RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 CHIC1Q5VXU3 224 aa15.63■□□□□ 0.09
TSPAN3-209ENST00000560715 AEBP2Q6ZN18 517 aaPredicted RBP15.11■□□□□ 0.01
TSPAN3-209ENST00000560715 EHMT2Q96KQ7 1210 aa14.45□□□□□ -0.1
TSPAN3-209ENST00000560715 SLC24A1O60721 1099 aa14.29□□□□□ -0.12
TSPAN3-209ENST00000560715 PHF23Q9BUL5 403 aaPredicted RBP14.21□□□□□ -0.13
TSPAN3-209ENST00000560715 PLPPR3Q6T4P5 718 aa13.77□□□□□ -0.21
TSPAN3-209ENST00000560715 RTN4Q9NQC3 1192 aaKnown RBP13.47□□□□□ -0.25
TSPAN3-209ENST00000560715 KCNA4P22459 653 aa13.46□□□□□ -0.25
TSPAN3-209ENST00000560715 CSRNP3Q8WYN3 585 aa13.36□□□□□ -0.27
TSPAN3-209ENST00000560715 ADRA2BP18089 450 aa12.91□□□□□ -0.34
TSPAN3-209ENST00000560715 AMER1Q5JTC6 1135 aaPredicted RBP12.9□□□□□ -0.34
TSPAN3-209ENST00000560715 SLC4A1APQ9BWU0 796 aaKnown RBP12.83□□□□□ -0.36
TSPAN3-209ENST00000560715 PRKCSHP14314 528 aaPredicted RBP12.78□□□□□ -0.36
TSPAN3-209ENST00000560715 NISCHQ9Y2I1 1504 aa12.66□□□□□ -0.38
TSPAN3-209ENST00000560715 NCBP3Q53F19 620 aaKnown RBP12.63□□□□□ -0.39
TSPAN3-209ENST00000560715 ZBTB22O15209 634 aa12.51□□□□□ -0.41
TSPAN3-209ENST00000560715 DAXXQ9UER7 740 aaPredicted RBP12.37□□□□□ -0.43
TSPAN3-209ENST00000560715 PPP6R1Q9UPN7 881 aa12.28□□□□□ -0.44
TSPAN3-209ENST00000560715 TIMELESSQ9UNS1 1208 aa12.23□□□□□ -0.45
TSPAN3-209ENST00000560715 TAOK2Q9UL54 1235 aa12.2□□□□□ -0.46
TSPAN3-209ENST00000560715 SENP3Q9H4L4 574 aaPredicted RBP12.14□□□□□ -0.47
TSPAN3-209ENST00000560715 TPRNQ4KMQ1 711 aa12.11□□□□□ -0.47
TSPAN3-209ENST00000560715 TULP1O00294 542 aaPredicted RBP12.1□□□□□ -0.47
TSPAN3-209ENST00000560715 NPM3O75607 178 aaKnown RBP12.1□□□□□ -0.47
TSPAN3-209ENST00000560715 FKBP8Q14318 412 aa12.04□□□□□ -0.48
TSPAN3-209ENST00000560715 HAP1P54257 671 aaPredicted RBP12.03□□□□□ -0.48
TSPAN3-209ENST00000560715 PLCB2Q00722 1185 aa12.01□□□□□ -0.49
TSPAN3-209ENST00000560715 BCANQ96GW7 911 aa11.99□□□□□ -0.49
TSPAN3-209ENST00000560715 PPP4R3CPQ6ZMV5 832 aa11.96□□□□□ -0.49
TSPAN3-209ENST00000560715 ARXQ96QS3 562 aa11.84□□□□□ -0.51
TSPAN3-209ENST00000560715 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.53
TSPAN3-209ENST00000560715 FBLN2P98095 1184 aa11.65□□□□□ -0.54
TSPAN3-209ENST00000560715 FOXD4L1Q9NU39 408 aa11.65□□□□□ -0.54
TSPAN3-209ENST00000560715 GTF3C3Q9Y5Q9 886 aa11.64□□□□□ -0.55
TSPAN3-209ENST00000560715 KDM2AQ9Y2K7 1162 aa11.64□□□□□ -0.55
TSPAN3-209ENST00000560715 HOMEZQ8IX15 550 aa11.6□□□□□ -0.55
TSPAN3-209ENST00000560715 PODXL2Q9NZ53 605 aa11.55□□□□□ -0.56
TSPAN3-209ENST00000560715 KLHL34Q8N239 644 aa11.47□□□□□ -0.57
TSPAN3-209ENST00000560715 VSIG10Q8N0Z9 540 aa11.46□□□□□ -0.58
TSPAN3-209ENST00000560715 RANGAP1P46060 587 aaPredicted RBP11.45□□□□□ -0.58
TSPAN3-209ENST00000560715 FOXD1Q16676 465 aa11.45□□□□□ -0.58
TSPAN3-209ENST00000560715 PELP1Q8IZL8 1130 aaKnown RBP11.41□□□□□ -0.58
TSPAN3-209ENST00000560715 TMEM132AQ24JP5 1023 aa11.37□□□□□ -0.59
TSPAN3-209ENST00000560715 SUPT5HO00267 1087 aaKnown RBP11.36□□□□□ -0.59
TSPAN3-209ENST00000560715 C14orf37Q86TY3 774 aa11.36□□□□□ -0.59
TSPAN3-209ENST00000560715 CFAP44Q96MT7 982 aa11.28□□□□□ -0.6
TSPAN3-209ENST00000560715 PAXIP1Q6ZW49 1069 aaPredicted RBP11.24□□□□□ -0.61
TSPAN3-209ENST00000560715 TSHZ2Q9NRE2 1034 aa11.18□□□□□ -0.62
TSPAN3-209ENST00000560715 UBTFP17480 764 aaKnown RBP11.15□□□□□ -0.62
TSPAN3-209ENST00000560715 TRIM26Q12899 539 aaPredicted RBP11.14□□□□□ -0.63
TSPAN3-209ENST00000560715 NPM2Q86SE8 214 aaKnown RBP11.14□□□□□ -0.63
TSPAN3-209ENST00000560715 PIAS4Q8N2W9 510 aaPredicted RBP11.14□□□□□ -0.63
TSPAN3-209ENST00000560715 MYT1Q01538 1121 aa11.13□□□□□ -0.63
TSPAN3-209ENST00000560715 CNKSR2Q8WXI2 1034 aa11.13□□□□□ -0.63
TSPAN3-209ENST00000560715 NPM1P06748 294 aaKnown RBP eCLIP11.11□□□□□ -0.63
TSPAN3-209ENST00000560715 PKD2Q13563 968 aa11.1□□□□□ -0.63
TSPAN3-209ENST00000560715 APLP2Q06481 763 aa11.09□□□□□ -0.63
TSPAN3-209ENST00000560715 NBR1Q14596 966 aa11.06□□□□□ -0.64
TSPAN3-209ENST00000560715 HRCP23327 699 aa11.03□□□□□ -0.64
TSPAN3-209ENST00000560715 SLC4A2P04920 1241 aa11.02□□□□□ -0.65
TSPAN3-209ENST00000560715 ZBTB4Q9P1Z0 1013 aaPredicted RBP11□□□□□ -0.65
TSPAN3-209ENST00000560715 IFNLR1Q8IU57 520 aaPredicted RBP10.99□□□□□ -0.65
TSPAN3-209ENST00000560715 CCDC180Q9P1Z9 1646 aa10.97□□□□□ -0.65
TSPAN3-209ENST00000560715 ERICH6Q7L0X2 663 aa10.94□□□□□ -0.66
TSPAN3-209ENST00000560715 TRHP20396 242 aaPredicted RBP10.91□□□□□ -0.66
TSPAN3-209ENST00000560715 BBXQ8WY36 941 aaPredicted RBP10.88□□□□□ -0.67
TSPAN3-209ENST00000560715 VASPP50552 380 aaPredicted RBP10.88□□□□□ -0.67
TSPAN3-209ENST00000560715 MAPK8IP2Q13387 824 aaPredicted RBP10.88□□□□□ -0.67
TSPAN3-209ENST00000560715 ATF5Q9Y2D1 282 aaPredicted RBP10.88□□□□□ -0.67
TSPAN3-209ENST00000560715 ARID3AQ99856 593 aa10.83□□□□□ -0.68
TSPAN3-209ENST00000560715 SPRYD3Q8NCJ5 442 aa10.82□□□□□ -0.68
TSPAN3-209ENST00000560715 ATXN8OSP0DMR3 200 aa10.77□□□□□ -0.69
TSPAN3-209ENST00000560715 LOC105371045A0A1W2PR82 267 aa10.76□□□□□ -0.69
TSPAN3-209ENST00000560715 MYCNP04198 464 aaPredicted RBP10.75□□□□□ -0.69
TSPAN3-209ENST00000560715 FBXO3Q9UK99 471 aa10.75□□□□□ -0.69
TSPAN3-209ENST00000560715 RGL2O15211 777 aa10.74□□□□□ -0.69
TSPAN3-209ENST00000560715 ECM2O94769 699 aaPredicted RBP10.72□□□□□ -0.69
TSPAN3-209ENST00000560715 ZCCHC6Q5VYS8 1495 aaKnown RBP10.68□□□□□ -0.7
TSPAN3-209ENST00000560715 PPARGC1BQ86YN6 1023 aaKnown RBP10.67□□□□□ -0.7
TSPAN3-209ENST00000560715 SCAF1Q9H7N4 1312 aaKnown RBP10.66□□□□□ -0.7
TSPAN3-209ENST00000560715 BRPF1P55201 1214 aaPredicted RBP10.65□□□□□ -0.7
TSPAN3-209ENST00000560715 DNAJC5BQ9UF47 199 aa10.65□□□□□ -0.7
TSPAN3-209ENST00000560715 CHGAP10645 457 aaKnown RBP10.65□□□□□ -0.7
TSPAN3-209ENST00000560715 EIF5BO60841 1220 aaKnown RBP10.64□□□□□ -0.71
TSPAN3-209ENST00000560715 TTBK1Q5TCY1 1321 aaPredicted RBP10.62□□□□□ -0.71
TSPAN3-209ENST00000560715 SPDYE4A6NLX3 237 aa10.58□□□□□ -0.72
TSPAN3-209ENST00000560715 DNAJC5Q9H3Z4 198 aa10.56□□□□□ -0.72
TSPAN3-209ENST00000560715 RNF216Q9NWF9 866 aaPredicted RBP10.56□□□□□ -0.72
TSPAN3-209ENST00000560715 ARID3CA6NKF2 412 aa10.52□□□□□ -0.72
TSPAN3-209ENST00000560715 C1orf115Q9H7X2 142 aa10.52□□□□□ -0.72
TSPAN3-209ENST00000560715 NEUROD2Q15784 382 aa10.51□□□□□ -0.73
TSPAN3-209ENST00000560715 PCGF6Q9BYE7 350 aa10.5□□□□□ -0.73
TSPAN3-209ENST00000560715 PLEKHG5O94827 1062 aa10.49□□□□□ -0.73
TSPAN3-209ENST00000560715 DCAF1Q9Y4B6 1507 aa10.49□□□□□ -0.73
TSPAN3-209ENST00000560715 NECTIN2Q92692 538 aa10.49□□□□□ -0.73
TSPAN3-209ENST00000560715 IGSF3O75054 1194 aa10.48□□□□□ -0.73
TSPAN3-209ENST00000560715 SHROOM4Q9ULL8 1493 aa10.43□□□□□ -0.74
TSPAN3-209ENST00000560715 ABCC9O60706 1549 aa10.43□□□□□ -0.74
TSPAN3-209ENST00000560715 LMOD2Q6P5Q4 547 aa10.4□□□□□ -0.74
TSPAN3-209ENST00000560715 CCDC9Q9Y3X0 531 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms