RNA–Protein interactions for RNA: ENST00000566328.2

SMG1-212, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-212ENST00000566328 AEBP2Q6ZN18 517 aaPredicted RBP19.03■□□□□ 0.64
SMG1-212ENST00000566328 CHIC1Q5VXU3 224 aa17.8■□□□□ 0.44
SMG1-212ENST00000566328 SENP3Q9H4L4 574 aaPredicted RBP16.27■□□□□ 0.2
SMG1-212ENST00000566328 PHF23Q9BUL5 403 aaPredicted RBP16.01■□□□□ 0.15
SMG1-212ENST00000566328 FOXD1Q16676 465 aa15.2■□□□□ 0.02
SMG1-212ENST00000566328 POTEDQ86YR6 584 aa14.51□□□□□ -0.09
SMG1-212ENST00000566328 MSH5O43196 834 aa14.34□□□□□ -0.11
SMG1-212ENST00000566328 PLPPR3Q6T4P5 718 aa14.27□□□□□ -0.13
SMG1-212ENST00000566328 PIAS4Q8N2W9 510 aaPredicted RBP14.13□□□□□ -0.15
SMG1-212ENST00000566328 PPP6R1Q9UPN7 881 aa13.98□□□□□ -0.17
SMG1-212ENST00000566328 ADRA2BP18089 450 aa13.92□□□□□ -0.18
SMG1-212ENST00000566328 MAPK8IP2Q13387 824 aaPredicted RBP12.87□□□□□ -0.35
SMG1-212ENST00000566328 DMRT2Q9Y5R5 561 aa12.86□□□□□ -0.35
SMG1-212ENST00000566328 SCAF1Q9H7N4 1312 aaKnown RBP12.84□□□□□ -0.35
SMG1-212ENST00000566328 CACNB1Q02641 598 aaPredicted RBP12.48□□□□□ -0.41
SMG1-212ENST00000566328 PPP4R3CPQ6ZMV5 832 aa12.46□□□□□ -0.41
SMG1-212ENST00000566328 DCAF8L1A6NGE4 600 aa12.32□□□□□ -0.44
SMG1-212ENST00000566328 HOXD11P31277 338 aaPredicted RBP12.27□□□□□ -0.45
SMG1-212ENST00000566328 CNKSR2Q8WXI2 1034 aa12.27□□□□□ -0.45
SMG1-212ENST00000566328 RNF39Q9H2S5 420 aa12.22□□□□□ -0.45
SMG1-212ENST00000566328 RNF216Q9NWF9 866 aaPredicted RBP12.16□□□□□ -0.46
SMG1-212ENST00000566328 NCBP3Q53F19 620 aaKnown RBP12.07□□□□□ -0.48
SMG1-212ENST00000566328 C1QBPQ07021 282 aaKnown RBP12.01□□□□□ -0.49
SMG1-212ENST00000566328 DNAJC5BQ9UF47 199 aa11.91□□□□□ -0.5
SMG1-212ENST00000566328 NPM3O75607 178 aaKnown RBP11.79□□□□□ -0.52
SMG1-212ENST00000566328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.69□□□□□ -0.54
SMG1-212ENST00000566328 KCNA4P22459 653 aa11.52□□□□□ -0.57
SMG1-212ENST00000566328 U3KPZ7 1027 aaPredicted RBP11.41□□□□□ -0.58
SMG1-212ENST00000566328 DSG3P32926 999 aa11.33□□□□□ -0.6
SMG1-212ENST00000566328 SPINK5Q9NQ38 1064 aaPredicted RBP11.33□□□□□ -0.6
SMG1-212ENST00000566328 CAPN15O75808 1086 aa11.31□□□□□ -0.6
SMG1-212ENST00000566328 POTEHQ6S545 545 aa11.31□□□□□ -0.6
SMG1-212ENST00000566328 SLC4A2P04920 1241 aa11.23□□□□□ -0.61
SMG1-212ENST00000566328 APLP2Q06481 763 aa11.22□□□□□ -0.61
SMG1-212ENST00000566328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.18□□□□□ -0.62
SMG1-212ENST00000566328 HNRNPUL2Q1KMD3 747 aaKnown RBP11.18□□□□□ -0.62
SMG1-212ENST00000566328 SAMD1Q6SPF0 538 aaPredicted RBP11.08□□□□□ -0.64
SMG1-212ENST00000566328 ZNF219Q9P2Y4 722 aaPredicted RBP11.08□□□□□ -0.64
SMG1-212ENST00000566328 TRHP20396 242 aaPredicted RBP11.06□□□□□ -0.64
SMG1-212ENST00000566328 ABCB7O75027 752 aa11.04□□□□□ -0.64
SMG1-212ENST00000566328 MYCNP04198 464 aaPredicted RBP10.96□□□□□ -0.65
SMG1-212ENST00000566328 SLC4A1APQ9BWU0 796 aaKnown RBP10.92□□□□□ -0.66
SMG1-212ENST00000566328 RBM42Q9BTD8 480 aaKnown RBP10.81□□□□□ -0.68
SMG1-212ENST00000566328 FOXD4L1Q9NU39 408 aa10.81□□□□□ -0.68
SMG1-212ENST00000566328 POLA2Q14181 598 aa10.76□□□□□ -0.69
SMG1-212ENST00000566328 CHRDL2Q6WN34 429 aa10.7□□□□□ -0.7
SMG1-212ENST00000566328 ZBTB12Q9Y330 459 aaPredicted RBP10.63□□□□□ -0.71
SMG1-212ENST00000566328 ATF5Q9Y2D1 282 aaPredicted RBP10.6□□□□□ -0.71
SMG1-212ENST00000566328 ZBTB22O15209 634 aa10.55□□□□□ -0.72
SMG1-212ENST00000566328 ATXN8OSP0DMR3 200 aa10.53□□□□□ -0.72
SMG1-212ENST00000566328 AKT1S1Q96B36 256 aa10.51□□□□□ -0.73
SMG1-212ENST00000566328 SP7Q8TDD2 431 aaPredicted RBP10.46□□□□□ -0.73
SMG1-212ENST00000566328 REM2Q8IYK8 340 aaPredicted RBP10.41□□□□□ -0.74
SMG1-212ENST00000566328 PIP4P2Q8N4L2 257 aa10.39□□□□□ -0.75
SMG1-212ENST00000566328 OSCARQ8IYS5 282 aa10.38□□□□□ -0.75
SMG1-212ENST00000566328 FBLN2P98095 1184 aa10.34□□□□□ -0.75
SMG1-212ENST00000566328 PITPNM1O00562 1244 aa10.31□□□□□ -0.76
SMG1-212ENST00000566328 FXR2P51116 673 aaKnown RBP eCLIP10.28□□□□□ -0.76
SMG1-212ENST00000566328 HAX1O00165 279 aa10.27□□□□□ -0.77
SMG1-212ENST00000566328 SPDYE2BA6NHP3 402 aa10.24□□□□□ -0.77
SMG1-212ENST00000566328 SPDYE6P0CI01 402 aa10.24□□□□□ -0.77
SMG1-212ENST00000566328 SPDYE2Q495Y8 402 aa10.24□□□□□ -0.77
SMG1-212ENST00000566328 EVX2Q03828 476 aa10.13□□□□□ -0.79
SMG1-212ENST00000566328 MKRN4PQ13434 485 aaPredicted RBP10.12□□□□□ -0.79
SMG1-212ENST00000566328 ZNF692Q9BU19 519 aaPredicted RBP10.12□□□□□ -0.79
SMG1-212ENST00000566328 SPDYE1Q8NFV5 336 aaPredicted RBP10.08□□□□□ -0.8
SMG1-212ENST00000566328 CSRNP3Q8WYN3 585 aa10.08□□□□□ -0.8
SMG1-212ENST00000566328 SSUH2Q9Y2M2 353 aa10.06□□□□□ -0.8
SMG1-212ENST00000566328 CLEC11AQ9Y240 323 aa10.04□□□□□ -0.8
SMG1-212ENST00000566328 PRKAR2AP13861 404 aaKnown RBP10.03□□□□□ -0.8
SMG1-212ENST00000566328 C19orf67A6NJJ6 358 aa9.97□□□□□ -0.81
SMG1-212ENST00000566328 EHMT2Q96KQ7 1210 aa9.96□□□□□ -0.82
SMG1-212ENST00000566328 PABPN1Q86U42 306 aaKnown RBP eCLIP9.94□□□□□ -0.82
SMG1-212ENST00000566328 PRR29P0C7W0 189 aa9.89□□□□□ -0.83
SMG1-212ENST00000566328 GABBR2O75899 941 aa9.88□□□□□ -0.83
SMG1-212ENST00000566328 CHADLQ6NUI6 762 aa9.85□□□□□ -0.83
SMG1-212ENST00000566328 LHX8Q68G74 356 aa9.8□□□□□ -0.84
SMG1-212ENST00000566328 STAG3Q9UJ98 1225 aa9.75□□□□□ -0.85
SMG1-212ENST00000566328 SPDYE4A6NLX3 237 aa9.71□□□□□ -0.86
SMG1-212ENST00000566328 CD44P16070 742 aaKnown RBP9.69□□□□□ -0.86
SMG1-212ENST00000566328 FARP1Q9Y4F1 1045 aaPredicted RBP9.69□□□□□ -0.86
SMG1-212ENST00000566328 POTEIP0CG38 1075 aa9.68□□□□□ -0.86
SMG1-212ENST00000566328 CLCN6P51797 869 aa9.62□□□□□ -0.87
SMG1-212ENST00000566328 CREBZFQ9NS37 354 aa9.57□□□□□ -0.88
SMG1-212ENST00000566328 ZNF579Q8NAF0 562 aaKnown RBP9.54□□□□□ -0.88
SMG1-212ENST00000566328 DCBLD2Q96PD2 775 aa9.54□□□□□ -0.88
SMG1-212ENST00000566328 PAK3O75914 559 aaPredicted RBP9.5□□□□□ -0.89
SMG1-212ENST00000566328 NPM1P06748 294 aaKnown RBP eCLIP9.5□□□□□ -0.89
SMG1-212ENST00000566328 ZRANB1Q9UGI0 708 aa9.5□□□□□ -0.89
SMG1-212ENST00000566328 PROM2Q8N271 834 aa9.44□□□□□ -0.9
SMG1-212ENST00000566328 GALR2O43603 387 aaPredicted RBP9.43□□□□□ -0.9
SMG1-212ENST00000566328 PLSCR2Q9NRY7 297 aa9.41□□□□□ -0.9
SMG1-212ENST00000566328 MNX1P50219 401 aaPredicted RBP9.39□□□□□ -0.91
SMG1-212ENST00000566328 OTUD5Q96G74 571 aa9.38□□□□□ -0.91
SMG1-212ENST00000566328 PLEKHG5O94827 1062 aa9.37□□□□□ -0.91
SMG1-212ENST00000566328 PHF12Q96QT6 1004 aa9.36□□□□□ -0.91
SMG1-212ENST00000566328 POTEB2H3BUK9 544 aa9.35□□□□□ -0.91
SMG1-212ENST00000566328 MIER1Q8N108 512 aa9.3□□□□□ -0.92
SMG1-212ENST00000566328 PELP1Q8IZL8 1130 aaKnown RBP9.29□□□□□ -0.92
SMG1-212ENST00000566328 TSPYL2Q9H2G4 693 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms