RNA–Protein interactions for RNA: ENST00000563416.3

LINC00254-201, long intergenic non-protein coding RNA 254, humanhuman

TSL 3 BASIC

Gene LINC00254, Length 662 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00254-201ENST00000563416 AEBP2Q6ZN18 517 aaPredicted RBP26.5■■□□□ 1.83
LINC00254-201ENST00000563416 CHIC1Q5VXU3 224 aa25.93■■□□□ 1.74
LINC00254-201ENST00000563416 PHF23Q9BUL5 403 aaPredicted RBP22.73■■□□□ 1.23
LINC00254-201ENST00000563416 SENP3Q9H4L4 574 aaPredicted RBP22.62■■□□□ 1.21
LINC00254-201ENST00000563416 PLPPR3Q6T4P5 718 aa21.11■□□□□ 0.97
LINC00254-201ENST00000563416 FOXD1Q16676 465 aa20.91■□□□□ 0.94
LINC00254-201ENST00000563416 ADRA2BP18089 450 aa20.07■□□□□ 0.8
LINC00254-201ENST00000563416 PPP6R1Q9UPN7 881 aa20.06■□□□□ 0.8
LINC00254-201ENST00000563416 PIAS4Q8N2W9 510 aaPredicted RBP19.77■□□□□ 0.76
LINC00254-201ENST00000563416 MSH5O43196 834 aa19.4■□□□□ 0.7
LINC00254-201ENST00000563416 PPP4R3CPQ6ZMV5 832 aa18.55■□□□□ 0.56
LINC00254-201ENST00000563416 SCAF1Q9H7N4 1312 aaKnown RBP18.5■□□□□ 0.55
LINC00254-201ENST00000563416 MAPK8IP2Q13387 824 aaPredicted RBP18.19■□□□□ 0.5
LINC00254-201ENST00000563416 NCBP3Q53F19 620 aaKnown RBP18.14■□□□□ 0.49
LINC00254-201ENST00000563416 CNKSR2Q8WXI2 1034 aa18.08■□□□□ 0.48
LINC00254-201ENST00000563416 KCNA4P22459 653 aa18.05■□□□□ 0.48
LINC00254-201ENST00000563416 DMRT2Q9Y5R5 561 aa18.01■□□□□ 0.47
LINC00254-201ENST00000563416 NPM3O75607 178 aaKnown RBP17.77■□□□□ 0.44
LINC00254-201ENST00000563416 RNF216Q9NWF9 866 aaPredicted RBP17.72■□□□□ 0.43
LINC00254-201ENST00000563416 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
LINC00254-201ENST00000563416 HOXD11P31277 338 aaPredicted RBP17.62■□□□□ 0.41
LINC00254-201ENST00000563416 DNAJC5BQ9UF47 199 aa17.3■□□□□ 0.36
LINC00254-201ENST00000563416 DCAF8L1A6NGE4 600 aa17.28■□□□□ 0.36
LINC00254-201ENST00000563416 SLC4A1APQ9BWU0 796 aaKnown RBP17.24■□□□□ 0.35
LINC00254-201ENST00000563416 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.85■□□□□ 0.29
LINC00254-201ENST00000563416 SLC4A2P04920 1241 aa16.75■□□□□ 0.27
LINC00254-201ENST00000563416 FOXD4L1Q9NU39 408 aa16.69■□□□□ 0.26
LINC00254-201ENST00000563416 EHMT2Q96KQ7 1210 aa16.68■□□□□ 0.26
LINC00254-201ENST00000563416 ZBTB22O15209 634 aa16.55■□□□□ 0.24
LINC00254-201ENST00000563416 RNF39Q9H2S5 420 aa16.55■□□□□ 0.24
LINC00254-201ENST00000563416 U3KPZ7 1027 aaPredicted RBP16.5■□□□□ 0.23
LINC00254-201ENST00000563416 MYCNP04198 464 aaPredicted RBP16.49■□□□□ 0.23
LINC00254-201ENST00000563416 CSRNP3Q8WYN3 585 aa16.47■□□□□ 0.23
LINC00254-201ENST00000563416 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.42■□□□□ 0.22
LINC00254-201ENST00000563416 HNRNPUL2Q1KMD3 747 aaKnown RBP16.42■□□□□ 0.22
LINC00254-201ENST00000563416 C1QBPQ07021 282 aaKnown RBP16.41■□□□□ 0.22
LINC00254-201ENST00000563416 SAMD1Q6SPF0 538 aaPredicted RBP16.33■□□□□ 0.2
LINC00254-201ENST00000563416 APLP2Q06481 763 aa16.29■□□□□ 0.2
LINC00254-201ENST00000563416 CACNB1Q02641 598 aaPredicted RBP16.19■□□□□ 0.18
LINC00254-201ENST00000563416 ATXN8OSP0DMR3 200 aa16.13■□□□□ 0.17
LINC00254-201ENST00000563416 CAPN15O75808 1086 aa16.05■□□□□ 0.16
LINC00254-201ENST00000563416 SPINK5Q9NQ38 1064 aaPredicted RBP16.03■□□□□ 0.16
LINC00254-201ENST00000563416 ZNF219Q9P2Y4 722 aaPredicted RBP16■□□□□ 0.15
LINC00254-201ENST00000563416 TRHP20396 242 aaPredicted RBP15.95■□□□□ 0.14
LINC00254-201ENST00000563416 ATF5Q9Y2D1 282 aaPredicted RBP15.93■□□□□ 0.14
LINC00254-201ENST00000563416 DSG3P32926 999 aa15.74■□□□□ 0.11
LINC00254-201ENST00000563416 ABCB7O75027 752 aa15.69■□□□□ 0.1
LINC00254-201ENST00000563416 POLA2Q14181 598 aa15.67■□□□□ 0.1
LINC00254-201ENST00000563416 ZBTB12Q9Y330 459 aaPredicted RBP15.51■□□□□ 0.07
LINC00254-201ENST00000563416 FBLN2P98095 1184 aa15.42■□□□□ 0.06
LINC00254-201ENST00000563416 MKRN4PQ13434 485 aaPredicted RBP15.25■□□□□ 0.03
LINC00254-201ENST00000563416 OSCARQ8IYS5 282 aa15.13■□□□□ 0.01
LINC00254-201ENST00000563416 RBM42Q9BTD8 480 aaKnown RBP15.1■□□□□ 0.01
LINC00254-201ENST00000563416 SPDYE2BA6NHP3 402 aa15.05■□□□□ -0
LINC00254-201ENST00000563416 SPDYE6P0CI01 402 aa15.05■□□□□ -0
LINC00254-201ENST00000563416 SPDYE2Q495Y8 402 aa15.05■□□□□ -0
LINC00254-201ENST00000563416 SPDYE4A6NLX3 237 aa14.98□□□□□ -0.01
LINC00254-201ENST00000563416 ZNF692Q9BU19 519 aaPredicted RBP14.97□□□□□ -0.01
LINC00254-201ENST00000563416 FKBP8Q14318 412 aa14.95□□□□□ -0.02
LINC00254-201ENST00000563416 AKT1S1Q96B36 256 aa14.87□□□□□ -0.03
LINC00254-201ENST00000563416 SSUH2Q9Y2M2 353 aa14.87□□□□□ -0.03
LINC00254-201ENST00000563416 PABPN1Q86U42 306 aaKnown RBP eCLIP14.74□□□□□ -0.05
LINC00254-201ENST00000563416 REM2Q8IYK8 340 aaPredicted RBP14.68□□□□□ -0.06
LINC00254-201ENST00000563416 PROM2Q8N271 834 aa14.68□□□□□ -0.06
LINC00254-201ENST00000563416 SPDYE1Q8NFV5 336 aaPredicted RBP14.61□□□□□ -0.07
LINC00254-201ENST00000563416 STAG3Q9UJ98 1225 aa14.58□□□□□ -0.08
LINC00254-201ENST00000563416 CLEC11AQ9Y240 323 aa14.53□□□□□ -0.08
LINC00254-201ENST00000563416 PITPNM1O00562 1244 aa14.51□□□□□ -0.09
LINC00254-201ENST00000563416 FBXO3Q9UK99 471 aa14.51□□□□□ -0.09
LINC00254-201ENST00000563416 PRR29P0C7W0 189 aa14.41□□□□□ -0.1
LINC00254-201ENST00000563416 CHRDL2Q6WN34 429 aa14.41□□□□□ -0.1
LINC00254-201ENST00000563416 PLEKHG5O94827 1062 aa14.26□□□□□ -0.13
LINC00254-201ENST00000563416 VASPP50552 380 aaPredicted RBP14.24□□□□□ -0.13
LINC00254-201ENST00000563416 FXR2P51116 673 aaKnown RBP eCLIP14.24□□□□□ -0.13
LINC00254-201ENST00000563416 PLCD3Q8N3E9 789 aa14.23□□□□□ -0.13
LINC00254-201ENST00000563416 MIER1Q8N108 512 aa14.22□□□□□ -0.13
LINC00254-201ENST00000563416 PIP4P2Q8N4L2 257 aa14.2□□□□□ -0.14
LINC00254-201ENST00000563416 PRKAR2AP13861 404 aaKnown RBP14.16□□□□□ -0.14
LINC00254-201ENST00000563416 CREBZFQ9NS37 354 aa14.15□□□□□ -0.14
LINC00254-201ENST00000563416 ZBTB47Q9UFB7 747 aaPredicted RBP14.13□□□□□ -0.15
LINC00254-201ENST00000563416 CHADLQ6NUI6 762 aa14.12□□□□□ -0.15
LINC00254-201ENST00000563416 KLHL34Q8N239 644 aa14.05□□□□□ -0.16
LINC00254-201ENST00000563416 NPM1P06748 294 aaKnown RBP eCLIP14.03□□□□□ -0.16
LINC00254-201ENST00000563416 FARP1Q9Y4F1 1045 aaPredicted RBP14.02□□□□□ -0.17
LINC00254-201ENST00000563416 IFNLR1Q8IU57 520 aaPredicted RBP14□□□□□ -0.17
LINC00254-201ENST00000563416 POTEHQ6S545 545 aa13.99□□□□□ -0.17
LINC00254-201ENST00000563416 MNX1P50219 401 aaPredicted RBP13.97□□□□□ -0.17
LINC00254-201ENST00000563416 SPOCK2Q92563 424 aa13.9□□□□□ -0.18
LINC00254-201ENST00000563416 PAK3O75914 559 aaPredicted RBP13.81□□□□□ -0.2
LINC00254-201ENST00000563416 NUBP1P53384 320 aa13.8□□□□□ -0.2
LINC00254-201ENST00000563416 HAX1O00165 279 aa13.79□□□□□ -0.2
LINC00254-201ENST00000563416 FAM212AQ96EL1 285 aa13.79□□□□□ -0.2
LINC00254-201ENST00000563416 CD44P16070 742 aaKnown RBP13.77□□□□□ -0.21
LINC00254-201ENST00000563416 C19orf67A6NJJ6 358 aa13.76□□□□□ -0.21
LINC00254-201ENST00000563416 RASEFQ8IZ41 740 aa13.75□□□□□ -0.21
LINC00254-201ENST00000563416 GSE1Q14687 1217 aa13.74□□□□□ -0.21
LINC00254-201ENST00000563416 DCAF8Q5TAQ9 597 aa13.72□□□□□ -0.21
LINC00254-201ENST00000563416 TSPYL2Q9H2G4 693 aaPredicted RBP13.72□□□□□ -0.21
LINC00254-201ENST00000563416 CIZ1Q9ULV3 898 aaPredicted RBP13.69□□□□□ -0.22
LINC00254-201ENST00000563416 ZRANB1Q9UGI0 708 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms