA4-219ENST00000592604 TOP2BQ02880 1626 aa22.04■■□□□ 1.12
SMARCA4-219ENST00000592604 MIER1Q8N108 512 aa22.03■■□□□ 1.12
SMARCA4-219ENST00000592604 BIVM-ERCC5R4GMW8 1640 aa21.97■■□□□ 1.11
SMARCA4-219ENST00000592604 CLSPNQ9HAW4 1339 aa21.97■■□□□ 1.11
SMARCA4-219ENST00000592604 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
SMARCA4-219ENST00000592604 PRKCSHP14314 528 aaPredicted RBP21.94■■□□□ 1.1
SMARCA4-219ENST00000592604 YTHDC1Q96MU7 727 aaKnown RBP21.94■■□□□ 1.1
SMARCA4-219ENST00000592604 PRXQ9BXM0 1461 aa21.92■■□□□ 1.1
SMARCA4-219ENST00000592604 ARAP1Q96P48 1450 aa21.87■■□□□ 1.09
SMARCA4-219ENST00000592604 DHX57Q6P158 1386 aaKnown RBP21.85■■□□□ 1.09
SMARCA4-219ENST00000592604 RANGAP1P46060 587 aaPredicted RBP21.82■■□□□ 1.08
SMARCA4-219ENST00000592604 RRBP1Q9P2E9 1410 aaKnown RBP21.78■■□□□ 1.08
SMARCA4-219ENST00000592604 KANK4Q5T7N3 995 aaPredicted RBP21.75■■□□□ 1.07
SMARCA4-219ENST00000592604 CUX2O14529 1486 aa21.73■■□□□ 1.07
SMARCA4-219ENST00000592604 CUX1P39880 1505 aa21.73■■□□□ 1.07
SMARCA4-219ENST00000592604 HMGXB3Q12766 1538 aa21.72■■□□□ 1.07
SMARCA4-219ENST00000592604 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
SMARCA4-219ENST00000592604 NCAPD3P42695 1498 aa21.7■■□□□ 1.06
SMARCA4-219ENST00000592604 ARHGAP35Q9NRY4 1499 aa21.63■■□□□ 1.05
SMARCA4-219ENST00000592604 CCNB3Q8WWL7 1395 aa21.62■■□□□ 1.05
SMARCA4-219ENST00000592604 CFTRP13569 1480 aa21.61■■□□□ 1.05
SMARCA4-219ENST00000592604 MAP3K1Q13233 1512 aa21.53■■□□□ 1.04
SMARCA4-219ENST00000592604 BCL11AQ9H165 835 aa21.53■■□□□ 1.04
SMARCA4-219ENST00000592604 PRDM2Q13029 1718 aa21.48■■□□□ 1.03
SMARCA4-219ENST00000592604 SUPT16HQ9Y5B9 1047 aaKnown RBP21.47■■□□□ 1.03
SMARCA4-219ENST00000592604 TIAM1Q13009 1591 aa21.46■■□□□ 1.03
SMARCA4-219ENST00000592604 IGF1RP08069 1367 aa21.45■■□□□ 1.03
SMARCA4-219ENST00000592604 MAPKBP1O60336 1514 aa21.45■■□□□ 1.02
SMARCA4-219ENST00000592604 RAB3GAP2Q9H2M9 1393 aa21.45■■□□□ 1.02
SMARCA4-219ENST00000592604 SETD5Q9C0A6 1442 aa21.38■■□□□ 1.01
SMARCA4-219ENST00000592604 ITGAEP38570 1179 aa21.38■■□□□ 1.01
SMARCA4-219ENST00000592604 LRRC9Q6ZRR7 1453 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms