RNA–Protein interactions for RNA: ENST00000570001.5

PDXDC1-217, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 2

Gene PDXDC1, Length 4,828 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-217ENST00000570001 NISCHQ9Y2I1 1504 aa23.67■■□□□ 1.38
PDXDC1-217ENST00000570001 DCAF8L2P0C7V8 631 aa20.87■□□□□ 0.93
PDXDC1-217ENST00000570001 SHROOM4Q9ULL8 1493 aa20.59■□□□□ 0.89
PDXDC1-217ENST00000570001 SUPT5HO00267 1087 aaKnown RBP20.27■□□□□ 0.84
PDXDC1-217ENST00000570001 CCDC180Q9P1Z9 1646 aa20.07■□□□□ 0.8
PDXDC1-217ENST00000570001 ZCCHC6Q5VYS8 1495 aaKnown RBP19.85■□□□□ 0.77
PDXDC1-217ENST00000570001 ABCC9O60706 1549 aa19.42■□□□□ 0.7
PDXDC1-217ENST00000570001 DCAF1Q9Y4B6 1507 aa19.24■□□□□ 0.67
PDXDC1-217ENST00000570001 CHIC1Q5VXU3 224 aa19.11■□□□□ 0.65
PDXDC1-217ENST00000570001 SCRIBQ14160 1630 aa19.09■□□□□ 0.65
PDXDC1-217ENST00000570001 TRIM41Q8WV44 630 aa18.9■□□□□ 0.62
PDXDC1-217ENST00000570001 NACADO15069 1562 aa18.88■□□□□ 0.61
PDXDC1-217ENST00000570001 FAM9AQ8IZU1 332 aaPredicted RBP18.83■□□□□ 0.61
PDXDC1-217ENST00000570001 EHMT2Q96KQ7 1210 aa18.82■□□□□ 0.6
PDXDC1-217ENST00000570001 MYO15BQ96JP2 1530 aa18.79■□□□□ 0.6
PDXDC1-217ENST00000570001 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
PDXDC1-217ENST00000570001 PABPN1Q86U42 306 aaKnown RBP eCLIP18.7■□□□□ 0.588e-6■□□□□ 8.9
PDXDC1-217ENST00000570001 RSF1Q96T23 1441 aaPredicted RBP18.68■□□□□ 0.58
PDXDC1-217ENST00000570001 LOC105371045A0A1W2PR82 267 aa18.64■□□□□ 0.57
PDXDC1-217ENST00000570001 PCGF6Q9BYE7 350 aa18.59■□□□□ 0.57
PDXDC1-217ENST00000570001 CECR2Q9BXF3 1484 aa18.49■□□□□ 0.55
PDXDC1-217ENST00000570001 MROH2BQ7Z745 1585 aa18.35■□□□□ 0.53
PDXDC1-217ENST00000570001 BAZ1AQ9NRL2 1556 aaPredicted RBP18.33■□□□□ 0.53
PDXDC1-217ENST00000570001 UBTFP17480 764 aaKnown RBP18.23■□□□□ 0.51
PDXDC1-217ENST00000570001 TRIM26Q12899 539 aaPredicted RBP18.22■□□□□ 0.51
PDXDC1-217ENST00000570001 WIZO95785 1651 aa18.18■□□□□ 0.5
PDXDC1-217ENST00000570001 TTBK1Q5TCY1 1321 aaPredicted RBP18.13■□□□□ 0.49
PDXDC1-217ENST00000570001 HRCP23327 699 aa18.11■□□□□ 0.49
PDXDC1-217ENST00000570001 PPARGC1BQ86YN6 1023 aaKnown RBP18.09■□□□□ 0.49
PDXDC1-217ENST00000570001 APLP2Q06481 763 aa18.07■□□□□ 0.48
PDXDC1-217ENST00000570001 RANGAP1P46060 587 aaPredicted RBP18.06■□□□□ 0.48
PDXDC1-217ENST00000570001 SMARCA4P51532 1647 aa18.03■□□□□ 0.48
PDXDC1-217ENST00000570001 TOP2AP11388 1531 aaKnown RBP18■□□□□ 0.47
PDXDC1-217ENST00000570001 CCDC88BA6NC98 1476 aa17.98■□□□□ 0.47
PDXDC1-217ENST00000570001 BAZ1BQ9UIG0 1483 aaKnown RBP17.96■□□□□ 0.47
PDXDC1-217ENST00000570001 CSRNP3Q8WYN3 585 aa17.94■□□□□ 0.46
PDXDC1-217ENST00000570001 ZEB1P37275 1124 aaPredicted RBP17.93■□□□□ 0.46
PDXDC1-217ENST00000570001 CCER1Q8TC90 406 aaPredicted RBP17.82■□□□□ 0.44
PDXDC1-217ENST00000570001 WRNQ14191 1432 aaPredicted RBP eCLIP17.82■□□□□ 0.44
PDXDC1-217ENST00000570001 ABCC8Q09428 1581 aa17.82■□□□□ 0.44
PDXDC1-217ENST00000570001 SMARCA2P51531 1590 aa17.81■□□□□ 0.44
PDXDC1-217ENST00000570001 ATAD2BQ9ULI0 1458 aa17.78■□□□□ 0.44
PDXDC1-217ENST00000570001 UNC13AQ9UPW8 1703 aa17.78■□□□□ 0.44
PDXDC1-217ENST00000570001 BICRAQ9NZM4 1560 aa17.75■□□□□ 0.43
PDXDC1-217ENST00000570001 EEA1Q15075 1411 aa17.75■□□□□ 0.43
PDXDC1-217ENST00000570001 SOGA1O94964 1423 aa17.69■□□□□ 0.42
PDXDC1-217ENST00000570001 CEP162Q5TB80 1403 aa17.61■□□□□ 0.41
PDXDC1-217ENST00000570001 GOLGA3Q08378 1498 aa17.61■□□□□ 0.41
PDXDC1-217ENST00000570001 ATP1B4Q9UN42 357 aaPredicted RBP17.61■□□□□ 0.41
PDXDC1-217ENST00000570001 TNIKQ9UKE5 1360 aa17.59■□□□□ 0.41
PDXDC1-217ENST00000570001 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.59■□□□□ 0.41
PDXDC1-217ENST00000570001 HNRNPUL2Q1KMD3 747 aaKnown RBP17.54■□□□□ 0.4
PDXDC1-217ENST00000570001 CEP164Q9UPV0 1460 aa17.53■□□□□ 0.4
PDXDC1-217ENST00000570001 EIF4G1Q04637 1599 aaKnown RBP17.5■□□□□ 0.39
PDXDC1-217ENST00000570001 CLIP1P30622 1438 aa17.49■□□□□ 0.39
PDXDC1-217ENST00000570001 PEG3Q9GZU2 1588 aa17.47■□□□□ 0.39
PDXDC1-217ENST00000570001 RUSC2Q8N2Y8 1516 aa17.46■□□□□ 0.39
PDXDC1-217ENST00000570001 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
PDXDC1-217ENST00000570001 KIF27Q86VH2 1401 aa17.42■□□□□ 0.38
PDXDC1-217ENST00000570001 ITGAEP38570 1179 aa17.36■□□□□ 0.37
PDXDC1-217ENST00000570001 HMGXB3Q12766 1538 aa17.34■□□□□ 0.37
PDXDC1-217ENST00000570001 CADPSQ9ULU8 1353 aa17.33■□□□□ 0.37
PDXDC1-217ENST00000570001 SYNJ1O43426 1573 aa17.33■□□□□ 0.36
PDXDC1-217ENST00000570001 P3H3Q8IVL6 736 aa17.28■□□□□ 0.36
PDXDC1-217ENST00000570001 CUX2O14529 1486 aa17.27■□□□□ 0.35
PDXDC1-217ENST00000570001 RAPGEF2Q9Y4G8 1499 aa17.26■□□□□ 0.35
PDXDC1-217ENST00000570001 CFTRP13569 1480 aa17.23■□□□□ 0.35
PDXDC1-217ENST00000570001 VPS8Q8N3P4 1428 aa17.21■□□□□ 0.35
PDXDC1-217ENST00000570001 TOP2BQ02880 1626 aa17.18■□□□□ 0.34
PDXDC1-217ENST00000570001 FAM50AQ14320 339 aaKnown RBP17.17■□□□□ 0.34
PDXDC1-217ENST00000570001 CARMIL1Q5VZK9 1371 aa17.17■□□□□ 0.34
PDXDC1-217ENST00000570001 CC2D2AQ9P2K1 1620 aa17.15■□□□□ 0.34
PDXDC1-217ENST00000570001 KIF21BO75037 1637 aa17.14■□□□□ 0.33
PDXDC1-217ENST00000570001 FANCD2Q9BXW9 1451 aa17.13■□□□□ 0.33
PDXDC1-217ENST00000570001 CUX1P39880 1505 aa17.1■□□□□ 0.33
PDXDC1-217ENST00000570001 DIEXFQ68CQ4 756 aaKnown RBP17.08■□□□□ 0.33
PDXDC1-217ENST00000570001 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
PDXDC1-217ENST00000570001 FGD5Q6ZNL6 1462 aa17.06■□□□□ 0.32
PDXDC1-217ENST00000570001 CENPBP07199 599 aaPredicted RBP17.05■□□□□ 0.32
PDXDC1-217ENST00000570001 IGF1RP08069 1367 aa17.01■□□□□ 0.31
PDXDC1-217ENST00000570001 ERICH3Q5RHP9 1530 aa17■□□□□ 0.31
PDXDC1-217ENST00000570001 PRXQ9BXM0 1461 aa16.99■□□□□ 0.31
PDXDC1-217ENST00000570001 FBLN2P98095 1184 aa16.99■□□□□ 0.31
PDXDC1-217ENST00000570001 KANK4Q5T7N3 995 aaPredicted RBP16.98■□□□□ 0.31
PDXDC1-217ENST00000570001 BIVM-ERCC5R4GMW8 1640 aa16.98■□□□□ 0.31
PDXDC1-217ENST00000570001 ZNF316A6NFI3 1004 aaPredicted RBP16.98■□□□□ 0.31
PDXDC1-217ENST00000570001 TDRD9Q8NDG6 1382 aaKnown RBP16.97■□□□□ 0.31
PDXDC1-217ENST00000570001 NESP48681 1621 aa16.96■□□□□ 0.3
PDXDC1-217ENST00000570001 FHAD1B1AJZ9 1412 aa16.95■□□□□ 0.3
PDXDC1-217ENST00000570001 RAD54L2Q9Y4B4 1467 aa16.93■□□□□ 0.3
PDXDC1-217ENST00000570001 ARID3CA6NKF2 412 aa16.93■□□□□ 0.3
PDXDC1-217ENST00000570001 YTHDC1Q96MU7 727 aaKnown RBP16.93■□□□□ 0.3
PDXDC1-217ENST00000570001 MTUS2Q5JR59 1369 aa16.9■□□□□ 0.3
PDXDC1-217ENST00000570001 CCNB3Q8WWL7 1395 aa16.88■□□□□ 0.29
PDXDC1-217ENST00000570001 NEUROD1Q13562 356 aa16.87■□□□□ 0.29
PDXDC1-217ENST00000570001 TOPBP1Q92547 1522 aa16.85■□□□□ 0.29
PDXDC1-217ENST00000570001 ERCC6Q03468 1493 aa16.85■□□□□ 0.29
PDXDC1-217ENST00000570001 ARAP1Q96P48 1450 aa16.84■□□□□ 0.29
PDXDC1-217ENST00000570001 POLA1P09884 1462 aaPredicted RBP16.83■□□□□ 0.28
PDXDC1-217ENST00000570001 DNMBPQ6XZF7 1577 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms