RNA–Protein interactions for RNA: ENST00000566254.1

CFDP1-206, Transcript of craniofacial development protein 1, humanhuman

TSL 3

Gene CFDP1, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFDP1-206ENST00000566254 AEBP2Q6ZN18 517 aaPredicted RBP30.17■■■□□ 2.42
CFDP1-206ENST00000566254 CHIC1Q5VXU3 224 aa30.05■■■□□ 2.4
CFDP1-206ENST00000566254 PHF23Q9BUL5 403 aaPredicted RBP26.51■■□□□ 1.83
CFDP1-206ENST00000566254 SENP3Q9H4L4 574 aaPredicted RBP25.46■■□□□ 1.67
CFDP1-206ENST00000566254 PLPPR3Q6T4P5 718 aa24.65■■□□□ 1.54
CFDP1-206ENST00000566254 FOXD1Q16676 465 aa23.58■■□□□ 1.37
CFDP1-206ENST00000566254 ADRA2BP18089 450 aa23.19■■□□□ 1.3
CFDP1-206ENST00000566254 PPP6R1Q9UPN7 881 aa23.19■■□□□ 1.3
CFDP1-206ENST00000566254 PIAS4Q8N2W9 510 aaPredicted RBP22.36■■□□□ 1.17
CFDP1-206ENST00000566254 KCNA4P22459 653 aa22.02■■□□□ 1.12
CFDP1-206ENST00000566254 NISCHQ9Y2I1 1504 aa21.97■■□□□ 1.11
CFDP1-206ENST00000566254 PPP4R3CPQ6ZMV5 832 aa21.82■■□□□ 1.08
CFDP1-206ENST00000566254 MSH5O43196 834 aa21.46■■□□□ 1.03
CFDP1-206ENST00000566254 NCBP3Q53F19 620 aaKnown RBP21.4■■□□□ 1.02
CFDP1-206ENST00000566254 SCAF1Q9H7N4 1312 aaKnown RBP21.17■□□□□ 0.98
CFDP1-206ENST00000566254 EHMT2Q96KQ7 1210 aa21.16■□□□□ 0.98
CFDP1-206ENST00000566254 NPM3O75607 178 aaKnown RBP21.12■□□□□ 0.97
CFDP1-206ENST00000566254 CNKSR2Q8WXI2 1034 aa21.06■□□□□ 0.96
CFDP1-206ENST00000566254 SLC4A1APQ9BWU0 796 aaKnown RBP21.06■□□□□ 0.96
CFDP1-206ENST00000566254 MAPK8IP2Q13387 824 aaPredicted RBP20.86■□□□□ 0.93
CFDP1-206ENST00000566254 CSRNP3Q8WYN3 585 aa20.68■□□□□ 0.9
CFDP1-206ENST00000566254 RNF216Q9NWF9 866 aaPredicted RBP20.5■□□□□ 0.87
CFDP1-206ENST00000566254 DNAJC5BQ9UF47 199 aa20.44■□□□□ 0.86
CFDP1-206ENST00000566254 DMRT2Q9Y5R5 561 aa20.44■□□□□ 0.86
CFDP1-206ENST00000566254 ABCC9O60706 1549 aa20.39■□□□□ 0.85
CFDP1-206ENST00000566254 ZBTB22O15209 634 aa20.29■□□□□ 0.84
CFDP1-206ENST00000566254 HOXD11P31277 338 aaPredicted RBP20.27■□□□□ 0.84
CFDP1-206ENST00000566254 FOXD4L1Q9NU39 408 aa20.07■□□□□ 0.8
CFDP1-206ENST00000566254 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
CFDP1-206ENST00000566254 SLC4A2P04920 1241 aa19.81■□□□□ 0.76
CFDP1-206ENST00000566254 MYCNP04198 464 aaPredicted RBP19.48■□□□□ 0.71
CFDP1-206ENST00000566254 DCAF8L1A6NGE4 600 aa19.47■□□□□ 0.71
CFDP1-206ENST00000566254 ATXN8OSP0DMR3 200 aa19.32■□□□□ 0.68
CFDP1-206ENST00000566254 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.27■□□□□ 0.682e-6■■■■□ 20.6
CFDP1-206ENST00000566254 RB1CC1Q8TDY2 1594 aa19.15■□□□□ 0.66
CFDP1-206ENST00000566254 U3KPZ7 1027 aaPredicted RBP19.07■□□□□ 0.64
CFDP1-206ENST00000566254 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
CFDP1-206ENST00000566254 HNRNPUL2Q1KMD3 747 aaKnown RBP19■□□□□ 0.63
CFDP1-206ENST00000566254 SAMD1Q6SPF0 538 aaPredicted RBP18.97■□□□□ 0.63
CFDP1-206ENST00000566254 PABPN1Q86U42 306 aaKnown RBP eCLIP18.94■□□□□ 0.62
CFDP1-206ENST00000566254 ATF5Q9Y2D1 282 aaPredicted RBP18.94■□□□□ 0.62
CFDP1-206ENST00000566254 NACADO15069 1562 aa18.89■□□□□ 0.62
CFDP1-206ENST00000566254 DCAF8L2P0C7V8 631 aa18.8■□□□□ 0.6
CFDP1-206ENST00000566254 UNC13AQ9UPW8 1703 aa18.7■□□□□ 0.58
CFDP1-206ENST00000566254 APLP2Q06481 763 aa18.64■□□□□ 0.57
CFDP1-206ENST00000566254 BICRAQ9NZM4 1560 aa18.64■□□□□ 0.57
CFDP1-206ENST00000566254 FKBP8Q14318 412 aa18.63■□□□□ 0.57
CFDP1-206ENST00000566254 ZNF219Q9P2Y4 722 aaPredicted RBP18.56■□□□□ 0.56
CFDP1-206ENST00000566254 POTEDQ86YR6 584 aa18.48■□□□□ 0.55
CFDP1-206ENST00000566254 RNF39Q9H2S5 420 aa18.48■□□□□ 0.55
CFDP1-206ENST00000566254 MYO15BQ96JP2 1530 aa18.47■□□□□ 0.55
CFDP1-206ENST00000566254 CECR2Q9BXF3 1484 aa18.39■□□□□ 0.54
CFDP1-206ENST00000566254 SPINK5Q9NQ38 1064 aaPredicted RBP18.36■□□□□ 0.53
CFDP1-206ENST00000566254 CC2D2AQ9P2K1 1620 aa18.36■□□□□ 0.53
CFDP1-206ENST00000566254 TRHP20396 242 aaPredicted RBP18.29■□□□□ 0.52
CFDP1-206ENST00000566254 C1QBPQ07021 282 aaKnown RBP18.28■□□□□ 0.52
CFDP1-206ENST00000566254 SHROOM4Q9ULL8 1493 aa18.27■□□□□ 0.52
CFDP1-206ENST00000566254 DNAJC5Q9H3Z4 198 aa18.23■□□□□ 0.51
CFDP1-206ENST00000566254 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.51
CFDP1-206ENST00000566254 CAPN15O75808 1086 aa18.21■□□□□ 0.51
CFDP1-206ENST00000566254 MKRN4PQ13434 485 aaPredicted RBP18.16■□□□□ 0.5
CFDP1-206ENST00000566254 POLA2Q14181 598 aa18.15■□□□□ 0.5
CFDP1-206ENST00000566254 SCRIBQ14160 1630 aa18.14■□□□□ 0.49
CFDP1-206ENST00000566254 ZCCHC6Q5VYS8 1495 aaKnown RBP18.12■□□□□ 0.49
CFDP1-206ENST00000566254 DCAF1Q9Y4B6 1507 aa18.08■□□□□ 0.49
CFDP1-206ENST00000566254 FBLN2P98095 1184 aa18.06■□□□□ 0.48
CFDP1-206ENST00000566254 RTN4Q9NQC3 1192 aaKnown RBP18.06■□□□□ 0.48
CFDP1-206ENST00000566254 AMER1Q5JTC6 1135 aaPredicted RBP18.05■□□□□ 0.48
CFDP1-206ENST00000566254 SPDYE4A6NLX3 237 aa18.02■□□□□ 0.48
CFDP1-206ENST00000566254 ABCB7O75027 752 aa17.93■□□□□ 0.46
CFDP1-206ENST00000566254 ZBTB12Q9Y330 459 aaPredicted RBP17.87■□□□□ 0.45
CFDP1-206ENST00000566254 PROM2Q8N271 834 aa17.84■□□□□ 0.45
CFDP1-206ENST00000566254 DSG3P32926 999 aa17.8■□□□□ 0.44
CFDP1-206ENST00000566254 FBXO3Q9UK99 471 aa17.78■□□□□ 0.44
CFDP1-206ENST00000566254 CUX2O14529 1486 aa17.7■□□□□ 0.42
CFDP1-206ENST00000566254 ERCC6Q03468 1493 aa17.63■□□□□ 0.41
CFDP1-206ENST00000566254 VASPP50552 380 aaPredicted RBP17.54■□□□□ 0.4
CFDP1-206ENST00000566254 CACNB1Q02641 598 aaPredicted RBP17.52■□□□□ 0.4
CFDP1-206ENST00000566254 OSCARQ8IYS5 282 aa17.5■□□□□ 0.39
CFDP1-206ENST00000566254 NCAPD3P42695 1498 aa17.48■□□□□ 0.39
CFDP1-206ENST00000566254 ZNF692Q9BU19 519 aaPredicted RBP17.47■□□□□ 0.39
CFDP1-206ENST00000566254 SPDYE2BA6NHP3 402 aa17.46■□□□□ 0.39
CFDP1-206ENST00000566254 SPDYE6P0CI01 402 aa17.46■□□□□ 0.39
CFDP1-206ENST00000566254 SPDYE2Q495Y8 402 aa17.46■□□□□ 0.39
CFDP1-206ENST00000566254 SSUH2Q9Y2M2 353 aa17.41■□□□□ 0.38
CFDP1-206ENST00000566254 NESP48681 1621 aa17.39■□□□□ 0.38
CFDP1-206ENST00000566254 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
CFDP1-206ENST00000566254 IFNLR1Q8IU57 520 aaPredicted RBP17.36■□□□□ 0.37
CFDP1-206ENST00000566254 SLC24A1O60721 1099 aa17.3■□□□□ 0.36
CFDP1-206ENST00000566254 TRIM41Q8WV44 630 aa17.3■□□□□ 0.36
CFDP1-206ENST00000566254 HMGXB3Q12766 1538 aa17.29■□□□□ 0.36
CFDP1-206ENST00000566254 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
CFDP1-206ENST00000566254 THOC2Q8NI27 1593 aaKnown RBP17.27■□□□□ 0.35
CFDP1-206ENST00000566254 SMARCA4P51532 1647 aa17.23■□□□□ 0.35
CFDP1-206ENST00000566254 STAG3Q9UJ98 1225 aa17.23■□□□□ 0.35
CFDP1-206ENST00000566254 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
CFDP1-206ENST00000566254 LAMC3Q9Y6N6 1575 aa17.13■□□□□ 0.33
CFDP1-206ENST00000566254 KIF21AQ7Z4S6 1674 aa17.1■□□□□ 0.33
CFDP1-206ENST00000566254 BAZ1AQ9NRL2 1556 aaPredicted RBP17.07■□□□□ 0.32
CFDP1-206ENST00000566254 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms