RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 AEBP2Q6ZN18 517 aaPredicted RBP15.69■□□□□ 0.1
HERPUD1-211ENST00000566550 CHIC1Q5VXU3 224 aa14.85□□□□□ -0.03
HERPUD1-211ENST00000566550 SENP3Q9H4L4 574 aaPredicted RBP13.59□□□□□ -0.23
HERPUD1-211ENST00000566550 PHF23Q9BUL5 403 aaPredicted RBP13.32□□□□□ -0.28
HERPUD1-211ENST00000566550 FOXD1Q16676 465 aa12.59□□□□□ -0.39
HERPUD1-211ENST00000566550 POTEDQ86YR6 584 aa12.06□□□□□ -0.48
HERPUD1-211ENST00000566550 MSH5O43196 834 aa12.01□□□□□ -0.49
HERPUD1-211ENST00000566550 PIAS4Q8N2W9 510 aaPredicted RBP11.77□□□□□ -0.53
HERPUD1-211ENST00000566550 PLPPR3Q6T4P5 718 aa11.73□□□□□ -0.53
HERPUD1-211ENST00000566550 ADRA2BP18089 450 aa11.51□□□□□ -0.57
HERPUD1-211ENST00000566550 PPP6R1Q9UPN7 881 aa11.51□□□□□ -0.57
HERPUD1-211ENST00000566550 SCAF1Q9H7N4 1312 aaKnown RBP10.73□□□□□ -0.69
HERPUD1-211ENST00000566550 DMRT2Q9Y5R5 561 aa10.68□□□□□ -0.7
HERPUD1-211ENST00000566550 MAPK8IP2Q13387 824 aaPredicted RBP10.63□□□□□ -0.71
HERPUD1-211ENST00000566550 CACNB1Q02641 598 aaPredicted RBP10.47□□□□□ -0.73
HERPUD1-211ENST00000566550 DCAF8L1A6NGE4 600 aa10.34□□□□□ -0.75
HERPUD1-211ENST00000566550 PPP4R3CPQ6ZMV5 832 aa10.2□□□□□ -0.78
HERPUD1-211ENST00000566550 HOXD11P31277 338 aaPredicted RBP10.18□□□□□ -0.78
HERPUD1-211ENST00000566550 RNF39Q9H2S5 420 aa10.14□□□□□ -0.79
HERPUD1-211ENST00000566550 CNKSR2Q8WXI2 1034 aa10.11□□□□□ -0.79
HERPUD1-211ENST00000566550 RNF216Q9NWF9 866 aaPredicted RBP10.08□□□□□ -0.8
HERPUD1-211ENST00000566550 C1QBPQ07021 282 aaKnown RBP10.05□□□□□ -0.8
HERPUD1-211ENST00000566550 DNAJC5BQ9UF47 199 aa9.95□□□□□ -0.82
HERPUD1-211ENST00000566550 NCBP3Q53F19 620 aaKnown RBP9.85□□□□□ -0.83
HERPUD1-211ENST00000566550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.79□□□□□ -0.84
HERPUD1-211ENST00000566550 NPM3O75607 178 aaKnown RBP9.55□□□□□ -0.88
HERPUD1-211ENST00000566550 CAPN15O75808 1086 aa9.47□□□□□ -0.89
HERPUD1-211ENST00000566550 POTEHQ6S545 545 aa9.44□□□□□ -0.9
HERPUD1-211ENST00000566550 U3KPZ7 1027 aaPredicted RBP9.44□□□□□ -0.9
HERPUD1-211ENST00000566550 DSG3P32926 999 aa9.41□□□□□ -0.9
HERPUD1-211ENST00000566550 APLP2Q06481 763 aa9.37□□□□□ -0.91
HERPUD1-211ENST00000566550 SPINK5Q9NQ38 1064 aaPredicted RBP9.37□□□□□ -0.91
HERPUD1-211ENST00000566550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.26□□□□□ -0.93
HERPUD1-211ENST00000566550 HNRNPUL2Q1KMD3 747 aaKnown RBP9.26□□□□□ -0.93
HERPUD1-211ENST00000566550 ZNF219Q9P2Y4 722 aaPredicted RBP9.26□□□□□ -0.93
HERPUD1-211ENST00000566550 TRHP20396 242 aaPredicted RBP9.25□□□□□ -0.93
HERPUD1-211ENST00000566550 ABCB7O75027 752 aa9.16□□□□□ -0.94
HERPUD1-211ENST00000566550 SAMD1Q6SPF0 538 aaPredicted RBP9.15□□□□□ -0.94
HERPUD1-211ENST00000566550 SLC4A2P04920 1241 aa9.14□□□□□ -0.95
HERPUD1-211ENST00000566550 KCNA4P22459 653 aa9.11□□□□□ -0.95
HERPUD1-211ENST00000566550 RBM42Q9BTD8 480 aaKnown RBP9.11□□□□□ -0.95
HERPUD1-211ENST00000566550 CHRDL2Q6WN34 429 aa8.93□□□□□ -0.98
HERPUD1-211ENST00000566550 POLA2Q14181 598 aa8.92□□□□□ -0.98
HERPUD1-211ENST00000566550 MYCNP04198 464 aaPredicted RBP8.91□□□□□ -0.98
HERPUD1-211ENST00000566550 ZBTB12Q9Y330 459 aaPredicted RBP8.81□□□□□ -1
HERPUD1-211ENST00000566550 AKT1S1Q96B36 256 aa8.8□□□□□ -1
HERPUD1-211ENST00000566550 SP7Q8TDD2 431 aaPredicted RBP8.74□□□□□ -1.01
HERPUD1-211ENST00000566550 REM2Q8IYK8 340 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-211ENST00000566550 FOXD4L1Q9NU39 408 aa8.67□□□□□ -1.02
HERPUD1-211ENST00000566550 HAX1O00165 279 aa8.63□□□□□ -1.03
HERPUD1-211ENST00000566550 SLC4A1APQ9BWU0 796 aaKnown RBP8.63□□□□□ -1.03
HERPUD1-211ENST00000566550 PIP4P2Q8N4L2 257 aa8.62□□□□□ -1.03
HERPUD1-211ENST00000566550 OSCARQ8IYS5 282 aa8.61□□□□□ -1.03
HERPUD1-211ENST00000566550 ATF5Q9Y2D1 282 aaPredicted RBP8.59□□□□□ -1.03
HERPUD1-211ENST00000566550 PITPNM1O00562 1244 aa8.55□□□□□ -1.04
HERPUD1-211ENST00000566550 FXR2P51116 673 aaKnown RBP eCLIP8.54□□□□□ -1.04
HERPUD1-211ENST00000566550 FBLN2P98095 1184 aa8.48□□□□□ -1.05
HERPUD1-211ENST00000566550 SPDYE2BA6NHP3 402 aa8.46□□□□□ -1.06
HERPUD1-211ENST00000566550 SPDYE6P0CI01 402 aa8.46□□□□□ -1.06
HERPUD1-211ENST00000566550 ATXN8OSP0DMR3 200 aa8.46□□□□□ -1.06
HERPUD1-211ENST00000566550 SPDYE2Q495Y8 402 aa8.46□□□□□ -1.06
HERPUD1-211ENST00000566550 SPDYE1Q8NFV5 336 aaPredicted RBP8.4□□□□□ -1.06
HERPUD1-211ENST00000566550 CLEC11AQ9Y240 323 aa8.39□□□□□ -1.07
HERPUD1-211ENST00000566550 PRKAR2AP13861 404 aaKnown RBP8.37□□□□□ -1.07
HERPUD1-211ENST00000566550 EVX2Q03828 476 aa8.33□□□□□ -1.08
HERPUD1-211ENST00000566550 ZNF692Q9BU19 519 aaPredicted RBP8.33□□□□□ -1.08
HERPUD1-211ENST00000566550 ZBTB22O15209 634 aa8.29□□□□□ -1.08
HERPUD1-211ENST00000566550 C19orf67A6NJJ6 358 aa8.28□□□□□ -1.08
HERPUD1-211ENST00000566550 EHMT2Q96KQ7 1210 aa8.27□□□□□ -1.09
HERPUD1-211ENST00000566550 SSUH2Q9Y2M2 353 aa8.25□□□□□ -1.09
HERPUD1-211ENST00000566550 PRR29P0C7W0 189 aa8.24□□□□□ -1.09
HERPUD1-211ENST00000566550 GABBR2O75899 941 aa8.23□□□□□ -1.09
HERPUD1-211ENST00000566550 LHX8Q68G74 356 aa8.21□□□□□ -1.1
HERPUD1-211ENST00000566550 MKRN4PQ13434 485 aaPredicted RBP8.18□□□□□ -1.1
HERPUD1-211ENST00000566550 CHADLQ6NUI6 762 aa8.18□□□□□ -1.1
HERPUD1-211ENST00000566550 CLCN6P51797 869 aa8.16□□□□□ -1.1
HERPUD1-211ENST00000566550 PABPN1Q86U42 306 aaKnown RBP eCLIP8.16□□□□□ -1.1
HERPUD1-211ENST00000566550 CD44P16070 742 aaKnown RBP8.1□□□□□ -1.11
HERPUD1-211ENST00000566550 FARP1Q9Y4F1 1045 aaPredicted RBP8.07□□□□□ -1.12
HERPUD1-211ENST00000566550 DCBLD2Q96PD2 775 aa8.05□□□□□ -1.12
HERPUD1-211ENST00000566550 STAG3Q9UJ98 1225 aa7.98□□□□□ -1.13
HERPUD1-211ENST00000566550 POTEIP0CG38 1075 aa7.97□□□□□ -1.13
HERPUD1-211ENST00000566550 ZRANB1Q9UGI0 708 aa7.95□□□□□ -1.14
HERPUD1-211ENST00000566550 PAK3O75914 559 aaPredicted RBP7.94□□□□□ -1.14
HERPUD1-211ENST00000566550 ZNF579Q8NAF0 562 aaKnown RBP7.94□□□□□ -1.14
HERPUD1-211ENST00000566550 PLSCR2Q9NRY7 297 aa7.93□□□□□ -1.14
HERPUD1-211ENST00000566550 NPM1P06748 294 aaKnown RBP eCLIP7.86□□□□□ -1.15
HERPUD1-211ENST00000566550 CREBZFQ9NS37 354 aa7.86□□□□□ -1.15
HERPUD1-211ENST00000566550 GALR2O43603 387 aaPredicted RBP7.82□□□□□ -1.16
HERPUD1-211ENST00000566550 SPDYE4A6NLX3 237 aa7.79□□□□□ -1.16
HERPUD1-211ENST00000566550 OTUD5Q96G74 571 aa7.76□□□□□ -1.17
HERPUD1-211ENST00000566550 PHF12Q96QT6 1004 aa7.76□□□□□ -1.17
HERPUD1-211ENST00000566550 CSRNP3Q8WYN3 585 aa7.75□□□□□ -1.17
HERPUD1-211ENST00000566550 MAMSTRQ6ZN01 415 aa7.74□□□□□ -1.17
HERPUD1-211ENST00000566550 POTEMA6NI47 508 aa7.73□□□□□ -1.17
HERPUD1-211ENST00000566550 SLC24A1O60721 1099 aa7.73□□□□□ -1.17
HERPUD1-211ENST00000566550 PCDH10Q9P2E7 1040 aa7.72□□□□□ -1.17
HERPUD1-211ENST00000566550 C7P10643 843 aa7.71□□□□□ -1.18
HERPUD1-211ENST00000566550 SLC39A7Q92504 469 aa7.71□□□□□ -1.18
HERPUD1-211ENST00000566550 POTEGQ6S5H5 508 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms