RNA–Protein interactions for RNA: ENST00000583038.5

ERBB2-214, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 2

Gene ERBB2, Length 4,930 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-214ENST00000583038 DCAF8L2P0C7V8 631 aa28.15■■■□□ 2.1
ERBB2-214ENST00000583038 NISCHQ9Y2I1 1504 aa27.23■■□□□ 1.95
ERBB2-214ENST00000583038 SUPT5HO00267 1087 aaKnown RBP26.84■■□□□ 1.89
ERBB2-214ENST00000583038 SHROOM4Q9ULL8 1493 aa26.24■■□□□ 1.79
ERBB2-214ENST00000583038 PELP1Q8IZL8 1130 aaKnown RBP25.79■■□□□ 1.72
ERBB2-214ENST00000583038 APLP2Q06481 763 aa25.75■■□□□ 1.71
ERBB2-214ENST00000583038 EHMT2Q96KQ7 1210 aa25.65■■□□□ 1.7
ERBB2-214ENST00000583038 FAM9AQ8IZU1 332 aaPredicted RBP25.39■■□□□ 1.66
ERBB2-214ENST00000583038 PCGF6Q9BYE7 350 aa25.09■■□□□ 1.61
ERBB2-214ENST00000583038 ZEB1P37275 1124 aaPredicted RBP25.08■■□□□ 1.61
ERBB2-214ENST00000583038 TRIM41Q8WV44 630 aa25.02■■□□□ 1.6
ERBB2-214ENST00000583038 CENPBP07199 599 aaPredicted RBP24.88■■□□□ 1.57
ERBB2-214ENST00000583038 TTBK1Q5TCY1 1321 aaPredicted RBP24.85■■□□□ 1.57
ERBB2-214ENST00000583038 CCER1Q8TC90 406 aaPredicted RBP24.76■■□□□ 1.55
ERBB2-214ENST00000583038 UBTFP17480 764 aaKnown RBP24.69■■□□□ 1.54
ERBB2-214ENST00000583038 RANGAP1P46060 587 aaPredicted RBP24.65■■□□□ 1.54
ERBB2-214ENST00000583038 ATP1B4Q9UN42 357 aaPredicted RBP24.57■■□□□ 1.52
ERBB2-214ENST00000583038 ERICH6Q7L0X2 663 aa24.47■■□□□ 1.51
ERBB2-214ENST00000583038 NEFLP07196 543 aa24.33■■□□□ 1.48
ERBB2-214ENST00000583038 TRIM26Q12899 539 aaPredicted RBP24.25■■□□□ 1.47
ERBB2-214ENST00000583038 MYT1Q01538 1121 aa24.01■■□□□ 1.43
ERBB2-214ENST00000583038 YTHDC1Q96MU7 727 aaKnown RBP23.98■■□□□ 1.43
ERBB2-214ENST00000583038 CHIC1Q5VXU3 224 aa23.95■■□□□ 1.42
ERBB2-214ENST00000583038 PPARGC1BQ86YN6 1023 aaKnown RBP23.94■■□□□ 1.42
ERBB2-214ENST00000583038 HRCP23327 699 aa23.91■■□□□ 1.42
ERBB2-214ENST00000583038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.77■■□□□ 1.4
ERBB2-214ENST00000583038 HNRNPUL2Q1KMD3 747 aaKnown RBP23.77■■□□□ 1.4
ERBB2-214ENST00000583038 ITGAEP38570 1179 aa23.74■■□□□ 1.39
ERBB2-214ENST00000583038 LOC105371045A0A1W2PR82 267 aa23.74■■□□□ 1.39
ERBB2-214ENST00000583038 MYT1LQ9UL68 1186 aa23.65■■□□□ 1.38
ERBB2-214ENST00000583038 DAXXQ9UER7 740 aaPredicted RBP23.55■■□□□ 1.36
ERBB2-214ENST00000583038 POLR3GLQ9BT43 218 aa23.54■■□□□ 1.36
ERBB2-214ENST00000583038 DIEXFQ68CQ4 756 aaKnown RBP23.32■■□□□ 1.32
ERBB2-214ENST00000583038 FAM50AQ14320 339 aaKnown RBP23.26■■□□□ 1.31
ERBB2-214ENST00000583038 ABCC9O60706 1549 aa23.25■■□□□ 1.31
ERBB2-214ENST00000583038 PABPN1Q86U42 306 aaKnown RBP eCLIP23.16■■□□□ 1.33e-12■□□□□ 11
ERBB2-214ENST00000583038 CNGB1Q14028 1251 aaPredicted RBP23.15■■□□□ 1.3
ERBB2-214ENST00000583038 TRIM52Q96A61 297 aa23.14■■□□□ 1.3
ERBB2-214ENST00000583038 SLC4A1APQ9BWU0 796 aaKnown RBP23.1■■□□□ 1.29
ERBB2-214ENST00000583038 CLSPNQ9HAW4 1339 aa23.02■■□□□ 1.28
ERBB2-214ENST00000583038 RTL5Q5HYW3 569 aaPredicted RBP23.01■■□□□ 1.27
ERBB2-214ENST00000583038 NEUROD1Q13562 356 aa22.98■■□□□ 1.27
ERBB2-214ENST00000583038 ANP32CO43423 234 aa22.97■■□□□ 1.27
ERBB2-214ENST00000583038 ZNF316A6NFI3 1004 aaPredicted RBP22.97■■□□□ 1.27
ERBB2-214ENST00000583038 CSRNP3Q8WYN3 585 aa22.93■■□□□ 1.26
ERBB2-214ENST00000583038 ZNF326Q5BKZ1 582 aaKnown RBP22.78■■□□□ 1.24
ERBB2-214ENST00000583038 FBLN2P98095 1184 aa22.75■■□□□ 1.23
ERBB2-214ENST00000583038 CDK11AQ9UQ88 783 aaPredicted RBP22.72■■□□□ 1.23
ERBB2-214ENST00000583038 GTF3C3Q9Y5Q9 886 aa22.71■■□□□ 1.23
ERBB2-214ENST00000583038 ZBTB47Q9UFB7 747 aaPredicted RBP22.7■■□□□ 1.22
ERBB2-214ENST00000583038 NEFMP07197 916 aa22.61■■□□□ 1.21
ERBB2-214ENST00000583038 P3H3Q8IVL6 736 aa22.59■■□□□ 1.21
ERBB2-214ENST00000583038 BCANQ96GW7 911 aa22.59■■□□□ 1.21
ERBB2-214ENST00000583038 ZCCHC6Q5VYS8 1495 aaKnown RBP22.53■■□□□ 1.2
ERBB2-214ENST00000583038 CANXP27824 592 aaKnown RBP22.52■■□□□ 1.2
ERBB2-214ENST00000583038 ACIN1Q9UKV3 1341 aaKnown RBP22.5■■□□□ 1.19
ERBB2-214ENST00000583038 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
ERBB2-214ENST00000583038 DCAF1Q9Y4B6 1507 aa22.47■■□□□ 1.19
ERBB2-214ENST00000583038 ZNF777Q9ULD5 760 aaPredicted RBP22.45■■□□□ 1.18
ERBB2-214ENST00000583038 TONSLQ96HA7 1378 aa22.45■■□□□ 1.18
ERBB2-214ENST00000583038 ARID3CA6NKF2 412 aa22.4■■□□□ 1.18
ERBB2-214ENST00000583038 ANP32AP39687 249 aaKnown RBP22.36■■□□□ 1.17
ERBB2-214ENST00000583038 ESF1Q9H501 851 aaKnown RBP22.27■■□□□ 1.16
ERBB2-214ENST00000583038 SLC24A1O60721 1099 aa22.26■■□□□ 1.15
ERBB2-214ENST00000583038 NPM1P06748 294 aaKnown RBP eCLIP22.22■■□□□ 1.15
ERBB2-214ENST00000583038 CCDC180Q9P1Z9 1646 aa22.21■■□□□ 1.15
ERBB2-214ENST00000583038 HNRNPUQ00839 825 aaKnown RBP eCLIP22.17■■□□□ 1.14
ERBB2-214ENST00000583038 EEA1Q15075 1411 aa22.15■■□□□ 1.14
ERBB2-214ENST00000583038 TSPY4P0CV99 314 aa22.15■■□□□ 1.14
ERBB2-214ENST00000583038 TSPY10P0CW01 314 aa22.15■■□□□ 1.14
ERBB2-214ENST00000583038 DDX10Q13206 875 aaKnown RBP22.15■■□□□ 1.14
ERBB2-214ENST00000583038 STAG3Q9UJ98 1225 aa22.13■■□□□ 1.13
ERBB2-214ENST00000583038 FKBP8Q14318 412 aa22.13■■□□□ 1.13
ERBB2-214ENST00000583038 MTUS2Q5JR59 1369 aa22.13■■□□□ 1.13
ERBB2-214ENST00000583038 CHGAP10645 457 aaKnown RBP22.12■■□□□ 1.13
ERBB2-214ENST00000583038 UPF2Q9HAU5 1272 aaKnown RBP22.1■■□□□ 1.13
ERBB2-214ENST00000583038 CLIP1P30622 1438 aa22.09■■□□□ 1.13
ERBB2-214ENST00000583038 BCL11AQ9H165 835 aa22.08■■□□□ 1.13
ERBB2-214ENST00000583038 TMC1Q8TDI8 760 aa22.08■■□□□ 1.12
ERBB2-214ENST00000583038 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.07■■□□□ 1.12
ERBB2-214ENST00000583038 FAM9BQ8IZU0 186 aa22.06■■□□□ 1.12
ERBB2-214ENST00000583038 CHIC2Q9UKJ5 165 aa22.04■■□□□ 1.12
ERBB2-214ENST00000583038 NPM2Q86SE8 214 aaKnown RBP22.02■■□□□ 1.12
ERBB2-214ENST00000583038 ANP32BQ92688 251 aaKnown RBP22■■□□□ 1.11
ERBB2-214ENST00000583038 HSP90AA1P07900 732 aaKnown RBP21.98■■□□□ 1.11
ERBB2-214ENST00000583038 RSF1Q96T23 1441 aaPredicted RBP21.97■■□□□ 1.11
ERBB2-214ENST00000583038 WDR43Q15061 677 aaKnown RBP eCLIP21.96■■□□□ 1.11
ERBB2-214ENST00000583038 MRS2Q9HD23 443 aa21.96■■□□□ 1.11
ERBB2-214ENST00000583038 CCDC136Q96JN2 1154 aa21.95■■□□□ 1.1
ERBB2-214ENST00000583038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.95■■□□□ 1.1
ERBB2-214ENST00000583038 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
ERBB2-214ENST00000583038 GOLGA3Q08378 1498 aa21.94■■□□□ 1.1
ERBB2-214ENST00000583038 RB1CC1Q8TDY2 1594 aa21.94■■□□□ 1.1
ERBB2-214ENST00000583038 EIF4G2P78344 907 aaKnown RBP eCLIP21.93■■□□□ 1.1
ERBB2-214ENST00000583038 KDM2AQ9Y2K7 1162 aa21.84■■□□□ 1.09
ERBB2-214ENST00000583038 CEP162Q5TB80 1403 aa21.84■■□□□ 1.09
ERBB2-214ENST00000583038 SALL2Q9Y467 1007 aaPredicted RBP21.83■■□□□ 1.09
ERBB2-214ENST00000583038 WRNQ14191 1432 aaPredicted RBP eCLIP21.82■■□□□ 1.08
ERBB2-214ENST00000583038 PLEKHD1A6NEE1 506 aa21.81■■□□□ 1.08
ERBB2-214ENST00000583038 KIF27Q86VH2 1401 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms