RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 AEBP2Q6ZN18 517 aaPredicted RBP19.49■□□□□ 0.71
VPS35-203ENST00000562420 CHIC1Q5VXU3 224 aa18.31■□□□□ 0.52
VPS35-203ENST00000562420 SENP3Q9H4L4 574 aaPredicted RBP16.58■□□□□ 0.24
VPS35-203ENST00000562420 PHF23Q9BUL5 403 aaPredicted RBP16.4■□□□□ 0.22
VPS35-203ENST00000562420 FOXD1Q16676 465 aa15.53■□□□□ 0.08
VPS35-203ENST00000562420 POTEDQ86YR6 584 aa15.15■□□□□ 0.02
VPS35-203ENST00000562420 PLPPR3Q6T4P5 718 aa14.6□□□□□ -0.07
VPS35-203ENST00000562420 MSH5O43196 834 aa14.53□□□□□ -0.08
VPS35-203ENST00000562420 PIAS4Q8N2W9 510 aaPredicted RBP14.48□□□□□ -0.09
VPS35-203ENST00000562420 PPP6R1Q9UPN7 881 aa14.44□□□□□ -0.1
VPS35-203ENST00000562420 ADRA2BP18089 450 aa14.39□□□□□ -0.11
VPS35-203ENST00000562420 MAPK8IP2Q13387 824 aaPredicted RBP13.29□□□□□ -0.28
VPS35-203ENST00000562420 DMRT2Q9Y5R5 561 aa13.13□□□□□ -0.31
VPS35-203ENST00000562420 SCAF1Q9H7N4 1312 aaKnown RBP13.08□□□□□ -0.32
VPS35-203ENST00000562420 PPP4R3CPQ6ZMV5 832 aa12.81□□□□□ -0.36
VPS35-203ENST00000562420 CACNB1Q02641 598 aaPredicted RBP12.77□□□□□ -0.37
VPS35-203ENST00000562420 DCAF8L1A6NGE4 600 aa12.71□□□□□ -0.37
VPS35-203ENST00000562420 HOXD11P31277 338 aaPredicted RBP12.58□□□□□ -0.4
VPS35-203ENST00000562420 NCBP3Q53F19 620 aaKnown RBP12.54□□□□□ -0.4
VPS35-203ENST00000562420 CNKSR2Q8WXI2 1034 aa12.53□□□□□ -0.4
VPS35-203ENST00000562420 KCNA4P22459 653 aa12.5□□□□□ -0.41
VPS35-203ENST00000562420 RNF216Q9NWF9 866 aaPredicted RBP12.44□□□□□ -0.42
VPS35-203ENST00000562420 RNF39Q9H2S5 420 aa12.4□□□□□ -0.42
VPS35-203ENST00000562420 NPM3O75607 178 aaKnown RBP12.3□□□□□ -0.44
VPS35-203ENST00000562420 C1QBPQ07021 282 aaKnown RBP12.19□□□□□ -0.46
VPS35-203ENST00000562420 DNAJC5BQ9UF47 199 aa12.15□□□□□ -0.46
VPS35-203ENST00000562420 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS35-203ENST00000562420 SLC4A1APQ9BWU0 796 aaKnown RBP11.93□□□□□ -0.5
VPS35-203ENST00000562420 POTEHQ6S545 545 aa11.78□□□□□ -0.52
VPS35-203ENST00000562420 U3KPZ7 1027 aaPredicted RBP11.76□□□□□ -0.53
VPS35-203ENST00000562420 SPINK5Q9NQ38 1064 aaPredicted RBP11.68□□□□□ -0.54
VPS35-203ENST00000562420 CAPN15O75808 1086 aa11.65□□□□□ -0.54
VPS35-203ENST00000562420 SLC4A2P04920 1241 aa11.6□□□□□ -0.55
VPS35-203ENST00000562420 DSG3P32926 999 aa11.58□□□□□ -0.56
VPS35-203ENST00000562420 FOXD4L1Q9NU39 408 aa11.57□□□□□ -0.56
VPS35-203ENST00000562420 EHMT2Q96KQ7 1210 aa11.52□□□□□ -0.57
VPS35-203ENST00000562420 ZBTB22O15209 634 aa11.49□□□□□ -0.57
VPS35-203ENST00000562420 CSRNP3Q8WYN3 585 aa11.46□□□□□ -0.57
VPS35-203ENST00000562420 TRHP20396 242 aaPredicted RBP11.45□□□□□ -0.58
VPS35-203ENST00000562420 MYCNP04198 464 aaPredicted RBP11.42□□□□□ -0.58
VPS35-203ENST00000562420 ABCB7O75027 752 aa11.4□□□□□ -0.58
VPS35-203ENST00000562420 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.35□□□□□ -0.59
VPS35-203ENST00000562420 HNRNPUL2Q1KMD3 747 aaKnown RBP11.35□□□□□ -0.59
VPS35-203ENST00000562420 APLP2Q06481 763 aa11.33□□□□□ -0.6
VPS35-203ENST00000562420 ZNF219Q9P2Y4 722 aaPredicted RBP11.32□□□□□ -0.6
VPS35-203ENST00000562420 SAMD1Q6SPF0 538 aaPredicted RBP11.29□□□□□ -0.6
VPS35-203ENST00000562420 ATXN8OSP0DMR3 200 aa11.24□□□□□ -0.61
VPS35-203ENST00000562420 POLA2Q14181 598 aa11.09□□□□□ -0.63
VPS35-203ENST00000562420 RBM42Q9BTD8 480 aaKnown RBP11.01□□□□□ -0.65
VPS35-203ENST00000562420 ATF5Q9Y2D1 282 aaPredicted RBP10.99□□□□□ -0.65
VPS35-203ENST00000562420 CHRDL2Q6WN34 429 aa10.88□□□□□ -0.67
VPS35-203ENST00000562420 ZBTB12Q9Y330 459 aaPredicted RBP10.74□□□□□ -0.69
VPS35-203ENST00000562420 OSCARQ8IYS5 282 aa10.73□□□□□ -0.69
VPS35-203ENST00000562420 SP7Q8TDD2 431 aaPredicted RBP10.73□□□□□ -0.69
VPS35-203ENST00000562420 AKT1S1Q96B36 256 aa10.73□□□□□ -0.69
VPS35-203ENST00000562420 REM2Q8IYK8 340 aaPredicted RBP10.68□□□□□ -0.7
VPS35-203ENST00000562420 FBLN2P98095 1184 aa10.62□□□□□ -0.71
VPS35-203ENST00000562420 PIP4P2Q8N4L2 257 aa10.6□□□□□ -0.71
VPS35-203ENST00000562420 PITPNM1O00562 1244 aa10.58□□□□□ -0.72
VPS35-203ENST00000562420 MKRN4PQ13434 485 aaPredicted RBP10.57□□□□□ -0.72
VPS35-203ENST00000562420 HAX1O00165 279 aa10.48□□□□□ -0.73
VPS35-203ENST00000562420 FXR2P51116 673 aaKnown RBP eCLIP10.48□□□□□ -0.731e-6■■■■□ 24.7
VPS35-203ENST00000562420 SPDYE2BA6NHP3 402 aa10.43□□□□□ -0.74
VPS35-203ENST00000562420 SPDYE6P0CI01 402 aa10.43□□□□□ -0.74
VPS35-203ENST00000562420 SPDYE2Q495Y8 402 aa10.43□□□□□ -0.74
VPS35-203ENST00000562420 CLEC11AQ9Y240 323 aa10.37□□□□□ -0.75
VPS35-203ENST00000562420 EVX2Q03828 476 aa10.36□□□□□ -0.75
VPS35-203ENST00000562420 SPDYE4A6NLX3 237 aa10.35□□□□□ -0.75
VPS35-203ENST00000562420 ZNF692Q9BU19 519 aaPredicted RBP10.34□□□□□ -0.75
VPS35-203ENST00000562420 FKBP8Q14318 412 aa10.33□□□□□ -0.76
VPS35-203ENST00000562420 SSUH2Q9Y2M2 353 aa10.33□□□□□ -0.76
VPS35-203ENST00000562420 PRKAR2AP13861 404 aaKnown RBP10.31□□□□□ -0.76
VPS35-203ENST00000562420 SPDYE1Q8NFV5 336 aaPredicted RBP10.3□□□□□ -0.76
VPS35-203ENST00000562420 PROM2Q8N271 834 aa10.29□□□□□ -0.76
VPS35-203ENST00000562420 CHADLQ6NUI6 762 aa10.2□□□□□ -0.78
VPS35-203ENST00000562420 PABPN1Q86U42 306 aaKnown RBP eCLIP10.19□□□□□ -0.78
VPS35-203ENST00000562420 C19orf67A6NJJ6 358 aa10.15□□□□□ -0.78
VPS35-203ENST00000562420 PRR29P0C7W0 189 aa10.14□□□□□ -0.79
VPS35-203ENST00000562420 GABBR2O75899 941 aa10.08□□□□□ -0.8
VPS35-203ENST00000562420 STAG3Q9UJ98 1225 aa10.08□□□□□ -0.8
VPS35-203ENST00000562420 FBXO3Q9UK99 471 aa10.07□□□□□ -0.8
VPS35-203ENST00000562420 PLSCR2Q9NRY7 297 aa10.05□□□□□ -0.8
VPS35-203ENST00000562420 LHX8Q68G74 356 aa10.03□□□□□ -0.8
VPS35-203ENST00000562420 FARP1Q9Y4F1 1045 aaPredicted RBP9.98□□□□□ -0.81
VPS35-203ENST00000562420 CD44P16070 742 aaKnown RBP9.96□□□□□ -0.82
VPS35-203ENST00000562420 VASPP50552 380 aaPredicted RBP9.89□□□□□ -0.83
VPS35-203ENST00000562420 POTEIP0CG38 1075 aa9.87□□□□□ -0.83
VPS35-203ENST00000562420 CREBZFQ9NS37 354 aa9.84□□□□□ -0.83
VPS35-203ENST00000562420 ZRANB1Q9UGI0 708 aa9.81□□□□□ -0.84
VPS35-203ENST00000562420 PLEKHG5O94827 1062 aa9.8□□□□□ -0.84
VPS35-203ENST00000562420 ZBTB47Q9UFB7 747 aaPredicted RBP9.78□□□□□ -0.84
VPS35-203ENST00000562420 PLCD3Q8N3E9 789 aa9.77□□□□□ -0.85
VPS35-203ENST00000562420 DCBLD2Q96PD2 775 aa9.77□□□□□ -0.85
VPS35-203ENST00000562420 MIER1Q8N108 512 aa9.76□□□□□ -0.85
VPS35-203ENST00000562420 ZNF579Q8NAF0 562 aaKnown RBP9.75□□□□□ -0.85
VPS35-203ENST00000562420 CLCN6P51797 869 aa9.74□□□□□ -0.85
VPS35-203ENST00000562420 GALR2O43603 387 aaPredicted RBP9.71□□□□□ -0.86
VPS35-203ENST00000562420 MNX1P50219 401 aaPredicted RBP9.71□□□□□ -0.86
VPS35-203ENST00000562420 IFNLR1Q8IU57 520 aaPredicted RBP9.71□□□□□ -0.86
VPS35-203ENST00000562420 PHF12Q96QT6 1004 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 181.7 ms