RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 AEBP2Q6ZN18 517 aaPredicted RBP19.77■□□□□ 0.76
HERC1-215ENST00000561436 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
HERC1-215ENST00000561436 PHF23Q9BUL5 403 aaPredicted RBP16.86■□□□□ 0.29
HERC1-215ENST00000561436 SENP3Q9H4L4 574 aaPredicted RBP16.62■□□□□ 0.25
HERC1-215ENST00000561436 FOXD1Q16676 465 aa15.56■□□□□ 0.08
HERC1-215ENST00000561436 PLPPR3Q6T4P5 718 aa15.39■□□□□ 0.05
HERC1-215ENST00000561436 PPP6R1Q9UPN7 881 aa14.95□□□□□ -0.02
HERC1-215ENST00000561436 ADRA2BP18089 450 aa14.93□□□□□ -0.02
HERC1-215ENST00000561436 PIAS4Q8N2W9 510 aaPredicted RBP14.64□□□□□ -0.07
HERC1-215ENST00000561436 MSH5O43196 834 aa14.24□□□□□ -0.13
HERC1-215ENST00000561436 PPP4R3CPQ6ZMV5 832 aa13.62□□□□□ -0.23
HERC1-215ENST00000561436 MAPK8IP2Q13387 824 aaPredicted RBP13.61□□□□□ -0.23
HERC1-215ENST00000561436 SCAF1Q9H7N4 1312 aaKnown RBP13.42□□□□□ -0.26
HERC1-215ENST00000561436 POTEDQ86YR6 584 aa13.31□□□□□ -0.28
HERC1-215ENST00000561436 DMRT2Q9Y5R5 561 aa13.28□□□□□ -0.28
HERC1-215ENST00000561436 KCNA4P22459 653 aa13.26□□□□□ -0.29
HERC1-215ENST00000561436 CNKSR2Q8WXI2 1034 aa13.18□□□□□ -0.3
HERC1-215ENST00000561436 NCBP3Q53F19 620 aaKnown RBP13.11□□□□□ -0.31
HERC1-215ENST00000561436 NPM3O75607 178 aaKnown RBP13.05□□□□□ -0.32
HERC1-215ENST00000561436 HOXD11P31277 338 aaPredicted RBP12.94□□□□□ -0.34
HERC1-215ENST00000561436 RNF216Q9NWF9 866 aaPredicted RBP12.94□□□□□ -0.34
HERC1-215ENST00000561436 DCAF8L1A6NGE4 600 aa12.84□□□□□ -0.35
HERC1-215ENST00000561436 SLC4A1APQ9BWU0 796 aaKnown RBP12.54□□□□□ -0.4
HERC1-215ENST00000561436 DNAJC5BQ9UF47 199 aa12.46□□□□□ -0.41
HERC1-215ENST00000561436 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.39□□□□□ -0.43
HERC1-215ENST00000561436 SLC4A2P04920 1241 aa12.38□□□□□ -0.43
HERC1-215ENST00000561436 RNF39Q9H2S5 420 aa12.27□□□□□ -0.45
HERC1-215ENST00000561436 ZBTB22O15209 634 aa12.24□□□□□ -0.45
HERC1-215ENST00000561436 U3KPZ7 1027 aaPredicted RBP12.21□□□□□ -0.45
HERC1-215ENST00000561436 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
HERC1-215ENST00000561436 FOXD4L1Q9NU39 408 aa12.12□□□□□ -0.47
HERC1-215ENST00000561436 CACNB1Q02641 598 aaPredicted RBP12.07□□□□□ -0.48
HERC1-215ENST00000561436 C1QBPQ07021 282 aaKnown RBP12.03□□□□□ -0.48
HERC1-215ENST00000561436 CSRNP3Q8WYN3 585 aa12.01□□□□□ -0.49
HERC1-215ENST00000561436 MYCNP04198 464 aaPredicted RBP11.99□□□□□ -0.49
HERC1-215ENST00000561436 SPINK5Q9NQ38 1064 aaPredicted RBP11.96□□□□□ -0.49
HERC1-215ENST00000561436 CAPN15O75808 1086 aa11.86□□□□□ -0.51
HERC1-215ENST00000561436 ATF5Q9Y2D1 282 aaPredicted RBP11.85□□□□□ -0.51
HERC1-215ENST00000561436 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.83□□□□□ -0.52
HERC1-215ENST00000561436 HNRNPUL2Q1KMD3 747 aaKnown RBP11.83□□□□□ -0.52
HERC1-215ENST00000561436 SAMD1Q6SPF0 538 aaPredicted RBP11.83□□□□□ -0.52
HERC1-215ENST00000561436 TRHP20396 242 aaPredicted RBP11.81□□□□□ -0.52
HERC1-215ENST00000561436 ABCB7O75027 752 aa11.71□□□□□ -0.53
HERC1-215ENST00000561436 APLP2Q06481 763 aa11.69□□□□□ -0.54
HERC1-215ENST00000561436 DSG3P32926 999 aa11.66□□□□□ -0.54
HERC1-215ENST00000561436 ZNF219Q9P2Y4 722 aaPredicted RBP11.65□□□□□ -0.54
HERC1-215ENST00000561436 ATXN8OSP0DMR3 200 aa11.59□□□□□ -0.55
HERC1-215ENST00000561436 POLA2Q14181 598 aa11.55□□□□□ -0.56
HERC1-215ENST00000561436 MKRN4PQ13434 485 aaPredicted RBP11.28□□□□□ -0.6
HERC1-215ENST00000561436 OSCARQ8IYS5 282 aa11.22□□□□□ -0.61
HERC1-215ENST00000561436 ZBTB12Q9Y330 459 aaPredicted RBP11.19□□□□□ -0.62
HERC1-215ENST00000561436 FBLN2P98095 1184 aa11.18□□□□□ -0.62
HERC1-215ENST00000561436 RBM42Q9BTD8 480 aaKnown RBP10.99□□□□□ -0.65
HERC1-215ENST00000561436 ZNF692Q9BU19 519 aaPredicted RBP10.95□□□□□ -0.66
HERC1-215ENST00000561436 SPDYE2BA6NHP3 402 aa10.94□□□□□ -0.66
HERC1-215ENST00000561436 SPDYE6P0CI01 402 aa10.94□□□□□ -0.66
HERC1-215ENST00000561436 SPDYE2Q495Y8 402 aa10.94□□□□□ -0.66
HERC1-215ENST00000561436 SPDYE4A6NLX3 237 aa10.91□□□□□ -0.66
HERC1-215ENST00000561436 FKBP8Q14318 412 aa10.88□□□□□ -0.67
HERC1-215ENST00000561436 SSUH2Q9Y2M2 353 aa10.88□□□□□ -0.67
HERC1-215ENST00000561436 AKT1S1Q96B36 256 aa10.87□□□□□ -0.67
HERC1-215ENST00000561436 REM2Q8IYK8 340 aaPredicted RBP10.85□□□□□ -0.67
HERC1-215ENST00000561436 PABPN1Q86U42 306 aaKnown RBP eCLIP10.83□□□□□ -0.68
HERC1-215ENST00000561436 PITPNM1O00562 1244 aa10.76□□□□□ -0.69
HERC1-215ENST00000561436 CLEC11AQ9Y240 323 aa10.73□□□□□ -0.69
HERC1-215ENST00000561436 CHRDL2Q6WN34 429 aa10.69□□□□□ -0.7
HERC1-215ENST00000561436 PROM2Q8N271 834 aa10.65□□□□□ -0.7
HERC1-215ENST00000561436 SPDYE1Q8NFV5 336 aaPredicted RBP10.65□□□□□ -0.7
HERC1-215ENST00000561436 PIP4P2Q8N4L2 257 aa10.56□□□□□ -0.72
HERC1-215ENST00000561436 PRR29P0C7W0 189 aa10.54□□□□□ -0.72
HERC1-215ENST00000561436 CHADLQ6NUI6 762 aa10.54□□□□□ -0.72
HERC1-215ENST00000561436 FXR2P51116 673 aaKnown RBP eCLIP10.51□□□□□ -0.73
HERC1-215ENST00000561436 PRKAR2AP13861 404 aaKnown RBP10.48□□□□□ -0.73
HERC1-215ENST00000561436 POTEHQ6S545 545 aa10.48□□□□□ -0.73
HERC1-215ENST00000561436 STAG3Q9UJ98 1225 aa10.48□□□□□ -0.73
HERC1-215ENST00000561436 CREBZFQ9NS37 354 aa10.43□□□□□ -0.74
HERC1-215ENST00000561436 MIER1Q8N108 512 aa10.37□□□□□ -0.75
HERC1-215ENST00000561436 PLCD3Q8N3E9 789 aa10.34□□□□□ -0.75
HERC1-215ENST00000561436 FBXO3Q9UK99 471 aa10.34□□□□□ -0.75
HERC1-215ENST00000561436 VASPP50552 380 aaPredicted RBP10.33□□□□□ -0.76
HERC1-215ENST00000561436 FARP1Q9Y4F1 1045 aaPredicted RBP10.31□□□□□ -0.76
HERC1-215ENST00000561436 MNX1P50219 401 aaPredicted RBP10.3□□□□□ -0.76
HERC1-215ENST00000561436 HAX1O00165 279 aa10.25□□□□□ -0.77
HERC1-215ENST00000561436 EVX2Q03828 476 aa10.25□□□□□ -0.77
HERC1-215ENST00000561436 IFNLR1Q8IU57 520 aaPredicted RBP10.22□□□□□ -0.77
HERC1-215ENST00000561436 PLEKHG5O94827 1062 aa10.19□□□□□ -0.78
HERC1-215ENST00000561436 KLHL34Q8N239 644 aa10.19□□□□□ -0.78
HERC1-215ENST00000561436 C19orf67A6NJJ6 358 aa10.16□□□□□ -0.78
HERC1-215ENST00000561436 CD44P16070 742 aaKnown RBP10.16□□□□□ -0.78
HERC1-215ENST00000561436 RASEFQ8IZ41 740 aa10.15□□□□□ -0.78
HERC1-215ENST00000561436 NPM1P06748 294 aaKnown RBP eCLIP10.14□□□□□ -0.79
HERC1-215ENST00000561436 TSPYL2Q9H2G4 693 aaPredicted RBP10.13□□□□□ -0.79
HERC1-215ENST00000561436 NUBP1P53384 320 aa10.11□□□□□ -0.79
HERC1-215ENST00000561436 ZRANB1Q9UGI0 708 aa10.09□□□□□ -0.79
HERC1-215ENST00000561436 ZBTB47Q9UFB7 747 aaPredicted RBP10.07□□□□□ -0.8
HERC1-215ENST00000561436 PHF12Q96QT6 1004 aa10.06□□□□□ -0.8
HERC1-215ENST00000561436 SPOCK2Q92563 424 aa10.04□□□□□ -0.8
HERC1-215ENST00000561436 SP7Q8TDD2 431 aaPredicted RBP10.02□□□□□ -0.81
HERC1-215ENST00000561436 PAK3O75914 559 aaPredicted RBP10.01□□□□□ -0.81
HERC1-215ENST00000561436 DCAF8Q5TAQ9 597 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 210.7 ms