RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 NISCHQ9Y2I1 1504 aa21.05■□□□□ 0.96
LRRC28-216ENST00000559819 SHROOM4Q9ULL8 1493 aa17.99■□□□□ 0.47
LRRC28-216ENST00000559819 CCDC180Q9P1Z9 1646 aa17.88■□□□□ 0.45
LRRC28-216ENST00000559819 ZCCHC6Q5VYS8 1495 aaKnown RBP17.8■□□□□ 0.44
LRRC28-216ENST00000559819 SUPT5HO00267 1087 aaKnown RBP17.59■□□□□ 0.41
LRRC28-216ENST00000559819 DCAF8L2P0C7V8 631 aa17.53■□□□□ 0.4
LRRC28-216ENST00000559819 DCAF1Q9Y4B6 1507 aa17.22■□□□□ 0.35
LRRC28-216ENST00000559819 CHIC1Q5VXU3 224 aa17.05■□□□□ 0.32
LRRC28-216ENST00000559819 MYO15BQ96JP2 1530 aa17.01■□□□□ 0.31
LRRC28-216ENST00000559819 SCRIBQ14160 1630 aa16.83■□□□□ 0.29
LRRC28-216ENST00000559819 ABCC9O60706 1549 aa16.78■□□□□ 0.28
LRRC28-216ENST00000559819 RSF1Q96T23 1441 aaPredicted RBP16.65■□□□□ 0.26
LRRC28-216ENST00000559819 LOC105371045A0A1W2PR82 267 aa16.57■□□□□ 0.24
LRRC28-216ENST00000559819 NACADO15069 1562 aa16.56■□□□□ 0.24
LRRC28-216ENST00000559819 RB1CC1Q8TDY2 1594 aa16.48■□□□□ 0.23
LRRC28-216ENST00000559819 CECR2Q9BXF3 1484 aa16.47■□□□□ 0.23
LRRC28-216ENST00000559819 PCGF6Q9BYE7 350 aa16.47■□□□□ 0.23
LRRC28-216ENST00000559819 HRCP23327 699 aa16.39■□□□□ 0.22
LRRC28-216ENST00000559819 MROH2BQ7Z745 1585 aa16.39■□□□□ 0.21
LRRC28-216ENST00000559819 TRIM41Q8WV44 630 aa16.35■□□□□ 0.21
LRRC28-216ENST00000559819 WIZO95785 1651 aa16.3■□□□□ 0.2
LRRC28-216ENST00000559819 FAM9AQ8IZU1 332 aaPredicted RBP16.27■□□□□ 0.2
LRRC28-216ENST00000559819 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
LRRC28-216ENST00000559819 BAZ1AQ9NRL2 1556 aaPredicted RBP16.16■□□□□ 0.18
LRRC28-216ENST00000559819 PPARGC1BQ86YN6 1023 aaKnown RBP16.15■□□□□ 0.18
LRRC28-216ENST00000559819 TRIM26Q12899 539 aaPredicted RBP16.12■□□□□ 0.17
LRRC28-216ENST00000559819 UNC13AQ9UPW8 1703 aa16.08■□□□□ 0.17
LRRC28-216ENST00000559819 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
LRRC28-216ENST00000559819 EIF4G1Q04637 1599 aaKnown RBP16.04■□□□□ 0.16
LRRC28-216ENST00000559819 TOP2AP11388 1531 aaKnown RBP16.02■□□□□ 0.15
LRRC28-216ENST00000559819 PABPN1Q86U42 306 aaKnown RBP eCLIP15.99■□□□□ 0.15
LRRC28-216ENST00000559819 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
LRRC28-216ENST00000559819 SMARCA2P51531 1590 aa15.94■□□□□ 0.14
LRRC28-216ENST00000559819 ABCC8Q09428 1581 aa15.93■□□□□ 0.14
LRRC28-216ENST00000559819 BICRAQ9NZM4 1560 aa15.91■□□□□ 0.14
LRRC28-216ENST00000559819 SOGA1O94964 1423 aa15.77■□□□□ 0.12
LRRC28-216ENST00000559819 RUSC2Q8N2Y8 1516 aa15.71■□□□□ 0.11
LRRC28-216ENST00000559819 PEG3Q9GZU2 1588 aa15.71■□□□□ 0.11
LRRC28-216ENST00000559819 ZEB1P37275 1124 aaPredicted RBP15.69■□□□□ 0.1
LRRC28-216ENST00000559819 ATAD2BQ9ULI0 1458 aa15.66■□□□□ 0.1
LRRC28-216ENST00000559819 CEP162Q5TB80 1403 aa15.64■□□□□ 0.09
LRRC28-216ENST00000559819 CSRNP3Q8WYN3 585 aa15.64■□□□□ 0.09
LRRC28-216ENST00000559819 TTBK1Q5TCY1 1321 aaPredicted RBP15.64■□□□□ 0.09
LRRC28-216ENST00000559819 WRNQ14191 1432 aaPredicted RBP eCLIP15.64■□□□□ 0.09
LRRC28-216ENST00000559819 BAZ1BQ9UIG0 1483 aaKnown RBP15.61■□□□□ 0.09
LRRC28-216ENST00000559819 TNIKQ9UKE5 1360 aa15.6■□□□□ 0.09
LRRC28-216ENST00000559819 UBTFP17480 764 aaKnown RBP15.59■□□□□ 0.09
LRRC28-216ENST00000559819 EEA1Q15075 1411 aa15.59■□□□□ 0.09
LRRC28-216ENST00000559819 SYNJ1O43426 1573 aa15.58■□□□□ 0.09
LRRC28-216ENST00000559819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
LRRC28-216ENST00000559819 GOLGA3Q08378 1498 aa15.53■□□□□ 0.08
LRRC28-216ENST00000559819 CCER1Q8TC90 406 aaPredicted RBP15.47■□□□□ 0.07
LRRC28-216ENST00000559819 CEP164Q9UPV0 1460 aa15.44■□□□□ 0.06
LRRC28-216ENST00000559819 KIF21BO75037 1637 aa15.41■□□□□ 0.06
LRRC28-216ENST00000559819 RAPGEF2Q9Y4G8 1499 aa15.38■□□□□ 0.05
LRRC28-216ENST00000559819 CLIP1P30622 1438 aa15.36■□□□□ 0.05
LRRC28-216ENST00000559819 RANGAP1P46060 587 aaPredicted RBP15.36■□□□□ 0.05
LRRC28-216ENST00000559819 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
LRRC28-216ENST00000559819 NCAPD3P42695 1498 aa15.34■□□□□ 0.05
LRRC28-216ENST00000559819 HMGXB3Q12766 1538 aa15.32■□□□□ 0.04
LRRC28-216ENST00000559819 BIVM-ERCC5R4GMW8 1640 aa15.3■□□□□ 0.04
LRRC28-216ENST00000559819 VPS8Q8N3P4 1428 aa15.28■□□□□ 0.04
LRRC28-216ENST00000559819 CUX1P39880 1505 aa15.26■□□□□ 0.03
LRRC28-216ENST00000559819 HNRNPUL2Q1KMD3 747 aaKnown RBP15.23■□□□□ 0.03
LRRC28-216ENST00000559819 CFTRP13569 1480 aa15.21■□□□□ 0.02
LRRC28-216ENST00000559819 PRXQ9BXM0 1461 aa15.2■□□□□ 0.02
LRRC28-216ENST00000559819 APLP2Q06481 763 aa15.19■□□□□ 0.02
LRRC28-216ENST00000559819 ERICH3Q5RHP9 1530 aa15.17■□□□□ 0.02
LRRC28-216ENST00000559819 ARAP1Q96P48 1450 aa15.14■□□□□ 0.01
LRRC28-216ENST00000559819 KIF27Q86VH2 1401 aa15.14■□□□□ 0.01
LRRC28-216ENST00000559819 DIEXFQ68CQ4 756 aaKnown RBP15.12■□□□□ 0.01
LRRC28-216ENST00000559819 SCAF1Q9H7N4 1312 aaKnown RBP15.09■□□□□ 0.01
LRRC28-216ENST00000559819 KANK4Q5T7N3 995 aaPredicted RBP15.07■□□□□ 0
LRRC28-216ENST00000559819 CADPSQ9ULU8 1353 aa15.06■□□□□ 0
LRRC28-216ENST00000559819 CUX2O14529 1486 aa15.05■□□□□ -0
LRRC28-216ENST00000559819 PRDM2Q13029 1718 aa15.04■□□□□ -0
LRRC28-216ENST00000559819 ZNF316A6NFI3 1004 aaPredicted RBP15.03■□□□□ -0
LRRC28-216ENST00000559819 ARHGAP35Q9NRY4 1499 aa15.01□□□□□ -0.01
LRRC28-216ENST00000559819 CC2D2AQ9P2K1 1620 aa15.01□□□□□ -0.01
LRRC28-216ENST00000559819 IGF1RP08069 1367 aa15□□□□□ -0.01
LRRC28-216ENST00000559819 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
LRRC28-216ENST00000559819 NEUROD1Q13562 356 aa14.97□□□□□ -0.01
LRRC28-216ENST00000559819 ACIN1Q9UKV3 1341 aaKnown RBP14.95□□□□□ -0.02
LRRC28-216ENST00000559819 CARMIL1Q5VZK9 1371 aa14.94□□□□□ -0.02
LRRC28-216ENST00000559819 FANCD2Q9BXW9 1451 aa14.92□□□□□ -0.02
LRRC28-216ENST00000559819 RRBP1Q9P2E9 1410 aaKnown RBP14.9□□□□□ -0.02
LRRC28-216ENST00000559819 DHX57Q6P158 1386 aaKnown RBP14.9□□□□□ -0.02
LRRC28-216ENST00000559819 RAD54L2Q9Y4B4 1467 aa14.88□□□□□ -0.03
LRRC28-216ENST00000559819 NESP48681 1621 aa14.88□□□□□ -0.03
LRRC28-216ENST00000559819 ITGAEP38570 1179 aa14.87□□□□□ -0.03
LRRC28-216ENST00000559819 CCNB3Q8WWL7 1395 aa14.86□□□□□ -0.03
LRRC28-216ENST00000559819 P3H3Q8IVL6 736 aa14.86□□□□□ -0.03
LRRC28-216ENST00000559819 CENPBP07199 599 aaPredicted RBP14.83□□□□□ -0.04
LRRC28-216ENST00000559819 MIER1Q8N108 512 aa14.83□□□□□ -0.04
LRRC28-216ENST00000559819 DNMBPQ6XZF7 1577 aa14.83□□□□□ -0.04
LRRC28-216ENST00000559819 TOPBP1Q92547 1522 aa14.82□□□□□ -0.04
LRRC28-216ENST00000559819 TIAM1Q13009 1591 aa14.82□□□□□ -0.04
LRRC28-216ENST00000559819 POLA1P09884 1462 aaPredicted RBP14.82□□□□□ -0.04
LRRC28-216ENST00000559819 YTHDC1Q96MU7 727 aaKnown RBP14.81□□□□□ -0.04
LRRC28-216ENST00000559819 GTF3C3Q9Y5Q9 886 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms