RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 AEBP2Q6ZN18 517 aaPredicted RBP33.24■■■□□ 2.91
SMG1-204ENST00000561940 CHIC1Q5VXU3 224 aa32.3■■■□□ 2.76
SMG1-204ENST00000561940 PHF23Q9BUL5 403 aaPredicted RBP28.46■■■□□ 2.15
SMG1-204ENST00000561940 SENP3Q9H4L4 574 aaPredicted RBP28.12■■■□□ 2.09
SMG1-204ENST00000561940 FOXD1Q16676 465 aa26.2■■□□□ 1.78
SMG1-204ENST00000561940 PLPPR3Q6T4P5 718 aa26.17■■□□□ 1.78
SMG1-204ENST00000561940 PPP6R1Q9UPN7 881 aa25.19■■□□□ 1.62
SMG1-204ENST00000561940 ADRA2BP18089 450 aa25.18■■□□□ 1.62
SMG1-204ENST00000561940 PIAS4Q8N2W9 510 aaPredicted RBP24.69■■□□□ 1.54
SMG1-204ENST00000561940 MSH5O43196 834 aa24.1■■□□□ 1.45
SMG1-204ENST00000561940 POTEDQ86YR6 584 aa23.62■■□□□ 1.37
SMG1-204ENST00000561940 PPP4R3CPQ6ZMV5 832 aa23.11■■□□□ 1.29
SMG1-204ENST00000561940 MAPK8IP2Q13387 824 aaPredicted RBP22.91■■□□□ 1.26
SMG1-204ENST00000561940 SCAF1Q9H7N4 1312 aaKnown RBP22.9■■□□□ 1.26
SMG1-204ENST00000561940 KCNA4P22459 653 aa22.51■■□□□ 1.19
SMG1-204ENST00000561940 DMRT2Q9Y5R5 561 aa22.44■■□□□ 1.18
SMG1-204ENST00000561940 CNKSR2Q8WXI2 1034 aa22.43■■□□□ 1.18
SMG1-204ENST00000561940 NCBP3Q53F19 620 aaKnown RBP22.41■■□□□ 1.18
SMG1-204ENST00000561940 NPM3O75607 178 aaKnown RBP22.15■■□□□ 1.14
SMG1-204ENST00000561940 RNF216Q9NWF9 866 aaPredicted RBP21.99■■□□□ 1.11
SMG1-204ENST00000561940 HOXD11P31277 338 aaPredicted RBP21.92■■□□□ 1.1
SMG1-204ENST00000561940 DCAF8L1A6NGE4 600 aa21.65■■□□□ 1.06
SMG1-204ENST00000561940 SLC4A1APQ9BWU0 796 aaKnown RBP21.39■■□□□ 1.01
SMG1-204ENST00000561940 DNAJC5BQ9UF47 199 aa21.29■■□□□ 1
SMG1-204ENST00000561940 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21■□□□□ 0.95
SMG1-204ENST00000561940 SLC4A2P04920 1241 aa20.94■□□□□ 0.94
SMG1-204ENST00000561940 EHMT2Q96KQ7 1210 aa20.78■□□□□ 0.92
SMG1-204ENST00000561940 ZBTB22O15209 634 aa20.7■□□□□ 0.9
SMG1-204ENST00000561940 RNF39Q9H2S5 420 aa20.67■□□□□ 0.9
SMG1-204ENST00000561940 FOXD4L1Q9NU39 408 aa20.66■□□□□ 0.9
SMG1-204ENST00000561940 U3KPZ7 1027 aaPredicted RBP20.61■□□□□ 0.89
SMG1-204ENST00000561940 CSRNP3Q8WYN3 585 aa20.5■□□□□ 0.87
SMG1-204ENST00000561940 MYCNP04198 464 aaPredicted RBP20.41■□□□□ 0.86
SMG1-204ENST00000561940 C1QBPQ07021 282 aaKnown RBP20.38■□□□□ 0.85
SMG1-204ENST00000561940 CACNB1Q02641 598 aaPredicted RBP20.29■□□□□ 0.84
SMG1-204ENST00000561940 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.22■□□□□ 0.83
SMG1-204ENST00000561940 HNRNPUL2Q1KMD3 747 aaKnown RBP20.22■□□□□ 0.83
SMG1-204ENST00000561940 SAMD1Q6SPF0 538 aaPredicted RBP20.17■□□□□ 0.82
SMG1-204ENST00000561940 SPINK5Q9NQ38 1064 aaPredicted RBP20.13■□□□□ 0.81
SMG1-204ENST00000561940 CAPN15O75808 1086 aa20.05■□□□□ 0.8
SMG1-204ENST00000561940 APLP2Q06481 763 aa20.01■□□□□ 0.79
SMG1-204ENST00000561940 ATF5Q9Y2D1 282 aaPredicted RBP20■□□□□ 0.79
SMG1-204ENST00000561940 TRHP20396 242 aaPredicted RBP19.96■□□□□ 0.79
SMG1-204ENST00000561940 ATXN8OSP0DMR3 200 aa19.87■□□□□ 0.77
SMG1-204ENST00000561940 ZNF219Q9P2Y4 722 aaPredicted RBP19.8■□□□□ 0.76
SMG1-204ENST00000561940 ABCB7O75027 752 aa19.71■□□□□ 0.75
SMG1-204ENST00000561940 DSG3P32926 999 aa19.67■□□□□ 0.74
SMG1-204ENST00000561940 POLA2Q14181 598 aa19.58■□□□□ 0.72
SMG1-204ENST00000561940 ZBTB12Q9Y330 459 aaPredicted RBP19.1■□□□□ 0.65
SMG1-204ENST00000561940 FBLN2P98095 1184 aa19.07■□□□□ 0.64
SMG1-204ENST00000561940 MKRN4PQ13434 485 aaPredicted RBP19.07■□□□□ 0.64
SMG1-204ENST00000561940 OSCARQ8IYS5 282 aa18.91■□□□□ 0.62
SMG1-204ENST00000561940 RBM42Q9BTD8 480 aaKnown RBP18.67■□□□□ 0.58
SMG1-204ENST00000561940 SPDYE2BA6NHP3 402 aa18.62■□□□□ 0.57
SMG1-204ENST00000561940 SPDYE6P0CI01 402 aa18.62■□□□□ 0.57
SMG1-204ENST00000561940 SPDYE2Q495Y8 402 aa18.62■□□□□ 0.57
SMG1-204ENST00000561940 ZNF692Q9BU19 519 aaPredicted RBP18.62■□□□□ 0.57
SMG1-204ENST00000561940 SPDYE4A6NLX3 237 aa18.6■□□□□ 0.57
SMG1-204ENST00000561940 FKBP8Q14318 412 aa18.57■□□□□ 0.56
SMG1-204ENST00000561940 SSUH2Q9Y2M2 353 aa18.46■□□□□ 0.55
SMG1-204ENST00000561940 AKT1S1Q96B36 256 aa18.45■□□□□ 0.54
SMG1-204ENST00000561940 PABPN1Q86U42 306 aaKnown RBP eCLIP18.38■□□□□ 0.53
SMG1-204ENST00000561940 REM2Q8IYK8 340 aaPredicted RBP18.34■□□□□ 0.53
SMG1-204ENST00000561940 POTEHQ6S545 545 aa18.32■□□□□ 0.52
SMG1-204ENST00000561940 CLEC11AQ9Y240 323 aa18.17■□□□□ 0.5
SMG1-204ENST00000561940 PROM2Q8N271 834 aa18.15■□□□□ 0.5
SMG1-204ENST00000561940 PITPNM1O00562 1244 aa18.13■□□□□ 0.49
SMG1-204ENST00000561940 SPDYE1Q8NFV5 336 aaPredicted RBP18.12■□□□□ 0.49
SMG1-204ENST00000561940 CHRDL2Q6WN34 429 aa18.01■□□□□ 0.47
SMG1-204ENST00000561940 STAG3Q9UJ98 1225 aa17.95■□□□□ 0.46
SMG1-204ENST00000561940 PRR29P0C7W0 189 aa17.93■□□□□ 0.46
SMG1-204ENST00000561940 FBXO3Q9UK99 471 aa17.82■□□□□ 0.44
SMG1-204ENST00000561940 PIP4P2Q8N4L2 257 aa17.78■□□□□ 0.44
SMG1-204ENST00000561940 FXR2P51116 673 aaKnown RBP eCLIP17.76■□□□□ 0.435e-9■■■■□ 26.2
SMG1-204ENST00000561940 CHADLQ6NUI6 762 aa17.74■□□□□ 0.43
SMG1-204ENST00000561940 PRKAR2AP13861 404 aaKnown RBP17.7■□□□□ 0.42
SMG1-204ENST00000561940 MIER1Q8N108 512 aa17.7■□□□□ 0.42
SMG1-204ENST00000561940 CREBZFQ9NS37 354 aa17.66■□□□□ 0.42
SMG1-204ENST00000561940 PLCD3Q8N3E9 789 aa17.64■□□□□ 0.41
SMG1-204ENST00000561940 VASPP50552 380 aaPredicted RBP17.63■□□□□ 0.41
SMG1-204ENST00000561940 PLEKHG5O94827 1062 aa17.52■□□□□ 0.4
SMG1-204ENST00000561940 FARP1Q9Y4F1 1045 aaPredicted RBP17.47■□□□□ 0.39
SMG1-204ENST00000561940 KLHL34Q8N239 644 aa17.45■□□□□ 0.38
SMG1-204ENST00000561940 MNX1P50219 401 aaPredicted RBP17.43■□□□□ 0.38
SMG1-204ENST00000561940 IFNLR1Q8IU57 520 aaPredicted RBP17.42■□□□□ 0.38
SMG1-204ENST00000561940 NPM1P06748 294 aaKnown RBP eCLIP17.32■□□□□ 0.36
SMG1-204ENST00000561940 ZBTB47Q9UFB7 747 aaPredicted RBP17.32■□□□□ 0.36
SMG1-204ENST00000561940 HAX1O00165 279 aa17.29■□□□□ 0.36
SMG1-204ENST00000561940 SPOCK2Q92563 424 aa17.2■□□□□ 0.34
SMG1-204ENST00000561940 NUBP1P53384 320 aa17.19■□□□□ 0.34
SMG1-204ENST00000561940 CD44P16070 742 aaKnown RBP17.17■□□□□ 0.34
SMG1-204ENST00000561940 RASEFQ8IZ41 740 aa17.17■□□□□ 0.34
SMG1-204ENST00000561940 C19orf67A6NJJ6 358 aa17.16■□□□□ 0.34
SMG1-204ENST00000561940 TSPYL2Q9H2G4 693 aaPredicted RBP17.16■□□□□ 0.34
SMG1-204ENST00000561940 EVX2Q03828 476 aa17.15■□□□□ 0.34
SMG1-204ENST00000561940 DCAF8Q5TAQ9 597 aa17.09■□□□□ 0.33
SMG1-204ENST00000561940 ZRANB1Q9UGI0 708 aa17.09■□□□□ 0.33
SMG1-204ENST00000561940 PAK3O75914 559 aaPredicted RBP17.07■□□□□ 0.32
SMG1-204ENST00000561940 CIZ1Q9ULV3 898 aaPredicted RBP17.04■□□□□ 0.32
SMG1-204ENST00000561940 FAM212AQ96EL1 285 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms