RNA–Protein interactions for RNA: ENST00000564582.2

CHD9-210, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 968 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-210ENST00000564582 AEBP2Q6ZN18 517 aaPredicted RBP23.07■■□□□ 1.28
CHD9-210ENST00000564582 CHIC1Q5VXU3 224 aa22.64■■□□□ 1.21
CHD9-210ENST00000564582 PHF23Q9BUL5 403 aaPredicted RBP19.83■□□□□ 0.77
CHD9-210ENST00000564582 SENP3Q9H4L4 574 aaPredicted RBP19.72■□□□□ 0.75
CHD9-210ENST00000564582 PLPPR3Q6T4P5 718 aa18.45■□□□□ 0.54
CHD9-210ENST00000564582 FOXD1Q16676 465 aa18.21■□□□□ 0.51
CHD9-210ENST00000564582 ADRA2BP18089 450 aa17.5■□□□□ 0.39
CHD9-210ENST00000564582 PPP6R1Q9UPN7 881 aa17.48■□□□□ 0.39
CHD9-210ENST00000564582 PIAS4Q8N2W9 510 aaPredicted RBP17.24■□□□□ 0.35
CHD9-210ENST00000564582 MSH5O43196 834 aa16.9■□□□□ 0.3
CHD9-210ENST00000564582 PPP4R3CPQ6ZMV5 832 aa16.22■□□□□ 0.19
CHD9-210ENST00000564582 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
CHD9-210ENST00000564582 NCBP3Q53F19 620 aaKnown RBP15.89■□□□□ 0.13
CHD9-210ENST00000564582 MAPK8IP2Q13387 824 aaPredicted RBP15.85■□□□□ 0.13
CHD9-210ENST00000564582 KCNA4P22459 653 aa15.81■□□□□ 0.12
CHD9-210ENST00000564582 CNKSR2Q8WXI2 1034 aa15.8■□□□□ 0.12
CHD9-210ENST00000564582 DMRT2Q9Y5R5 561 aa15.7■□□□□ 0.1
CHD9-210ENST00000564582 NPM3O75607 178 aaKnown RBP15.54■□□□□ 0.08
CHD9-210ENST00000564582 RNF216Q9NWF9 866 aaPredicted RBP15.48■□□□□ 0.07
CHD9-210ENST00000564582 POTEDQ86YR6 584 aa15.45■□□□□ 0.06
CHD9-210ENST00000564582 HOXD11P31277 338 aaPredicted RBP15.38■□□□□ 0.05
CHD9-210ENST00000564582 SLC4A1APQ9BWU0 796 aaKnown RBP15.13■□□□□ 0.01
CHD9-210ENST00000564582 DNAJC5BQ9UF47 199 aa15.12■□□□□ 0.01
CHD9-210ENST00000564582 DCAF8L1A6NGE4 600 aa15.07■□□□□ 0
CHD9-210ENST00000564582 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.71□□□□□ -0.05
CHD9-210ENST00000564582 EHMT2Q96KQ7 1210 aa14.68□□□□□ -0.06
CHD9-210ENST00000564582 SLC4A2P04920 1241 aa14.63□□□□□ -0.07
CHD9-210ENST00000564582 FOXD4L1Q9NU39 408 aa14.62□□□□□ -0.07
CHD9-210ENST00000564582 ZBTB22O15209 634 aa14.5□□□□□ -0.09
CHD9-210ENST00000564582 CSRNP3Q8WYN3 585 aa14.47□□□□□ -0.09
CHD9-210ENST00000564582 MYCNP04198 464 aaPredicted RBP14.43□□□□□ -0.1
CHD9-210ENST00000564582 RNF39Q9H2S5 420 aa14.41□□□□□ -0.1
CHD9-210ENST00000564582 U3KPZ7 1027 aaPredicted RBP14.41□□□□□ -0.1
CHD9-210ENST00000564582 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.37□□□□□ -0.11
CHD9-210ENST00000564582 HNRNPUL2Q1KMD3 747 aaKnown RBP14.37□□□□□ -0.11
CHD9-210ENST00000564582 C1QBPQ07021 282 aaKnown RBP14.3□□□□□ -0.12
CHD9-210ENST00000564582 SAMD1Q6SPF0 538 aaPredicted RBP14.28□□□□□ -0.12
CHD9-210ENST00000564582 APLP2Q06481 763 aa14.25□□□□□ -0.13
CHD9-210ENST00000564582 ATXN8OSP0DMR3 200 aa14.14□□□□□ -0.15
CHD9-210ENST00000564582 CACNB1Q02641 598 aaPredicted RBP14.07□□□□□ -0.16
CHD9-210ENST00000564582 CAPN15O75808 1086 aa14□□□□□ -0.17
CHD9-210ENST00000564582 ZNF219Q9P2Y4 722 aaPredicted RBP13.98□□□□□ -0.17
CHD9-210ENST00000564582 SPINK5Q9NQ38 1064 aaPredicted RBP13.97□□□□□ -0.17
CHD9-210ENST00000564582 TRHP20396 242 aaPredicted RBP13.92□□□□□ -0.18
CHD9-210ENST00000564582 ATF5Q9Y2D1 282 aaPredicted RBP13.91□□□□□ -0.18
CHD9-210ENST00000564582 DSG3P32926 999 aa13.71□□□□□ -0.21
CHD9-210ENST00000564582 ABCB7O75027 752 aa13.69□□□□□ -0.22
CHD9-210ENST00000564582 POLA2Q14181 598 aa13.69□□□□□ -0.22
CHD9-210ENST00000564582 ZBTB12Q9Y330 459 aaPredicted RBP13.56□□□□□ -0.24
CHD9-210ENST00000564582 FBLN2P98095 1184 aa13.49□□□□□ -0.25
CHD9-210ENST00000564582 MKRN4PQ13434 485 aaPredicted RBP13.33□□□□□ -0.28
CHD9-210ENST00000564582 OSCARQ8IYS5 282 aa13.21□□□□□ -0.29
CHD9-210ENST00000564582 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
CHD9-210ENST00000564582 SPDYE2BA6NHP3 402 aa13.15□□□□□ -0.3
CHD9-210ENST00000564582 SPDYE6P0CI01 402 aa13.15□□□□□ -0.3
CHD9-210ENST00000564582 SPDYE2Q495Y8 402 aa13.15□□□□□ -0.3
CHD9-210ENST00000564582 FKBP8Q14318 412 aa13.13□□□□□ -0.31
CHD9-210ENST00000564582 SPDYE4A6NLX3 237 aa13.12□□□□□ -0.31
CHD9-210ENST00000564582 ZNF692Q9BU19 519 aaPredicted RBP13.08□□□□□ -0.32
CHD9-210ENST00000564582 SSUH2Q9Y2M2 353 aa12.99□□□□□ -0.33
CHD9-210ENST00000564582 AKT1S1Q96B36 256 aa12.97□□□□□ -0.33
CHD9-210ENST00000564582 PABPN1Q86U42 306 aaKnown RBP eCLIP12.89□□□□□ -0.35
CHD9-210ENST00000564582 PROM2Q8N271 834 aa12.86□□□□□ -0.35
CHD9-210ENST00000564582 REM2Q8IYK8 340 aaPredicted RBP12.8□□□□□ -0.36
CHD9-210ENST00000564582 SPDYE1Q8NFV5 336 aaPredicted RBP12.76□□□□□ -0.37
CHD9-210ENST00000564582 STAG3Q9UJ98 1225 aa12.76□□□□□ -0.37
CHD9-210ENST00000564582 FBXO3Q9UK99 471 aa12.76□□□□□ -0.37
CHD9-210ENST00000564582 CLEC11AQ9Y240 323 aa12.69□□□□□ -0.38
CHD9-210ENST00000564582 PITPNM1O00562 1244 aa12.65□□□□□ -0.38
CHD9-210ENST00000564582 PRR29P0C7W0 189 aa12.59□□□□□ -0.39
CHD9-210ENST00000564582 CHRDL2Q6WN34 429 aa12.56□□□□□ -0.4
CHD9-210ENST00000564582 PLEKHG5O94827 1062 aa12.51□□□□□ -0.41
CHD9-210ENST00000564582 VASPP50552 380 aaPredicted RBP12.5□□□□□ -0.41
CHD9-210ENST00000564582 MIER1Q8N108 512 aa12.47□□□□□ -0.41
CHD9-210ENST00000564582 PLCD3Q8N3E9 789 aa12.47□□□□□ -0.41
CHD9-210ENST00000564582 FXR2P51116 673 aaKnown RBP eCLIP12.4□□□□□ -0.42
CHD9-210ENST00000564582 ZBTB47Q9UFB7 747 aaPredicted RBP12.39□□□□□ -0.43
CHD9-210ENST00000564582 PIP4P2Q8N4L2 257 aa12.37□□□□□ -0.43
CHD9-210ENST00000564582 CREBZFQ9NS37 354 aa12.36□□□□□ -0.43
CHD9-210ENST00000564582 PRKAR2AP13861 404 aaKnown RBP12.35□□□□□ -0.43
CHD9-210ENST00000564582 KLHL34Q8N239 644 aa12.33□□□□□ -0.44
CHD9-210ENST00000564582 CHADLQ6NUI6 762 aa12.31□□□□□ -0.44
CHD9-210ENST00000564582 IFNLR1Q8IU57 520 aaPredicted RBP12.28□□□□□ -0.44
CHD9-210ENST00000564582 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.45
CHD9-210ENST00000564582 FARP1Q9Y4F1 1045 aaPredicted RBP12.24□□□□□ -0.45
CHD9-210ENST00000564582 MNX1P50219 401 aaPredicted RBP12.21□□□□□ -0.45
CHD9-210ENST00000564582 SPOCK2Q92563 424 aa12.21□□□□□ -0.45
CHD9-210ENST00000564582 POTEHQ6S545 545 aa12.13□□□□□ -0.47
CHD9-210ENST00000564582 PAK3O75914 559 aaPredicted RBP12.08□□□□□ -0.48
CHD9-210ENST00000564582 NUBP1P53384 320 aa12.08□□□□□ -0.48
CHD9-210ENST00000564582 FAM212AQ96EL1 285 aa12.08□□□□□ -0.48
CHD9-210ENST00000564582 GSE1Q14687 1217 aa12.05□□□□□ -0.48
CHD9-210ENST00000564582 AMER1Q5JTC6 1135 aaPredicted RBP12.05□□□□□ -0.48
CHD9-210ENST00000564582 DCAF8Q5TAQ9 597 aa12.03□□□□□ -0.48
CHD9-210ENST00000564582 RASEFQ8IZ41 740 aa12.03□□□□□ -0.48
CHD9-210ENST00000564582 CIZ1Q9ULV3 898 aaPredicted RBP12.02□□□□□ -0.49
CHD9-210ENST00000564582 HAX1O00165 279 aa12.01□□□□□ -0.49
CHD9-210ENST00000564582 CD44P16070 742 aaKnown RBP12.01□□□□□ -0.49
CHD9-210ENST00000564582 C19orf67A6NJJ6 358 aa11.99□□□□□ -0.49
CHD9-210ENST00000564582 TSPYL2Q9H2G4 693 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms