RNA–Protein interactions for RNA: ENST00000567275.2

NIFKP4-201, Transcript of nucleolar protein interacting with the FHA domain of MKI67 pseudogene 4, humanhuman

BASIC

Gene NIFKP4, Length 1,192 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIFKP4-201ENST00000567275 AEBP2Q6ZN18 517 aaPredicted RBP44.89■■■■■ 4.78
NIFKP4-201ENST00000567275 CHIC1Q5VXU3 224 aa43.84■■■■■ 4.61
NIFKP4-201ENST00000567275 PHF23Q9BUL5 403 aaPredicted RBP38.51■■■■□ 3.76
NIFKP4-201ENST00000567275 SENP3Q9H4L4 574 aaPredicted RBP38.19■■■■□ 3.7
NIFKP4-201ENST00000567275 PLPPR3Q6T4P5 718 aa35.63■■■■□ 3.29
NIFKP4-201ENST00000567275 FOXD1Q16676 465 aa35.39■■■■□ 3.26
NIFKP4-201ENST00000567275 ADRA2BP18089 450 aa34.01■■■■□ 3.03
NIFKP4-201ENST00000567275 PPP6R1Q9UPN7 881 aa33.99■■■■□ 3.03
NIFKP4-201ENST00000567275 PIAS4Q8N2W9 510 aaPredicted RBP33.44■■■□□ 2.94
NIFKP4-201ENST00000567275 MSH5O43196 834 aa32.72■■■□□ 2.83
NIFKP4-201ENST00000567275 PPP4R3CPQ6ZMV5 832 aa31.37■■■□□ 2.61
NIFKP4-201ENST00000567275 SCAF1Q9H7N4 1312 aaKnown RBP31.2■■■□□ 2.58
NIFKP4-201ENST00000567275 MAPK8IP2Q13387 824 aaPredicted RBP30.85■■■□□ 2.53
NIFKP4-201ENST00000567275 NCBP3Q53F19 620 aaKnown RBP30.59■■■□□ 2.49
NIFKP4-201ENST00000567275 KCNA4P22459 653 aa30.57■■■□□ 2.48
NIFKP4-201ENST00000567275 CNKSR2Q8WXI2 1034 aa30.51■■■□□ 2.47
NIFKP4-201ENST00000567275 DMRT2Q9Y5R5 561 aa30.44■■■□□ 2.46
NIFKP4-201ENST00000567275 NPM3O75607 178 aaKnown RBP30.07■■■□□ 2.4
NIFKP4-201ENST00000567275 RNF216Q9NWF9 866 aaPredicted RBP29.91■■■□□ 2.38
NIFKP4-201ENST00000567275 POTEDQ86YR6 584 aa29.84■■■□□ 2.37
NIFKP4-201ENST00000567275 HOXD11P31277 338 aaPredicted RBP29.78■■■□□ 2.36
NIFKP4-201ENST00000567275 DCAF8L1A6NGE4 600 aa29.24■■■□□ 2.27
NIFKP4-201ENST00000567275 SLC4A1APQ9BWU0 796 aaKnown RBP29.15■■■□□ 2.26
NIFKP4-201ENST00000567275 DNAJC5BQ9UF47 199 aa29.13■■■□□ 2.25
NIFKP4-201ENST00000567275 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.48■■■□□ 2.15
NIFKP4-201ENST00000567275 SLC4A2P04920 1241 aa28.37■■■□□ 2.13
NIFKP4-201ENST00000567275 EHMT2Q96KQ7 1210 aa28.28■■■□□ 2.12
NIFKP4-201ENST00000567275 FOXD4L1Q9NU39 408 aa28.19■■■□□ 2.1
NIFKP4-201ENST00000567275 ZBTB22O15209 634 aa28.08■■■□□ 2.09
NIFKP4-201ENST00000567275 RNF39Q9H2S5 420 aa27.98■■■□□ 2.07
NIFKP4-201ENST00000567275 U3KPZ7 1027 aaPredicted RBP27.93■■■□□ 2.06
NIFKP4-201ENST00000567275 CSRNP3Q8WYN3 585 aa27.91■■■□□ 2.06
NIFKP4-201ENST00000567275 MYCNP04198 464 aaPredicted RBP27.83■■■□□ 2.05
NIFKP4-201ENST00000567275 C1QBPQ07021 282 aaKnown RBP27.68■■■□□ 2.02
NIFKP4-201ENST00000567275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.64■■■□□ 2.02
NIFKP4-201ENST00000567275 HNRNPUL2Q1KMD3 747 aaKnown RBP27.64■■■□□ 2.02
NIFKP4-201ENST00000567275 SAMD1Q6SPF0 538 aaPredicted RBP27.52■■■□□ 2
NIFKP4-201ENST00000567275 APLP2Q06481 763 aa27.4■■□□□ 1.98
NIFKP4-201ENST00000567275 CACNB1Q02641 598 aaPredicted RBP27.37■■□□□ 1.97
NIFKP4-201ENST00000567275 ATXN8OSP0DMR3 200 aa27.19■■□□□ 1.94
NIFKP4-201ENST00000567275 SPINK5Q9NQ38 1064 aaPredicted RBP27.17■■□□□ 1.94
NIFKP4-201ENST00000567275 CAPN15O75808 1086 aa27.14■■□□□ 1.94
NIFKP4-201ENST00000567275 ATF5Q9Y2D1 282 aaPredicted RBP27.01■■□□□ 1.91
NIFKP4-201ENST00000567275 TRHP20396 242 aaPredicted RBP27■■□□□ 1.91
NIFKP4-201ENST00000567275 ZNF219Q9P2Y4 722 aaPredicted RBP26.98■■□□□ 1.91
NIFKP4-201ENST00000567275 DSG3P32926 999 aa26.62■■□□□ 1.85
NIFKP4-201ENST00000567275 ABCB7O75027 752 aa26.6■■□□□ 1.85
NIFKP4-201ENST00000567275 POLA2Q14181 598 aa26.52■■□□□ 1.84
NIFKP4-201ENST00000567275 ZBTB12Q9Y330 459 aaPredicted RBP26.1■■□□□ 1.77
NIFKP4-201ENST00000567275 FBLN2P98095 1184 aa26■■□□□ 1.75
NIFKP4-201ENST00000567275 MKRN4PQ13434 485 aaPredicted RBP25.84■■□□□ 1.73
NIFKP4-201ENST00000567275 OSCARQ8IYS5 282 aa25.61■■□□□ 1.69
NIFKP4-201ENST00000567275 RBM42Q9BTD8 480 aaKnown RBP25.45■■□□□ 1.66
NIFKP4-201ENST00000567275 SPDYE2BA6NHP3 402 aa25.37■■□□□ 1.65
NIFKP4-201ENST00000567275 SPDYE6P0CI01 402 aa25.37■■□□□ 1.65
NIFKP4-201ENST00000567275 SPDYE2Q495Y8 402 aa25.37■■□□□ 1.65
NIFKP4-201ENST00000567275 SPDYE4A6NLX3 237 aa25.31■■□□□ 1.64
NIFKP4-201ENST00000567275 FKBP8Q14318 412 aa25.3■■□□□ 1.64
NIFKP4-201ENST00000567275 ZNF692Q9BU19 519 aaPredicted RBP25.29■■□□□ 1.64
NIFKP4-201ENST00000567275 SSUH2Q9Y2M2 353 aa25.12■■□□□ 1.61
NIFKP4-201ENST00000567275 AKT1S1Q96B36 256 aa25.08■■□□□ 1.61
NIFKP4-201ENST00000567275 PABPN1Q86U42 306 aaKnown RBP eCLIP24.94■■□□□ 1.58
NIFKP4-201ENST00000567275 REM2Q8IYK8 340 aaPredicted RBP24.83■■□□□ 1.57
NIFKP4-201ENST00000567275 PROM2Q8N271 834 aa24.78■■□□□ 1.56
NIFKP4-201ENST00000567275 SPDYE1Q8NFV5 336 aaPredicted RBP24.66■■□□□ 1.54
NIFKP4-201ENST00000567275 CLEC11AQ9Y240 323 aa24.58■■□□□ 1.53
NIFKP4-201ENST00000567275 PITPNM1O00562 1244 aa24.54■■□□□ 1.52
NIFKP4-201ENST00000567275 STAG3Q9UJ98 1225 aa24.54■■□□□ 1.52
NIFKP4-201ENST00000567275 FBXO3Q9UK99 471 aa24.45■■□□□ 1.5
NIFKP4-201ENST00000567275 CHRDL2Q6WN34 429 aa24.37■■□□□ 1.49
NIFKP4-201ENST00000567275 PRR29P0C7W0 189 aa24.34■■□□□ 1.49
NIFKP4-201ENST00000567275 VASPP50552 380 aaPredicted RBP24.07■■□□□ 1.44
NIFKP4-201ENST00000567275 FXR2P51116 673 aaKnown RBP eCLIP24.07■■□□□ 1.44
NIFKP4-201ENST00000567275 MIER1Q8N108 512 aa24.05■■□□□ 1.44
NIFKP4-201ENST00000567275 PIP4P2Q8N4L2 257 aa24.03■■□□□ 1.44
NIFKP4-201ENST00000567275 PLCD3Q8N3E9 789 aa24.02■■□□□ 1.44
NIFKP4-201ENST00000567275 PLEKHG5O94827 1062 aa23.99■■□□□ 1.43
NIFKP4-201ENST00000567275 PRKAR2AP13861 404 aaKnown RBP23.96■■□□□ 1.43
NIFKP4-201ENST00000567275 CREBZFQ9NS37 354 aa23.94■■□□□ 1.42
NIFKP4-201ENST00000567275 CHADLQ6NUI6 762 aa23.93■■□□□ 1.42
NIFKP4-201ENST00000567275 ZBTB47Q9UFB7 747 aaPredicted RBP23.76■■□□□ 1.39
NIFKP4-201ENST00000567275 KLHL34Q8N239 644 aa23.75■■□□□ 1.39
NIFKP4-201ENST00000567275 IFNLR1Q8IU57 520 aaPredicted RBP23.71■■□□□ 1.39
NIFKP4-201ENST00000567275 FARP1Q9Y4F1 1045 aaPredicted RBP23.71■■□□□ 1.39
NIFKP4-201ENST00000567275 POTEHQ6S545 545 aa23.65■■□□□ 1.38
NIFKP4-201ENST00000567275 MNX1P50219 401 aaPredicted RBP23.64■■□□□ 1.37
NIFKP4-201ENST00000567275 NPM1P06748 294 aaKnown RBP eCLIP23.63■■□□□ 1.37
NIFKP4-201ENST00000567275 SPOCK2Q92563 424 aa23.49■■□□□ 1.35
NIFKP4-201ENST00000567275 NUBP1P53384 320 aa23.35■■□□□ 1.33
NIFKP4-201ENST00000567275 HAX1O00165 279 aa23.33■■□□□ 1.33
NIFKP4-201ENST00000567275 RASEFQ8IZ41 740 aa23.29■■□□□ 1.32
NIFKP4-201ENST00000567275 PAK3O75914 559 aaPredicted RBP23.27■■□□□ 1.32
NIFKP4-201ENST00000567275 CD44P16070 742 aaKnown RBP23.27■■□□□ 1.32
NIFKP4-201ENST00000567275 C19orf67A6NJJ6 358 aa23.25■■□□□ 1.31
NIFKP4-201ENST00000567275 FAM212AQ96EL1 285 aa23.25■■□□□ 1.31
NIFKP4-201ENST00000567275 TSPYL2Q9H2G4 693 aaPredicted RBP23.23■■□□□ 1.31
NIFKP4-201ENST00000567275 DCAF8Q5TAQ9 597 aa23.22■■□□□ 1.31
NIFKP4-201ENST00000567275 CIZ1Q9ULV3 898 aaPredicted RBP23.18■■□□□ 1.3
NIFKP4-201ENST00000567275 GSE1Q14687 1217 aa23.16■■□□□ 1.3
NIFKP4-201ENST00000567275 ZRANB1Q9UGI0 708 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms