RNA–Protein interactions for RNA: ENST00000565803.1

CHD9-216, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 3,625 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-216ENST00000565803 AEBP2Q6ZN18 517 aaPredicted RBP8.76□□□□□ -1.01
CHD9-216ENST00000565803 CHIC1Q5VXU3 224 aa8.67□□□□□ -1.02
CHD9-216ENST00000565803 PHF23Q9BUL5 403 aaPredicted RBP7.67□□□□□ -1.18
CHD9-216ENST00000565803 SENP3Q9H4L4 574 aaPredicted RBP7.32□□□□□ -1.24
CHD9-216ENST00000565803 PLPPR3Q6T4P5 718 aa6.97□□□□□ -1.29
CHD9-216ENST00000565803 FOXD1Q16676 465 aa6.81□□□□□ -1.32
CHD9-216ENST00000565803 NISCHQ9Y2I1 1504 aa6.62□□□□□ -1.35
CHD9-216ENST00000565803 PPP6R1Q9UPN7 881 aa6.62□□□□□ -1.35
CHD9-216ENST00000565803 CCDC180Q9P1Z9 1646 aa6.54□□□□□ -1.36
CHD9-216ENST00000565803 ADRA2BP18089 450 aa6.5□□□□□ -1.37
CHD9-216ENST00000565803 DNAJC5Q9H3Z4 198 aa6.39□□□□□ -1.39
CHD9-216ENST00000565803 DNAJC5BQ9UF47 199 aa6.34□□□□□ -1.39
CHD9-216ENST00000565803 SHROOM4Q9ULL8 1493 aa6.32□□□□□ -1.4
CHD9-216ENST00000565803 ABCC9O60706 1549 aa6.31□□□□□ -1.4
CHD9-216ENST00000565803 PIAS4Q8N2W9 510 aaPredicted RBP6.25□□□□□ -1.41
CHD9-216ENST00000565803 SLC24A1O60721 1099 aa6.24□□□□□ -1.41
CHD9-216ENST00000565803 MSH5O43196 834 aa6.22□□□□□ -1.41
CHD9-216ENST00000565803 RB1CC1Q8TDY2 1594 aa6.22□□□□□ -1.41
CHD9-216ENST00000565803 UNC13AQ9UPW8 1703 aa6.16□□□□□ -1.42
CHD9-216ENST00000565803 MYO15BQ96JP2 1530 aa6.15□□□□□ -1.42
CHD9-216ENST00000565803 NACADO15069 1562 aa6.14□□□□□ -1.43
CHD9-216ENST00000565803 CUX2O14529 1486 aa6.13□□□□□ -1.43
CHD9-216ENST00000565803 PPP4R3CPQ6ZMV5 832 aa6.13□□□□□ -1.43
CHD9-216ENST00000565803 EHMT2Q96KQ7 1210 aa6.13□□□□□ -1.43
CHD9-216ENST00000565803 BICRAQ9NZM4 1560 aa6.09□□□□□ -1.43
CHD9-216ENST00000565803 KCNA4P22459 653 aa6.08□□□□□ -1.44
CHD9-216ENST00000565803 POTEDQ86YR6 584 aa6.06□□□□□ -1.44
CHD9-216ENST00000565803 CNKSR2Q8WXI2 1034 aa6□□□□□ -1.45
CHD9-216ENST00000565803 CC2D2AQ9P2K1 1620 aa5.98□□□□□ -1.45
CHD9-216ENST00000565803 NPM3O75607 178 aaKnown RBP5.97□□□□□ -1.45
CHD9-216ENST00000565803 DMRT2Q9Y5R5 561 aa5.97□□□□□ -1.45
CHD9-216ENST00000565803 HOXD11P31277 338 aaPredicted RBP5.96□□□□□ -1.46
CHD9-216ENST00000565803 NCBP3Q53F19 620 aaKnown RBP5.93□□□□□ -1.46
CHD9-216ENST00000565803 RNF216Q9NWF9 866 aaPredicted RBP5.93□□□□□ -1.46
CHD9-216ENST00000565803 SCAF1Q9H7N4 1312 aaKnown RBP5.92□□□□□ -1.46
CHD9-216ENST00000565803 CECR2Q9BXF3 1484 aa5.91□□□□□ -1.46
CHD9-216ENST00000565803 EIF4G1Q04637 1599 aaKnown RBP5.88□□□□□ -1.47
CHD9-216ENST00000565803 MAPK8IP2Q13387 824 aaPredicted RBP5.87□□□□□ -1.47
CHD9-216ENST00000565803 DCAF1Q9Y4B6 1507 aa5.8□□□□□ -1.48
CHD9-216ENST00000565803 THOC2Q8NI27 1593 aaKnown RBP5.79□□□□□ -1.48
CHD9-216ENST00000565803 ZBTB22O15209 634 aa5.74□□□□□ -1.49
CHD9-216ENST00000565803 SLC4A1APQ9BWU0 796 aaKnown RBP5.73□□□□□ -1.49
CHD9-216ENST00000565803 CSRNP3Q8WYN3 585 aa5.73□□□□□ -1.49
CHD9-216ENST00000565803 RTN4Q9NQC3 1192 aaKnown RBP5.69□□□□□ -1.5
CHD9-216ENST00000565803 SLC4A2P04920 1241 aa5.69□□□□□ -1.5
CHD9-216ENST00000565803 HMGXB3Q12766 1538 aa5.62□□□□□ -1.51
CHD9-216ENST00000565803 FOXD4L1Q9NU39 408 aa5.6□□□□□ -1.51
CHD9-216ENST00000565803 BAZ1AQ9NRL2 1556 aaPredicted RBP5.6□□□□□ -1.51
CHD9-216ENST00000565803 LAMC3Q9Y6N6 1575 aa5.6□□□□□ -1.51
CHD9-216ENST00000565803 NCAPD3P42695 1498 aa5.59□□□□□ -1.51
CHD9-216ENST00000565803 RIMBP3CA6NJZ7 1639 aa5.59□□□□□ -1.52
CHD9-216ENST00000565803 RIMBP3BA6NNM3 1639 aa5.59□□□□□ -1.52
CHD9-216ENST00000565803 RIMBP3Q9UFD9 1639 aa5.59□□□□□ -1.52
CHD9-216ENST00000565803 WDR62O43379 1518 aa5.58□□□□□ -1.52
CHD9-216ENST00000565803 ATXN8OSP0DMR3 200 aa5.57□□□□□ -1.52
CHD9-216ENST00000565803 DAXXQ9UER7 740 aaPredicted RBP5.56□□□□□ -1.52
CHD9-216ENST00000565803 SMARCA2P51531 1590 aa5.56□□□□□ -1.52
CHD9-216ENST00000565803 AMER1Q5JTC6 1135 aaPredicted RBP5.55□□□□□ -1.52
CHD9-216ENST00000565803 PEG3Q9GZU2 1588 aa5.54□□□□□ -1.52
CHD9-216ENST00000565803 PABPN1Q86U42 306 aaKnown RBP eCLIP5.53□□□□□ -1.52
CHD9-216ENST00000565803 ERCC6Q03468 1493 aa5.5□□□□□ -1.53
CHD9-216ENST00000565803 KIF21AQ7Z4S6 1674 aa5.5□□□□□ -1.53
CHD9-216ENST00000565803 PRKCSHP14314 528 aaPredicted RBP5.49□□□□□ -1.53
CHD9-216ENST00000565803 MYCNP04198 464 aaPredicted RBP5.49□□□□□ -1.53
CHD9-216ENST00000565803 U3KPZ7 1027 aaPredicted RBP5.46□□□□□ -1.54
CHD9-216ENST00000565803 ZCCHC6Q5VYS8 1495 aaKnown RBP5.45□□□□□ -1.54
CHD9-216ENST00000565803 ERCC6L2Q5T890 1561 aa5.45□□□□□ -1.54
CHD9-216ENST00000565803 ARHGEF11O15085 1522 aa5.45□□□□□ -1.54
CHD9-216ENST00000565803 MRC2Q9UBG0 1479 aa5.43□□□□□ -1.54
CHD9-216ENST00000565803 RNF39Q9H2S5 420 aa5.42□□□□□ -1.54
CHD9-216ENST00000565803 RSF1Q96T23 1441 aaPredicted RBP5.42□□□□□ -1.54
CHD9-216ENST00000565803 RANGAP1P46060 587 aaPredicted RBP5.42□□□□□ -1.54
CHD9-216ENST00000565803 WDR97A6NE52 1622 aa5.41□□□□□ -1.54
CHD9-216ENST00000565803 PRDM2Q13029 1718 aa5.39□□□□□ -1.55
CHD9-216ENST00000565803 SCRIBQ14160 1630 aa5.38□□□□□ -1.55
CHD9-216ENST00000565803 MYT1Q01538 1121 aa5.38□□□□□ -1.55
CHD9-216ENST00000565803 PELP1Q8IZL8 1130 aaKnown RBP5.38□□□□□ -1.55
CHD9-216ENST00000565803 ATAD2BQ9ULI0 1458 aa5.37□□□□□ -1.55
CHD9-216ENST00000565803 ERICH6Q7L0X2 663 aa5.36□□□□□ -1.55
CHD9-216ENST00000565803 TRIM41Q8WV44 630 aa5.36□□□□□ -1.55
CHD9-216ENST00000565803 ATF5Q9Y2D1 282 aaPredicted RBP5.36□□□□□ -1.55
CHD9-216ENST00000565803 PDS5BQ9NTI5 1447 aa5.36□□□□□ -1.55
CHD9-216ENST00000565803 ARAP1Q96P48 1450 aa5.36□□□□□ -1.55
CHD9-216ENST00000565803 CLASP1Q7Z460 1538 aa5.34□□□□□ -1.55
CHD9-216ENST00000565803 NESP48681 1621 aa5.34□□□□□ -1.55
CHD9-216ENST00000565803 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.33□□□□□ -1.56
CHD9-216ENST00000565803 TULP1O00294 542 aaPredicted RBP5.33□□□□□ -1.56
CHD9-216ENST00000565803 HNRNPUL2Q1KMD3 747 aaKnown RBP5.33□□□□□ -1.56
CHD9-216ENST00000565803 SAMD1Q6SPF0 538 aaPredicted RBP5.33□□□□□ -1.56
CHD9-216ENST00000565803 SMARCA4P51532 1647 aa5.32□□□□□ -1.56
CHD9-216ENST00000565803 TTBK1Q5TCY1 1321 aaPredicted RBP5.31□□□□□ -1.56
CHD9-216ENST00000565803 C1QBPQ07021 282 aaKnown RBP5.3□□□□□ -1.56
CHD9-216ENST00000565803 OSCARQ8IYS5 282 aa5.3□□□□□ -1.56
CHD9-216ENST00000565803 PROM2Q8N271 834 aa5.3□□□□□ -1.56
CHD9-216ENST00000565803 ILDR1Q86SU0 546 aaPredicted RBP5.29□□□□□ -1.56
CHD9-216ENST00000565803 KIF13AQ9H1H9 1805 aa5.29□□□□□ -1.56
CHD9-216ENST00000565803 TPRNQ4KMQ1 711 aa5.28□□□□□ -1.56
CHD9-216ENST00000565803 TIMELESSQ9UNS1 1208 aa5.28□□□□□ -1.56
CHD9-216ENST00000565803 CHD1O14646 1710 aa5.27□□□□□ -1.57
CHD9-216ENST00000565803 ARXQ96QS3 562 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms