RNA–Protein interactions for RNA: ENST00000561330.1

USP8-218, Transcript of ubiquitin specific peptidase 8, humanhuman

TSL 1 (best)

Gene USP8, Length 815 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP8-218ENST00000561330 AEBP2Q6ZN18 517 aaPredicted RBP25.51■■□□□ 1.67
USP8-218ENST00000561330 CHIC1Q5VXU3 224 aa24.99■■□□□ 1.59
USP8-218ENST00000561330 PHF23Q9BUL5 403 aaPredicted RBP21.96■■□□□ 1.11
USP8-218ENST00000561330 SENP3Q9H4L4 574 aaPredicted RBP21.69■■□□□ 1.06
USP8-218ENST00000561330 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
USP8-218ENST00000561330 FOXD1Q16676 465 aa20.1■□□□□ 0.81
USP8-218ENST00000561330 ADRA2BP18089 450 aa19.37■□□□□ 0.69
USP8-218ENST00000561330 PPP6R1Q9UPN7 881 aa19.37■□□□□ 0.69
USP8-218ENST00000561330 PIAS4Q8N2W9 510 aaPredicted RBP18.99■□□□□ 0.63
USP8-218ENST00000561330 MSH5O43196 834 aa18.55■□□□□ 0.56
USP8-218ENST00000561330 PPP4R3CPQ6ZMV5 832 aa17.92■□□□□ 0.46
USP8-218ENST00000561330 SCAF1Q9H7N4 1312 aaKnown RBP17.77■□□□□ 0.44
USP8-218ENST00000561330 POTEDQ86YR6 584 aa17.75■□□□□ 0.43
USP8-218ENST00000561330 MAPK8IP2Q13387 824 aaPredicted RBP17.56■□□□□ 0.4
USP8-218ENST00000561330 KCNA4P22459 653 aa17.55■□□□□ 0.4
USP8-218ENST00000561330 NCBP3Q53F19 620 aaKnown RBP17.5■□□□□ 0.39
USP8-218ENST00000561330 CNKSR2Q8WXI2 1034 aa17.41■□□□□ 0.38
USP8-218ENST00000561330 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
USP8-218ENST00000561330 NPM3O75607 178 aaKnown RBP17.2■□□□□ 0.34
USP8-218ENST00000561330 RNF216Q9NWF9 866 aaPredicted RBP17.06■□□□□ 0.32
USP8-218ENST00000561330 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.31
USP8-218ENST00000561330 SLC4A1APQ9BWU0 796 aaKnown RBP16.74■□□□□ 0.27
USP8-218ENST00000561330 DNAJC5BQ9UF47 199 aa16.68■□□□□ 0.26
USP8-218ENST00000561330 DCAF8L1A6NGE4 600 aa16.59■□□□□ 0.25
USP8-218ENST00000561330 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.2
USP8-218ENST00000561330 SLC4A2P04920 1241 aa16.22■□□□□ 0.19
USP8-218ENST00000561330 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.21■□□□□ 0.191e-6■■□□□ 12.2
USP8-218ENST00000561330 FOXD4L1Q9NU39 408 aa16.15■□□□□ 0.18
USP8-218ENST00000561330 ZBTB22O15209 634 aa16.13■□□□□ 0.17
USP8-218ENST00000561330 CSRNP3Q8WYN3 585 aa16.1■□□□□ 0.17
USP8-218ENST00000561330 MYCNP04198 464 aaPredicted RBP15.91■□□□□ 0.14
USP8-218ENST00000561330 U3KPZ7 1027 aaPredicted RBP15.91■□□□□ 0.14
USP8-218ENST00000561330 RNF39Q9H2S5 420 aa15.87■□□□□ 0.13
USP8-218ENST00000561330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.78■□□□□ 0.12
USP8-218ENST00000561330 HNRNPUL2Q1KMD3 747 aaKnown RBP15.78■□□□□ 0.12
USP8-218ENST00000561330 SAMD1Q6SPF0 538 aaPredicted RBP15.72■□□□□ 0.11
USP8-218ENST00000561330 C1QBPQ07021 282 aaKnown RBP15.71■□□□□ 0.11
USP8-218ENST00000561330 APLP2Q06481 763 aa15.61■□□□□ 0.09
USP8-218ENST00000561330 ATXN8OSP0DMR3 200 aa15.59■□□□□ 0.09
USP8-218ENST00000561330 CACNB1Q02641 598 aaPredicted RBP15.59■□□□□ 0.09
USP8-218ENST00000561330 SPINK5Q9NQ38 1064 aaPredicted RBP15.45■□□□□ 0.06
USP8-218ENST00000561330 ATF5Q9Y2D1 282 aaPredicted RBP15.44■□□□□ 0.06
USP8-218ENST00000561330 CAPN15O75808 1086 aa15.42■□□□□ 0.06
USP8-218ENST00000561330 TRHP20396 242 aaPredicted RBP15.36■□□□□ 0.05
USP8-218ENST00000561330 ZNF219Q9P2Y4 722 aaPredicted RBP15.36■□□□□ 0.05
USP8-218ENST00000561330 DSG3P32926 999 aa15.12■□□□□ 0.01
USP8-218ENST00000561330 ABCB7O75027 752 aa15.11■□□□□ 0.01
USP8-218ENST00000561330 POLA2Q14181 598 aa15.11■□□□□ 0.01
USP8-218ENST00000561330 ZBTB12Q9Y330 459 aaPredicted RBP14.89□□□□□ -0.03
USP8-218ENST00000561330 FBLN2P98095 1184 aa14.86□□□□□ -0.03
USP8-218ENST00000561330 MKRN4PQ13434 485 aaPredicted RBP14.79□□□□□ -0.04
USP8-218ENST00000561330 OSCARQ8IYS5 282 aa14.58□□□□□ -0.08
USP8-218ENST00000561330 FKBP8Q14318 412 aa14.57□□□□□ -0.08
USP8-218ENST00000561330 SPDYE4A6NLX3 237 aa14.51□□□□□ -0.09
USP8-218ENST00000561330 SPDYE2BA6NHP3 402 aa14.48□□□□□ -0.09
USP8-218ENST00000561330 SPDYE6P0CI01 402 aa14.48□□□□□ -0.09
USP8-218ENST00000561330 SPDYE2Q495Y8 402 aa14.48□□□□□ -0.09
USP8-218ENST00000561330 RBM42Q9BTD8 480 aaKnown RBP14.45□□□□□ -0.1
USP8-218ENST00000561330 ZNF692Q9BU19 519 aaPredicted RBP14.43□□□□□ -0.1
USP8-218ENST00000561330 SSUH2Q9Y2M2 353 aa14.35□□□□□ -0.11
USP8-218ENST00000561330 AKT1S1Q96B36 256 aa14.27□□□□□ -0.13
USP8-218ENST00000561330 PABPN1Q86U42 306 aaKnown RBP eCLIP14.24□□□□□ -0.13
USP8-218ENST00000561330 PROM2Q8N271 834 aa14.24□□□□□ -0.13
USP8-218ENST00000561330 REM2Q8IYK8 340 aaPredicted RBP14.12□□□□□ -0.15
USP8-218ENST00000561330 FBXO3Q9UK99 471 aa14.07□□□□□ -0.16
USP8-218ENST00000561330 SPDYE1Q8NFV5 336 aaPredicted RBP14.06□□□□□ -0.16
USP8-218ENST00000561330 STAG3Q9UJ98 1225 aa14.03□□□□□ -0.16
USP8-218ENST00000561330 CLEC11AQ9Y240 323 aa13.98□□□□□ -0.17
USP8-218ENST00000561330 PITPNM1O00562 1244 aa13.95□□□□□ -0.18
USP8-218ENST00000561330 POTEHQ6S545 545 aa13.91□□□□□ -0.18
USP8-218ENST00000561330 PRR29P0C7W0 189 aa13.86□□□□□ -0.19
USP8-218ENST00000561330 VASPP50552 380 aaPredicted RBP13.85□□□□□ -0.19
USP8-218ENST00000561330 CHRDL2Q6WN34 429 aa13.81□□□□□ -0.2
USP8-218ENST00000561330 MIER1Q8N108 512 aa13.78□□□□□ -0.2
USP8-218ENST00000561330 PLCD3Q8N3E9 789 aa13.76□□□□□ -0.21
USP8-218ENST00000561330 PLEKHG5O94827 1062 aa13.73□□□□□ -0.21
USP8-218ENST00000561330 FXR2P51116 673 aaKnown RBP eCLIP13.67□□□□□ -0.225e-6■■■□□ 14.9
USP8-218ENST00000561330 CREBZFQ9NS37 354 aa13.67□□□□□ -0.22
USP8-218ENST00000561330 IFNLR1Q8IU57 520 aaPredicted RBP13.64□□□□□ -0.23
USP8-218ENST00000561330 KLHL34Q8N239 644 aa13.64□□□□□ -0.23
USP8-218ENST00000561330 PIP4P2Q8N4L2 257 aa13.63□□□□□ -0.23
USP8-218ENST00000561330 ZBTB47Q9UFB7 747 aaPredicted RBP13.62□□□□□ -0.23
USP8-218ENST00000561330 PRKAR2AP13861 404 aaKnown RBP13.61□□□□□ -0.23
USP8-218ENST00000561330 CHADLQ6NUI6 762 aa13.6□□□□□ -0.23
USP8-218ENST00000561330 MNX1P50219 401 aaPredicted RBP13.52□□□□□ -0.25
USP8-218ENST00000561330 SPOCK2Q92563 424 aa13.51□□□□□ -0.25
USP8-218ENST00000561330 FARP1Q9Y4F1 1045 aaPredicted RBP13.51□□□□□ -0.25
USP8-218ENST00000561330 NPM1P06748 294 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP8-218ENST00000561330 NUBP1P53384 320 aa13.38□□□□□ -0.27
USP8-218ENST00000561330 AMER1Q5JTC6 1135 aaPredicted RBP13.37□□□□□ -0.27
USP8-218ENST00000561330 RASEFQ8IZ41 740 aa13.32□□□□□ -0.28
USP8-218ENST00000561330 FAM212AQ96EL1 285 aa13.31□□□□□ -0.28
USP8-218ENST00000561330 RTN4Q9NQC3 1192 aaKnown RBP13.31□□□□□ -0.28
USP8-218ENST00000561330 CIZ1Q9ULV3 898 aaPredicted RBP13.3□□□□□ -0.28
USP8-218ENST00000561330 DCAF8Q5TAQ9 597 aa13.29□□□□□ -0.28
USP8-218ENST00000561330 GSE1Q14687 1217 aa13.28□□□□□ -0.28
USP8-218ENST00000561330 PAK3O75914 559 aaPredicted RBP13.25□□□□□ -0.29
USP8-218ENST00000561330 TSPYL2Q9H2G4 693 aaPredicted RBP13.25□□□□□ -0.29
USP8-218ENST00000561330 CD44P16070 742 aaKnown RBP13.23□□□□□ -0.29
USP8-218ENST00000561330 C19orf67A6NJJ6 358 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms