RNA–Protein interactions for RNA: ENST00000583160.5

COPS3-217, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 365 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-217ENST00000583160 AEBP2Q6ZN18 517 aaPredicted RBP25.77■■□□□ 1.72
COPS3-217ENST00000583160 CHIC1Q5VXU3 224 aa24.89■■□□□ 1.58
COPS3-217ENST00000583160 SENP3Q9H4L4 574 aaPredicted RBP21.91■■□□□ 1.1
COPS3-217ENST00000583160 PHF23Q9BUL5 403 aaPredicted RBP21.87■■□□□ 1.09
COPS3-217ENST00000583160 FOXD1Q16676 465 aa20.37■□□□□ 0.85
COPS3-217ENST00000583160 PLPPR3Q6T4P5 718 aa20.09■□□□□ 0.81
COPS3-217ENST00000583160 PPP6R1Q9UPN7 881 aa19.41■□□□□ 0.7
COPS3-217ENST00000583160 ADRA2BP18089 450 aa19.37■□□□□ 0.69
COPS3-217ENST00000583160 PIAS4Q8N2W9 510 aaPredicted RBP19.15■□□□□ 0.66
COPS3-217ENST00000583160 MSH5O43196 834 aa18.89■□□□□ 0.61
COPS3-217ENST00000583160 POTEDQ86YR6 584 aa17.71■□□□□ 0.43
COPS3-217ENST00000583160 SCAF1Q9H7N4 1312 aaKnown RBP17.71■□□□□ 0.42
COPS3-217ENST00000583160 PPP4R3CPQ6ZMV5 832 aa17.68■□□□□ 0.42
COPS3-217ENST00000583160 MAPK8IP2Q13387 824 aaPredicted RBP17.67■□□□□ 0.42
COPS3-217ENST00000583160 DMRT2Q9Y5R5 561 aa17.44■□□□□ 0.38
COPS3-217ENST00000583160 CNKSR2Q8WXI2 1034 aa17.24■□□□□ 0.35
COPS3-217ENST00000583160 NCBP3Q53F19 620 aaKnown RBP17.13■□□□□ 0.33
COPS3-217ENST00000583160 HOXD11P31277 338 aaPredicted RBP16.97■□□□□ 0.31
COPS3-217ENST00000583160 RNF216Q9NWF9 866 aaPredicted RBP16.96■□□□□ 0.31
COPS3-217ENST00000583160 KCNA4P22459 653 aa16.94■□□□□ 0.3
COPS3-217ENST00000583160 NPM3O75607 178 aaKnown RBP16.88■□□□□ 0.29
COPS3-217ENST00000583160 DCAF8L1A6NGE4 600 aa16.74■□□□□ 0.27
COPS3-217ENST00000583160 DNAJC5BQ9UF47 199 aa16.39■□□□□ 0.21
COPS3-217ENST00000583160 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.2■□□□□ 0.18
COPS3-217ENST00000583160 RNF39Q9H2S5 420 aa16.16■□□□□ 0.18
COPS3-217ENST00000583160 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.16
COPS3-217ENST00000583160 SLC4A2P04920 1241 aa16■□□□□ 0.15
COPS3-217ENST00000583160 CACNB1Q02641 598 aaPredicted RBP15.97■□□□□ 0.15
COPS3-217ENST00000583160 C1QBPQ07021 282 aaKnown RBP15.96■□□□□ 0.15
COPS3-217ENST00000583160 U3KPZ7 1027 aaPredicted RBP15.88■□□□□ 0.13
COPS3-217ENST00000583160 FOXD4L1Q9NU39 408 aa15.67■□□□□ 0.1
COPS3-217ENST00000583160 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.59■□□□□ 0.09
COPS3-217ENST00000583160 MYCNP04198 464 aaPredicted RBP15.59■□□□□ 0.09
COPS3-217ENST00000583160 HNRNPUL2Q1KMD3 747 aaKnown RBP15.59■□□□□ 0.09
COPS3-217ENST00000583160 ZBTB22O15209 634 aa15.57■□□□□ 0.08
COPS3-217ENST00000583160 SPINK5Q9NQ38 1064 aaPredicted RBP15.54■□□□□ 0.08
COPS3-217ENST00000583160 SAMD1Q6SPF0 538 aaPredicted RBP15.52■□□□□ 0.08
COPS3-217ENST00000583160 CAPN15O75808 1086 aa15.5■□□□□ 0.07
COPS3-217ENST00000583160 APLP2Q06481 763 aa15.48■□□□□ 0.07
COPS3-217ENST00000583160 TRHP20396 242 aaPredicted RBP15.36■□□□□ 0.05
COPS3-217ENST00000583160 ZNF219Q9P2Y4 722 aaPredicted RBP15.32■□□□□ 0.04
COPS3-217ENST00000583160 EHMT2Q96KQ7 1210 aa15.31■□□□□ 0.04
COPS3-217ENST00000583160 DSG3P32926 999 aa15.29■□□□□ 0.04
COPS3-217ENST00000583160 CSRNP3Q8WYN3 585 aa15.27■□□□□ 0.04
COPS3-217ENST00000583160 ATF5Q9Y2D1 282 aaPredicted RBP15.21■□□□□ 0.03
COPS3-217ENST00000583160 ABCB7O75027 752 aa15.17■□□□□ 0.02
COPS3-217ENST00000583160 ATXN8OSP0DMR3 200 aa15.14■□□□□ 0.01
COPS3-217ENST00000583160 POLA2Q14181 598 aa15.04■□□□□ -0
COPS3-217ENST00000583160 ZBTB12Q9Y330 459 aaPredicted RBP14.74□□□□□ -0.05
COPS3-217ENST00000583160 FBLN2P98095 1184 aa14.59□□□□□ -0.07
COPS3-217ENST00000583160 RBM42Q9BTD8 480 aaKnown RBP14.57□□□□□ -0.08
COPS3-217ENST00000583160 OSCARQ8IYS5 282 aa14.53□□□□□ -0.08
COPS3-217ENST00000583160 MKRN4PQ13434 485 aaPredicted RBP14.52□□□□□ -0.09
COPS3-217ENST00000583160 AKT1S1Q96B36 256 aa14.34□□□□□ -0.11
COPS3-217ENST00000583160 SPDYE2BA6NHP3 402 aa14.33□□□□□ -0.12
COPS3-217ENST00000583160 SPDYE6P0CI01 402 aa14.33□□□□□ -0.12
COPS3-217ENST00000583160 SPDYE2Q495Y8 402 aa14.33□□□□□ -0.12
COPS3-217ENST00000583160 ZNF692Q9BU19 519 aaPredicted RBP14.26□□□□□ -0.13
COPS3-217ENST00000583160 REM2Q8IYK8 340 aaPredicted RBP14.21□□□□□ -0.13
COPS3-217ENST00000583160 SSUH2Q9Y2M2 353 aa14.18□□□□□ -0.14
COPS3-217ENST00000583160 CHRDL2Q6WN34 429 aa14.08□□□□□ -0.16
COPS3-217ENST00000583160 SPDYE4A6NLX3 237 aa14.07□□□□□ -0.16
COPS3-217ENST00000583160 PABPN1Q86U42 306 aaKnown RBP eCLIP14.05□□□□□ -0.16
COPS3-217ENST00000583160 PITPNM1O00562 1244 aa14.04□□□□□ -0.16
COPS3-217ENST00000583160 SPDYE1Q8NFV5 336 aaPredicted RBP13.99□□□□□ -0.17
COPS3-217ENST00000583160 POTEHQ6S545 545 aa13.97□□□□□ -0.17
COPS3-217ENST00000583160 CLEC11AQ9Y240 323 aa13.96□□□□□ -0.17
COPS3-217ENST00000583160 PIP4P2Q8N4L2 257 aa13.85□□□□□ -0.19
COPS3-217ENST00000583160 FXR2P51116 673 aaKnown RBP eCLIP13.84□□□□□ -0.19
COPS3-217ENST00000583160 FKBP8Q14318 412 aa13.82□□□□□ -0.2
COPS3-217ENST00000583160 PRR29P0C7W0 189 aa13.79□□□□□ -0.2
COPS3-217ENST00000583160 PROM2Q8N271 834 aa13.77□□□□□ -0.21
COPS3-217ENST00000583160 STAG3Q9UJ98 1225 aa13.76□□□□□ -0.21
COPS3-217ENST00000583160 PRKAR2AP13861 404 aaKnown RBP13.7□□□□□ -0.22
COPS3-217ENST00000583160 CHADLQ6NUI6 762 aa13.64□□□□□ -0.23
COPS3-217ENST00000583160 CREBZFQ9NS37 354 aa13.53□□□□□ -0.24
COPS3-217ENST00000583160 HAX1O00165 279 aa13.49□□□□□ -0.25
COPS3-217ENST00000583160 FARP1Q9Y4F1 1045 aaPredicted RBP13.48□□□□□ -0.25
COPS3-217ENST00000583160 MIER1Q8N108 512 aa13.4□□□□□ -0.26
COPS3-217ENST00000583160 FBXO3Q9UK99 471 aa13.4□□□□□ -0.26
COPS3-217ENST00000583160 C19orf67A6NJJ6 358 aa13.37□□□□□ -0.27
COPS3-217ENST00000583160 EVX2Q03828 476 aa13.36□□□□□ -0.27
COPS3-217ENST00000583160 MNX1P50219 401 aaPredicted RBP13.35□□□□□ -0.27
COPS3-217ENST00000583160 PLEKHG5O94827 1062 aa13.34□□□□□ -0.27
COPS3-217ENST00000583160 PLCD3Q8N3E9 789 aa13.33□□□□□ -0.28
COPS3-217ENST00000583160 NPM1P06748 294 aaKnown RBP eCLIP13.31□□□□□ -0.28
COPS3-217ENST00000583160 SP7Q8TDD2 431 aaPredicted RBP13.29□□□□□ -0.28
COPS3-217ENST00000583160 CD44P16070 742 aaKnown RBP13.28□□□□□ -0.28
COPS3-217ENST00000583160 VASPP50552 380 aaPredicted RBP13.21□□□□□ -0.29
COPS3-217ENST00000583160 ZBTB47Q9UFB7 747 aaPredicted RBP13.19□□□□□ -0.3
COPS3-217ENST00000583160 ZRANB1Q9UGI0 708 aa13.18□□□□□ -0.3
COPS3-217ENST00000583160 PAK3O75914 559 aaPredicted RBP13.15□□□□□ -0.3
COPS3-217ENST00000583160 GABBR2O75899 941 aa13.09□□□□□ -0.31
COPS3-217ENST00000583160 KLHL34Q8N239 644 aa13.09□□□□□ -0.31
COPS3-217ENST00000583160 TSPYL2Q9H2G4 693 aaPredicted RBP13.09□□□□□ -0.31
COPS3-217ENST00000583160 ZNF579Q8NAF0 562 aaKnown RBP13.08□□□□□ -0.32
COPS3-217ENST00000583160 RASEFQ8IZ41 740 aa13.07□□□□□ -0.32
COPS3-217ENST00000583160 NUBP1P53384 320 aa13.06□□□□□ -0.32
COPS3-217ENST00000583160 IFNLR1Q8IU57 520 aaPredicted RBP13.03□□□□□ -0.32
COPS3-217ENST00000583160 CLCN6P51797 869 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms