RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 AEBP2Q6ZN18 517 aaPredicted RBP17.16■□□□□ 0.34
SPG11-225ENST00000561391 CHIC1Q5VXU3 224 aa16.1■□□□□ 0.17
SPG11-225ENST00000561391 SENP3Q9H4L4 574 aaPredicted RBP14.83□□□□□ -0.04
SPG11-225ENST00000561391 PHF23Q9BUL5 403 aaPredicted RBP14.5□□□□□ -0.09
SPG11-225ENST00000561391 POTEDQ86YR6 584 aa14.38□□□□□ -0.11
SPG11-225ENST00000561391 FOXD1Q16676 465 aa13.88□□□□□ -0.19
SPG11-225ENST00000561391 MSH5O43196 834 aa13.35□□□□□ -0.27
SPG11-225ENST00000561391 PIAS4Q8N2W9 510 aaPredicted RBP12.84□□□□□ -0.35
SPG11-225ENST00000561391 PLPPR3Q6T4P5 718 aa12.67□□□□□ -0.38
SPG11-225ENST00000561391 ADRA2BP18089 450 aa12.49□□□□□ -0.41
SPG11-225ENST00000561391 PPP6R1Q9UPN7 881 aa12.49□□□□□ -0.41
SPG11-225ENST00000561391 CACNB1Q02641 598 aaPredicted RBP11.98□□□□□ -0.49
SPG11-225ENST00000561391 DMRT2Q9Y5R5 561 aa11.6□□□□□ -0.55
SPG11-225ENST00000561391 MAPK8IP2Q13387 824 aaPredicted RBP11.52□□□□□ -0.57
SPG11-225ENST00000561391 SCAF1Q9H7N4 1312 aaKnown RBP11.48□□□□□ -0.57
SPG11-225ENST00000561391 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
SPG11-225ENST00000561391 RNF39Q9H2S5 420 aa11.28□□□□□ -0.6
SPG11-225ENST00000561391 POTEHQ6S545 545 aa11.14□□□□□ -0.63
SPG11-225ENST00000561391 C1QBPQ07021 282 aaKnown RBP11.08□□□□□ -0.64
SPG11-225ENST00000561391 PPP4R3CPQ6ZMV5 832 aa11.05□□□□□ -0.64
SPG11-225ENST00000561391 HOXD11P31277 338 aaPredicted RBP10.96□□□□□ -0.65
SPG11-225ENST00000561391 CNKSR2Q8WXI2 1034 aa10.91□□□□□ -0.66
SPG11-225ENST00000561391 RNF216Q9NWF9 866 aaPredicted RBP10.85□□□□□ -0.67
SPG11-225ENST00000561391 DNAJC5BQ9UF47 199 aa10.61□□□□□ -0.71
SPG11-225ENST00000561391 NCBP3Q53F19 620 aaKnown RBP10.6□□□□□ -0.71
SPG11-225ENST00000561391 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.55□□□□□ -0.72
SPG11-225ENST00000561391 NPM3O75607 178 aaKnown RBP10.4□□□□□ -0.74
SPG11-225ENST00000561391 DSG3P32926 999 aa10.3□□□□□ -0.76
SPG11-225ENST00000561391 CAPN15O75808 1086 aa10.24□□□□□ -0.77
SPG11-225ENST00000561391 U3KPZ7 1027 aaPredicted RBP10.23□□□□□ -0.77
SPG11-225ENST00000561391 SPINK5Q9NQ38 1064 aaPredicted RBP10.17□□□□□ -0.78
SPG11-225ENST00000561391 SP7Q8TDD2 431 aaPredicted RBP10.06□□□□□ -0.8
SPG11-225ENST00000561391 APLP2Q06481 763 aa10.02□□□□□ -0.81
SPG11-225ENST00000561391 TRHP20396 242 aaPredicted RBP10□□□□□ -0.81
SPG11-225ENST00000561391 KCNA4P22459 653 aa9.99□□□□□ -0.81
SPG11-225ENST00000561391 CHRDL2Q6WN34 429 aa9.98□□□□□ -0.81
SPG11-225ENST00000561391 ZNF219Q9P2Y4 722 aaPredicted RBP9.97□□□□□ -0.81
SPG11-225ENST00000561391 ABCB7O75027 752 aa9.96□□□□□ -0.82
SPG11-225ENST00000561391 SLC4A2P04920 1241 aa9.95□□□□□ -0.82
SPG11-225ENST00000561391 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.93□□□□□ -0.82
SPG11-225ENST00000561391 HNRNPUL2Q1KMD3 747 aaKnown RBP9.93□□□□□ -0.82
SPG11-225ENST00000561391 RBM42Q9BTD8 480 aaKnown RBP9.89□□□□□ -0.83
SPG11-225ENST00000561391 SAMD1Q6SPF0 538 aaPredicted RBP9.85□□□□□ -0.83
SPG11-225ENST00000561391 HAX1O00165 279 aa9.66□□□□□ -0.86
SPG11-225ENST00000561391 MYCNP04198 464 aaPredicted RBP9.66□□□□□ -0.86
SPG11-225ENST00000561391 POLA2Q14181 598 aa9.64□□□□□ -0.87
SPG11-225ENST00000561391 PLSCR2Q9NRY7 297 aa9.59□□□□□ -0.87
SPG11-225ENST00000561391 PIP4P2Q8N4L2 257 aa9.56□□□□□ -0.88
SPG11-225ENST00000561391 ZBTB12Q9Y330 459 aaPredicted RBP9.47□□□□□ -0.89
SPG11-225ENST00000561391 AKT1S1Q96B36 256 aa9.46□□□□□ -0.9
SPG11-225ENST00000561391 LHX8Q68G74 356 aa9.43□□□□□ -0.9
SPG11-225ENST00000561391 FOXD4L1Q9NU39 408 aa9.43□□□□□ -0.9
SPG11-225ENST00000561391 SLC4A1APQ9BWU0 796 aaKnown RBP9.42□□□□□ -0.9
SPG11-225ENST00000561391 EVX2Q03828 476 aa9.39□□□□□ -0.91
SPG11-225ENST00000561391 REM2Q8IYK8 340 aaPredicted RBP9.38□□□□□ -0.91
SPG11-225ENST00000561391 ATF5Q9Y2D1 282 aaPredicted RBP9.38□□□□□ -0.91
SPG11-225ENST00000561391 OSCARQ8IYS5 282 aa9.37□□□□□ -0.91
SPG11-225ENST00000561391 FXR2P51116 673 aaKnown RBP eCLIP9.34□□□□□ -0.91
SPG11-225ENST00000561391 PITPNM1O00562 1244 aa9.29□□□□□ -0.92
SPG11-225ENST00000561391 GABBR2O75899 941 aa9.16□□□□□ -0.94
SPG11-225ENST00000561391 FBLN2P98095 1184 aa9.15□□□□□ -0.94
SPG11-225ENST00000561391 ZBTB22O15209 634 aa9.14□□□□□ -0.95
SPG11-225ENST00000561391 SPDYE2BA6NHP3 402 aa9.12□□□□□ -0.95
SPG11-225ENST00000561391 SPDYE6P0CI01 402 aa9.12□□□□□ -0.95
SPG11-225ENST00000561391 ATXN8OSP0DMR3 200 aa9.12□□□□□ -0.95
SPG11-225ENST00000561391 SPDYE2Q495Y8 402 aa9.12□□□□□ -0.95
SPG11-225ENST00000561391 C19orf67A6NJJ6 358 aa9.08□□□□□ -0.96
SPG11-225ENST00000561391 CLEC11AQ9Y240 323 aa9.08□□□□□ -0.96
SPG11-225ENST00000561391 PRKAR2AP13861 404 aaKnown RBP9.07□□□□□ -0.96
SPG11-225ENST00000561391 SPDYE1Q8NFV5 336 aaPredicted RBP9.04□□□□□ -0.96
SPG11-225ENST00000561391 ZNF692Q9BU19 519 aaPredicted RBP9□□□□□ -0.97
SPG11-225ENST00000561391 POTEMA6NI47 508 aa8.94□□□□□ -0.98
SPG11-225ENST00000561391 MKRN4PQ13434 485 aaPredicted RBP8.94□□□□□ -0.98
SPG11-225ENST00000561391 SSUH2Q9Y2M2 353 aa8.93□□□□□ -0.98
SPG11-225ENST00000561391 POTEIP0CG38 1075 aa8.92□□□□□ -0.98
SPG11-225ENST00000561391 CHADLQ6NUI6 762 aa8.88□□□□□ -0.99
SPG11-225ENST00000561391 POTEGQ6S5H5 508 aa8.88□□□□□ -0.99
SPG11-225ENST00000561391 PRR29P0C7W0 189 aa8.86□□□□□ -0.99
SPG11-225ENST00000561391 PABPN1Q86U42 306 aaKnown RBP eCLIP8.85□□□□□ -0.99
SPG11-225ENST00000561391 DCBLD2Q96PD2 775 aa8.81□□□□□ -1
SPG11-225ENST00000561391 PCDH10Q9P2E7 1040 aa8.81□□□□□ -1
SPG11-225ENST00000561391 OTUD5Q96G74 571 aa8.77□□□□□ -1.01
SPG11-225ENST00000561391 EHMT2Q96KQ7 1210 aa8.77□□□□□ -1.01
SPG11-225ENST00000561391 CD44P16070 742 aaKnown RBP8.75□□□□□ -1.01
SPG11-225ENST00000561391 CLCN6P51797 869 aa8.74□□□□□ -1.01
SPG11-225ENST00000561391 FARP1Q9Y4F1 1045 aaPredicted RBP8.71□□□□□ -1.02
SPG11-225ENST00000561391 POTEB2H3BUK9 544 aa8.62□□□□□ -1.03
SPG11-225ENST00000561391 ZRANB1Q9UGI0 708 aa8.59□□□□□ -1.03
SPG11-225ENST00000561391 ZNF579Q8NAF0 562 aaKnown RBP8.57□□□□□ -1.04
SPG11-225ENST00000561391 STAG3Q9UJ98 1225 aa8.57□□□□□ -1.04
SPG11-225ENST00000561391 CSRNP3Q8WYN3 585 aa8.54□□□□□ -1.04
SPG11-225ENST00000561391 PAK3O75914 559 aaPredicted RBP8.53□□□□□ -1.04
SPG11-225ENST00000561391 CREBZFQ9NS37 354 aa8.52□□□□□ -1.05
SPG11-225ENST00000561391 FAM163AQ96GL9 167 aaPredicted RBP8.5□□□□□ -1.05
SPG11-225ENST00000561391 GALR2O43603 387 aaPredicted RBP8.49□□□□□ -1.05
SPG11-225ENST00000561391 SPDYE4A6NLX3 237 aa8.47□□□□□ -1.05
SPG11-225ENST00000561391 LCE2DQ5TA82 110 aaPredicted RBP8.46□□□□□ -1.06
SPG11-225ENST00000561391 NPM1P06748 294 aaKnown RBP eCLIP8.44□□□□□ -1.06
SPG11-225ENST00000561391 PHF12Q96QT6 1004 aa8.43□□□□□ -1.06
SPG11-225ENST00000561391 MAMSTRQ6ZN01 415 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms