RNA–Protein interactions for RNA: ENST00000562785.1

CHD9-205, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 359 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-205ENST00000562785 AEBP2Q6ZN18 517 aaPredicted RBP25.42■■□□□ 1.66
CHD9-205ENST00000562785 CHIC1Q5VXU3 224 aa25.26■■□□□ 1.63
CHD9-205ENST00000562785 PHF23Q9BUL5 403 aaPredicted RBP22.25■■□□□ 1.15
CHD9-205ENST00000562785 SENP3Q9H4L4 574 aaPredicted RBP21.5■■□□□ 1.03
CHD9-205ENST00000562785 PLPPR3Q6T4P5 718 aa20.7■□□□□ 0.9
CHD9-205ENST00000562785 FOXD1Q16676 465 aa19.89■□□□□ 0.77
CHD9-205ENST00000562785 PPP6R1Q9UPN7 881 aa19.47■□□□□ 0.71
CHD9-205ENST00000562785 ADRA2BP18089 450 aa19.46■□□□□ 0.71
CHD9-205ENST00000562785 PIAS4Q8N2W9 510 aaPredicted RBP18.85■□□□□ 0.61
CHD9-205ENST00000562785 KCNA4P22459 653 aa18.35■□□□□ 0.53
CHD9-205ENST00000562785 PPP4R3CPQ6ZMV5 832 aa18.28■□□□□ 0.52
CHD9-205ENST00000562785 MSH5O43196 834 aa18.19■□□□□ 0.5
CHD9-205ENST00000562785 NCBP3Q53F19 620 aaKnown RBP17.93■□□□□ 0.46
CHD9-205ENST00000562785 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
CHD9-205ENST00000562785 NPM3O75607 178 aaKnown RBP17.68■□□□□ 0.42
CHD9-205ENST00000562785 CNKSR2Q8WXI2 1034 aa17.68■□□□□ 0.42
CHD9-205ENST00000562785 SLC4A1APQ9BWU0 796 aaKnown RBP17.55■□□□□ 0.4
CHD9-205ENST00000562785 EHMT2Q96KQ7 1210 aa17.53■□□□□ 0.4
CHD9-205ENST00000562785 MAPK8IP2Q13387 824 aaPredicted RBP17.52■□□□□ 0.4
CHD9-205ENST00000562785 DMRT2Q9Y5R5 561 aa17.25■□□□□ 0.35
CHD9-205ENST00000562785 RNF216Q9NWF9 866 aaPredicted RBP17.24■□□□□ 0.35
CHD9-205ENST00000562785 DNAJC5BQ9UF47 199 aa17.18■□□□□ 0.34
CHD9-205ENST00000562785 CSRNP3Q8WYN3 585 aa17.17■□□□□ 0.34
CHD9-205ENST00000562785 HOXD11P31277 338 aaPredicted RBP17.07■□□□□ 0.32
CHD9-205ENST00000562785 ZBTB22O15209 634 aa16.91■□□□□ 0.3
CHD9-205ENST00000562785 FOXD4L1Q9NU39 408 aa16.79■□□□□ 0.28
CHD9-205ENST00000562785 SLC4A2P04920 1241 aa16.59■□□□□ 0.25
CHD9-205ENST00000562785 POTEDQ86YR6 584 aa16.42■□□□□ 0.22
CHD9-205ENST00000562785 DCAF8L1A6NGE4 600 aa16.39■□□□□ 0.21
CHD9-205ENST00000562785 MYCNP04198 464 aaPredicted RBP16.33■□□□□ 0.2
CHD9-205ENST00000562785 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.21■□□□□ 0.19
CHD9-205ENST00000562785 ATXN8OSP0DMR3 200 aa16.18■□□□□ 0.18
CHD9-205ENST00000562785 U3KPZ7 1027 aaPredicted RBP16.04■□□□□ 0.16
CHD9-205ENST00000562785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.98■□□□□ 0.15
CHD9-205ENST00000562785 HNRNPUL2Q1KMD3 747 aaKnown RBP15.98■□□□□ 0.15
CHD9-205ENST00000562785 SAMD1Q6SPF0 538 aaPredicted RBP15.95■□□□□ 0.14
CHD9-205ENST00000562785 ATF5Q9Y2D1 282 aaPredicted RBP15.84■□□□□ 0.13
CHD9-205ENST00000562785 APLP2Q06481 763 aa15.71■□□□□ 0.11
CHD9-205ENST00000562785 RNF39Q9H2S5 420 aa15.63■□□□□ 0.09
CHD9-205ENST00000562785 ZNF219Q9P2Y4 722 aaPredicted RBP15.55■□□□□ 0.08
CHD9-205ENST00000562785 FKBP8Q14318 412 aa15.47■□□□□ 0.07
CHD9-205ENST00000562785 C1QBPQ07021 282 aaKnown RBP15.46■□□□□ 0.07
CHD9-205ENST00000562785 SPINK5Q9NQ38 1064 aaPredicted RBP15.44■□□□□ 0.06
CHD9-205ENST00000562785 TRHP20396 242 aaPredicted RBP15.36■□□□□ 0.05
CHD9-205ENST00000562785 CAPN15O75808 1086 aa15.33■□□□□ 0.04
CHD9-205ENST00000562785 POLA2Q14181 598 aa15.22■□□□□ 0.03
CHD9-205ENST00000562785 MKRN4PQ13434 485 aaPredicted RBP15.2■□□□□ 0.02
CHD9-205ENST00000562785 FBLN2P98095 1184 aa15.15■□□□□ 0.02
CHD9-205ENST00000562785 ABCB7O75027 752 aa15.08■□□□□ 0
CHD9-205ENST00000562785 SPDYE4A6NLX3 237 aa15.05■□□□□ -0
CHD9-205ENST00000562785 ZBTB12Q9Y330 459 aaPredicted RBP15.05■□□□□ -0
CHD9-205ENST00000562785 DSG3P32926 999 aa15.01□□□□□ -0.01
CHD9-205ENST00000562785 PROM2Q8N271 834 aa14.93□□□□□ -0.02
CHD9-205ENST00000562785 AMER1Q5JTC6 1135 aaPredicted RBP14.89□□□□□ -0.03
CHD9-205ENST00000562785 CACNB1Q02641 598 aaPredicted RBP14.85□□□□□ -0.03
CHD9-205ENST00000562785 RTN4Q9NQC3 1192 aaKnown RBP14.85□□□□□ -0.03
CHD9-205ENST00000562785 FBXO3Q9UK99 471 aa14.82□□□□□ -0.04
CHD9-205ENST00000562785 OSCARQ8IYS5 282 aa14.71□□□□□ -0.05
CHD9-205ENST00000562785 SPDYE2BA6NHP3 402 aa14.67□□□□□ -0.06
CHD9-205ENST00000562785 SPDYE6P0CI01 402 aa14.67□□□□□ -0.06
CHD9-205ENST00000562785 SPDYE2Q495Y8 402 aa14.67□□□□□ -0.06
CHD9-205ENST00000562785 ZNF692Q9BU19 519 aaPredicted RBP14.65□□□□□ -0.06
CHD9-205ENST00000562785 SSUH2Q9Y2M2 353 aa14.63□□□□□ -0.07
CHD9-205ENST00000562785 VASPP50552 380 aaPredicted RBP14.61□□□□□ -0.07
CHD9-205ENST00000562785 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
CHD9-205ENST00000562785 IFNLR1Q8IU57 520 aaPredicted RBP14.44□□□□□ -0.1
CHD9-205ENST00000562785 STAG3Q9UJ98 1225 aa14.41□□□□□ -0.1
CHD9-205ENST00000562785 RBM42Q9BTD8 480 aaKnown RBP14.3□□□□□ -0.12
CHD9-205ENST00000562785 PLCD3Q8N3E9 789 aa14.22□□□□□ -0.13
CHD9-205ENST00000562785 AKT1S1Q96B36 256 aa14.22□□□□□ -0.13
CHD9-205ENST00000562785 KLHL34Q8N239 644 aa14.2□□□□□ -0.14
CHD9-205ENST00000562785 SPOCK2Q92563 424 aa14.19□□□□□ -0.14
CHD9-205ENST00000562785 MIER1Q8N108 512 aa14.18□□□□□ -0.14
CHD9-205ENST00000562785 SLC24A1O60721 1099 aa14.14□□□□□ -0.15
CHD9-205ENST00000562785 PKD2Q13563 968 aa14.14□□□□□ -0.15
CHD9-205ENST00000562785 SPDYE1Q8NFV5 336 aaPredicted RBP14.12□□□□□ -0.15
CHD9-205ENST00000562785 PLEKHG5O94827 1062 aa14.09□□□□□ -0.15
CHD9-205ENST00000562785 ZBTB47Q9UFB7 747 aaPredicted RBP14.08□□□□□ -0.16
CHD9-205ENST00000562785 REM2Q8IYK8 340 aaPredicted RBP14.07□□□□□ -0.16
CHD9-205ENST00000562785 CLEC11AQ9Y240 323 aa13.99□□□□□ -0.17
CHD9-205ENST00000562785 PRR29P0C7W0 189 aa13.95□□□□□ -0.18
CHD9-205ENST00000562785 ECM2O94769 699 aaPredicted RBP13.93□□□□□ -0.18
CHD9-205ENST00000562785 PITPNM1O00562 1244 aa13.9□□□□□ -0.18
CHD9-205ENST00000562785 DCAF8L2P0C7V8 631 aa13.9□□□□□ -0.18
CHD9-205ENST00000562785 CREBZFQ9NS37 354 aa13.9□□□□□ -0.18
CHD9-205ENST00000562785 CIZ1Q9ULV3 898 aaPredicted RBP13.86□□□□□ -0.19
CHD9-205ENST00000562785 MNX1P50219 401 aaPredicted RBP13.84□□□□□ -0.19
CHD9-205ENST00000562785 NUBP1P53384 320 aa13.83□□□□□ -0.2
CHD9-205ENST00000562785 TRIM41Q8WV44 630 aa13.81□□□□□ -0.2
CHD9-205ENST00000562785 RGL2O15211 777 aa13.8□□□□□ -0.2
CHD9-205ENST00000562785 GSE1Q14687 1217 aa13.78□□□□□ -0.2
CHD9-205ENST00000562785 PLCB2Q00722 1185 aa13.76□□□□□ -0.21
CHD9-205ENST00000562785 FAM212AQ96EL1 285 aa13.7□□□□□ -0.22
CHD9-205ENST00000562785 DCAF8Q5TAQ9 597 aa13.68□□□□□ -0.22
CHD9-205ENST00000562785 NPM1P06748 294 aaKnown RBP eCLIP13.67□□□□□ -0.22
CHD9-205ENST00000562785 RASEFQ8IZ41 740 aa13.66□□□□□ -0.22
CHD9-205ENST00000562785 BBXQ8WY36 941 aaPredicted RBP13.66□□□□□ -0.22
CHD9-205ENST00000562785 CHADLQ6NUI6 762 aa13.62□□□□□ -0.23
CHD9-205ENST00000562785 RNF25Q96BH1 459 aaPredicted RBP13.62□□□□□ -0.23
CHD9-205ENST00000562785 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms