RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
LRRC28-218ENST00000560236 CHIC1Q5VXU3 224 aa23.91■■□□□ 1.42
LRRC28-218ENST00000560236 SENP3Q9H4L4 574 aaPredicted RBP21.39■■□□□ 1.01
LRRC28-218ENST00000560236 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
LRRC28-218ENST00000560236 FOXD1Q16676 465 aa19.9■□□□□ 0.78
LRRC28-218ENST00000560236 PLPPR3Q6T4P5 718 aa19.17■□□□□ 0.66
LRRC28-218ENST00000560236 PPP6R1Q9UPN7 881 aa18.68■□□□□ 0.58
LRRC28-218ENST00000560236 ADRA2BP18089 450 aa18.65■□□□□ 0.58
LRRC28-218ENST00000560236 PIAS4Q8N2W9 510 aaPredicted RBP18.65■□□□□ 0.58
LRRC28-218ENST00000560236 MSH5O43196 834 aa18.61■□□□□ 0.57
LRRC28-218ENST00000560236 POTEDQ86YR6 584 aa17.96■□□□□ 0.47
LRRC28-218ENST00000560236 MAPK8IP2Q13387 824 aaPredicted RBP17.09■□□□□ 0.33
LRRC28-218ENST00000560236 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
LRRC28-218ENST00000560236 DMRT2Q9Y5R5 561 aa16.96■□□□□ 0.31
LRRC28-218ENST00000560236 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
LRRC28-218ENST00000560236 CNKSR2Q8WXI2 1034 aa16.47■□□□□ 0.23
LRRC28-218ENST00000560236 HOXD11P31277 338 aaPredicted RBP16.37■□□□□ 0.21
LRRC28-218ENST00000560236 DCAF8L1A6NGE4 600 aa16.31■□□□□ 0.2
LRRC28-218ENST00000560236 RNF216Q9NWF9 866 aaPredicted RBP16.3■□□□□ 0.2
LRRC28-218ENST00000560236 NCBP3Q53F19 620 aaKnown RBP16.22■□□□□ 0.19
LRRC28-218ENST00000560236 NPM3O75607 178 aaKnown RBP15.95■□□□□ 0.14
LRRC28-218ENST00000560236 CACNB1Q02641 598 aaPredicted RBP15.92■□□□□ 0.14
LRRC28-218ENST00000560236 RNF39Q9H2S5 420 aa15.88■□□□□ 0.13
LRRC28-218ENST00000560236 DNAJC5BQ9UF47 199 aa15.79■□□□□ 0.12
LRRC28-218ENST00000560236 KCNA4P22459 653 aa15.75■□□□□ 0.11
LRRC28-218ENST00000560236 C1QBPQ07021 282 aaKnown RBP15.66■□□□□ 0.1
LRRC28-218ENST00000560236 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.65■□□□□ 0.1
LRRC28-218ENST00000560236 U3KPZ7 1027 aaPredicted RBP15.29■□□□□ 0.04
LRRC28-218ENST00000560236 SLC4A2P04920 1241 aa15.2■□□□□ 0.02
LRRC28-218ENST00000560236 CAPN15O75808 1086 aa15.04■□□□□ -0
LRRC28-218ENST00000560236 SPINK5Q9NQ38 1064 aaPredicted RBP15.04■□□□□ -0
LRRC28-218ENST00000560236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.93□□□□□ -0.02
LRRC28-218ENST00000560236 HNRNPUL2Q1KMD3 747 aaKnown RBP14.93□□□□□ -0.02
LRRC28-218ENST00000560236 APLP2Q06481 763 aa14.92□□□□□ -0.02
LRRC28-218ENST00000560236 DSG3P32926 999 aa14.9□□□□□ -0.02
LRRC28-218ENST00000560236 SLC4A1APQ9BWU0 796 aaKnown RBP14.9□□□□□ -0.02
LRRC28-218ENST00000560236 SAMD1Q6SPF0 538 aaPredicted RBP14.85□□□□□ -0.03
LRRC28-218ENST00000560236 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
LRRC28-218ENST00000560236 ZNF219Q9P2Y4 722 aaPredicted RBP14.8□□□□□ -0.04
LRRC28-218ENST00000560236 MYCNP04198 464 aaPredicted RBP14.77□□□□□ -0.05
LRRC28-218ENST00000560236 ABCB7O75027 752 aa14.7□□□□□ -0.06
LRRC28-218ENST00000560236 FOXD4L1Q9NU39 408 aa14.67□□□□□ -0.06
LRRC28-218ENST00000560236 ZBTB22O15209 634 aa14.47□□□□□ -0.09
LRRC28-218ENST00000560236 POLA2Q14181 598 aa14.44□□□□□ -0.1
LRRC28-218ENST00000560236 ATF5Q9Y2D1 282 aaPredicted RBP14.4□□□□□ -0.1
LRRC28-218ENST00000560236 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
LRRC28-218ENST00000560236 ATXN8OSP0DMR3 200 aa14.21□□□□□ -0.13
LRRC28-218ENST00000560236 ZBTB12Q9Y330 459 aaPredicted RBP14.18□□□□□ -0.14
LRRC28-218ENST00000560236 POTEHQ6S545 545 aa14.12□□□□□ -0.15
LRRC28-218ENST00000560236 OSCARQ8IYS5 282 aa13.97□□□□□ -0.17
LRRC28-218ENST00000560236 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
LRRC28-218ENST00000560236 CSRNP3Q8WYN3 585 aa13.89□□□□□ -0.19
LRRC28-218ENST00000560236 CHRDL2Q6WN34 429 aa13.88□□□□□ -0.19
LRRC28-218ENST00000560236 FBLN2P98095 1184 aa13.87□□□□□ -0.19
LRRC28-218ENST00000560236 EHMT2Q96KQ7 1210 aa13.81□□□□□ -0.2
LRRC28-218ENST00000560236 REM2Q8IYK8 340 aaPredicted RBP13.79□□□□□ -0.2
LRRC28-218ENST00000560236 MKRN4PQ13434 485 aaPredicted RBP13.74□□□□□ -0.21
LRRC28-218ENST00000560236 SPDYE2BA6NHP3 402 aa13.73□□□□□ -0.21
LRRC28-218ENST00000560236 SPDYE6P0CI01 402 aa13.73□□□□□ -0.21
LRRC28-218ENST00000560236 SPDYE2Q495Y8 402 aa13.73□□□□□ -0.21
LRRC28-218ENST00000560236 PITPNM1O00562 1244 aa13.64□□□□□ -0.23
LRRC28-218ENST00000560236 ZNF692Q9BU19 519 aaPredicted RBP13.6□□□□□ -0.23
LRRC28-218ENST00000560236 PIP4P2Q8N4L2 257 aa13.56□□□□□ -0.24
LRRC28-218ENST00000560236 SSUH2Q9Y2M2 353 aa13.54□□□□□ -0.24
LRRC28-218ENST00000560236 FXR2P51116 673 aaKnown RBP eCLIP13.49□□□□□ -0.25
LRRC28-218ENST00000560236 SPDYE1Q8NFV5 336 aaPredicted RBP13.47□□□□□ -0.25
LRRC28-218ENST00000560236 CLEC11AQ9Y240 323 aa13.45□□□□□ -0.26
LRRC28-218ENST00000560236 PABPN1Q86U42 306 aaKnown RBP eCLIP13.39□□□□□ -0.27
LRRC28-218ENST00000560236 HAX1O00165 279 aa13.32□□□□□ -0.28
LRRC28-218ENST00000560236 PRKAR2AP13861 404 aaKnown RBP13.3□□□□□ -0.28
LRRC28-218ENST00000560236 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
LRRC28-218ENST00000560236 PRR29P0C7W0 189 aa13.25□□□□□ -0.29
LRRC28-218ENST00000560236 SPDYE4A6NLX3 237 aa13.18□□□□□ -0.3
LRRC28-218ENST00000560236 CHADLQ6NUI6 762 aa13.17□□□□□ -0.3
LRRC28-218ENST00000560236 EVX2Q03828 476 aa13.11□□□□□ -0.31
LRRC28-218ENST00000560236 STAG3Q9UJ98 1225 aa13.06□□□□□ -0.32
LRRC28-218ENST00000560236 C19orf67A6NJJ6 358 aa13.05□□□□□ -0.32
LRRC28-218ENST00000560236 FARP1Q9Y4F1 1045 aaPredicted RBP12.99□□□□□ -0.33
LRRC28-218ENST00000560236 CREBZFQ9NS37 354 aa12.91□□□□□ -0.34
LRRC28-218ENST00000560236 CD44P16070 742 aaKnown RBP12.89□□□□□ -0.35
LRRC28-218ENST00000560236 GABBR2O75899 941 aa12.84□□□□□ -0.35
LRRC28-218ENST00000560236 PROM2Q8N271 834 aa12.83□□□□□ -0.36
LRRC28-218ENST00000560236 ZRANB1Q9UGI0 708 aa12.72□□□□□ -0.37
LRRC28-218ENST00000560236 NPM1P06748 294 aaKnown RBP eCLIP12.71□□□□□ -0.37
LRRC28-218ENST00000560236 MNX1P50219 401 aaPredicted RBP12.69□□□□□ -0.38
LRRC28-218ENST00000560236 CLCN6P51797 869 aa12.69□□□□□ -0.38
LRRC28-218ENST00000560236 ZNF579Q8NAF0 562 aaKnown RBP12.68□□□□□ -0.38
LRRC28-218ENST00000560236 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
LRRC28-218ENST00000560236 FKBP8Q14318 412 aa12.62□□□□□ -0.39
LRRC28-218ENST00000560236 MIER1Q8N108 512 aa12.58□□□□□ -0.4
LRRC28-218ENST00000560236 PLEKHG5O94827 1062 aa12.57□□□□□ -0.4
LRRC28-218ENST00000560236 DCBLD2Q96PD2 775 aa12.56□□□□□ -0.4
LRRC28-218ENST00000560236 POTEIP0CG38 1075 aa12.55□□□□□ -0.4
LRRC28-218ENST00000560236 PHF12Q96QT6 1004 aa12.55□□□□□ -0.4
LRRC28-218ENST00000560236 GALR2O43603 387 aaPredicted RBP12.51□□□□□ -0.41
LRRC28-218ENST00000560236 PLCD3Q8N3E9 789 aa12.5□□□□□ -0.41
LRRC28-218ENST00000560236 TSPYL2Q9H2G4 693 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-218ENST00000560236 LHX8Q68G74 356 aa12.47□□□□□ -0.41
LRRC28-218ENST00000560236 ZBTB47Q9UFB7 747 aaPredicted RBP12.4□□□□□ -0.42
LRRC28-218ENST00000560236 CCDC61Q9Y6R9 512 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms