RNA–Protein interactions for RNA: ENST00000559754.1

SPG11-218, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 411 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-218ENST00000559754 AEBP2Q6ZN18 517 aaPredicted RBP23.27■■□□□ 1.32
SPG11-218ENST00000559754 CHIC1Q5VXU3 224 aa22.55■■□□□ 1.2
SPG11-218ENST00000559754 SENP3Q9H4L4 574 aaPredicted RBP19.91■□□□□ 0.78
SPG11-218ENST00000559754 PHF23Q9BUL5 403 aaPredicted RBP19.74■□□□□ 0.75
SPG11-218ENST00000559754 FOXD1Q16676 465 aa18.42■□□□□ 0.54
SPG11-218ENST00000559754 PLPPR3Q6T4P5 718 aa18.24■□□□□ 0.51
SPG11-218ENST00000559754 PPP6R1Q9UPN7 881 aa17.49■□□□□ 0.39
SPG11-218ENST00000559754 ADRA2BP18089 450 aa17.48■□□□□ 0.39
SPG11-218ENST00000559754 PIAS4Q8N2W9 510 aaPredicted RBP17.36■□□□□ 0.37
SPG11-218ENST00000559754 MSH5O43196 834 aa17.19■□□□□ 0.34
SPG11-218ENST00000559754 SCAF1Q9H7N4 1312 aaKnown RBP16.13■□□□□ 0.17
SPG11-218ENST00000559754 POTEDQ86YR6 584 aa16.03■□□□□ 0.16
SPG11-218ENST00000559754 PPP4R3CPQ6ZMV5 832 aa16■□□□□ 0.15
SPG11-218ENST00000559754 MAPK8IP2Q13387 824 aaPredicted RBP15.92■□□□□ 0.14
SPG11-218ENST00000559754 DMRT2Q9Y5R5 561 aa15.82■□□□□ 0.12
SPG11-218ENST00000559754 CNKSR2Q8WXI2 1034 aa15.65■□□□□ 0.1
SPG11-218ENST00000559754 NCBP3Q53F19 620 aaKnown RBP15.58■□□□□ 0.08
SPG11-218ENST00000559754 RNF216Q9NWF9 866 aaPredicted RBP15.4■□□□□ 0.06
SPG11-218ENST00000559754 HOXD11P31277 338 aaPredicted RBP15.39■□□□□ 0.05
SPG11-218ENST00000559754 KCNA4P22459 653 aa15.29■□□□□ 0.04
SPG11-218ENST00000559754 NPM3O75607 178 aaKnown RBP15.26■□□□□ 0.03
SPG11-218ENST00000559754 DCAF8L1A6NGE4 600 aa15.15■□□□□ 0.02
SPG11-218ENST00000559754 DNAJC5BQ9UF47 199 aa14.92□□□□□ -0.02
SPG11-218ENST00000559754 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.06
SPG11-218ENST00000559754 RNF39Q9H2S5 420 aa14.65□□□□□ -0.06
SPG11-218ENST00000559754 SLC4A1APQ9BWU0 796 aaKnown RBP14.57□□□□□ -0.08
SPG11-218ENST00000559754 C1QBPQ07021 282 aaKnown RBP14.51□□□□□ -0.09
SPG11-218ENST00000559754 CACNB1Q02641 598 aaPredicted RBP14.48□□□□□ -0.09
SPG11-218ENST00000559754 SLC4A2P04920 1241 aa14.45□□□□□ -0.1
SPG11-218ENST00000559754 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
SPG11-218ENST00000559754 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.22□□□□□ -0.13
SPG11-218ENST00000559754 HNRNPUL2Q1KMD3 747 aaKnown RBP14.22□□□□□ -0.13
SPG11-218ENST00000559754 FOXD4L1Q9NU39 408 aa14.21□□□□□ -0.13
SPG11-218ENST00000559754 MYCNP04198 464 aaPredicted RBP14.17□□□□□ -0.14
SPG11-218ENST00000559754 APLP2Q06481 763 aa14.16□□□□□ -0.14
SPG11-218ENST00000559754 SAMD1Q6SPF0 538 aaPredicted RBP14.13□□□□□ -0.15
SPG11-218ENST00000559754 CAPN15O75808 1086 aa14.04□□□□□ -0.16
SPG11-218ENST00000559754 ZBTB22O15209 634 aa14.03□□□□□ -0.16
SPG11-218ENST00000559754 SPINK5Q9NQ38 1064 aaPredicted RBP14.02□□□□□ -0.17
SPG11-218ENST00000559754 ZNF219Q9P2Y4 722 aaPredicted RBP13.94□□□□□ -0.18
SPG11-218ENST00000559754 TRHP20396 242 aaPredicted RBP13.9□□□□□ -0.18
SPG11-218ENST00000559754 DSG3P32926 999 aa13.84□□□□□ -0.19
SPG11-218ENST00000559754 EHMT2Q96KQ7 1210 aa13.81□□□□□ -0.2
SPG11-218ENST00000559754 ATXN8OSP0DMR3 200 aa13.77□□□□□ -0.21
SPG11-218ENST00000559754 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.21
SPG11-218ENST00000559754 ABCB7O75027 752 aa13.71□□□□□ -0.21
SPG11-218ENST00000559754 ATF5Q9Y2D1 282 aaPredicted RBP13.7□□□□□ -0.22
SPG11-218ENST00000559754 POLA2Q14181 598 aa13.61□□□□□ -0.23
SPG11-218ENST00000559754 ZBTB12Q9Y330 459 aaPredicted RBP13.46□□□□□ -0.25
SPG11-218ENST00000559754 RBM42Q9BTD8 480 aaKnown RBP13.29□□□□□ -0.28
SPG11-218ENST00000559754 FBLN2P98095 1184 aa13.28□□□□□ -0.28
SPG11-218ENST00000559754 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
SPG11-218ENST00000559754 MKRN4PQ13434 485 aaPredicted RBP13.1□□□□□ -0.31
SPG11-218ENST00000559754 SPDYE2BA6NHP3 402 aa13.03□□□□□ -0.32
SPG11-218ENST00000559754 SPDYE6P0CI01 402 aa13.03□□□□□ -0.32
SPG11-218ENST00000559754 SPDYE2Q495Y8 402 aa13.03□□□□□ -0.32
SPG11-218ENST00000559754 AKT1S1Q96B36 256 aa13.03□□□□□ -0.32
SPG11-218ENST00000559754 ZNF692Q9BU19 519 aaPredicted RBP12.92□□□□□ -0.34
SPG11-218ENST00000559754 REM2Q8IYK8 340 aaPredicted RBP12.86□□□□□ -0.35
SPG11-218ENST00000559754 SSUH2Q9Y2M2 353 aa12.86□□□□□ -0.35
SPG11-218ENST00000559754 CHRDL2Q6WN34 429 aa12.78□□□□□ -0.36
SPG11-218ENST00000559754 SPDYE4A6NLX3 237 aa12.75□□□□□ -0.37
SPG11-218ENST00000559754 PABPN1Q86U42 306 aaKnown RBP eCLIP12.73□□□□□ -0.37
SPG11-218ENST00000559754 SPDYE1Q8NFV5 336 aaPredicted RBP12.72□□□□□ -0.37
SPG11-218ENST00000559754 PITPNM1O00562 1244 aa12.71□□□□□ -0.37
SPG11-218ENST00000559754 POTEHQ6S545 545 aa12.67□□□□□ -0.38
SPG11-218ENST00000559754 CLEC11AQ9Y240 323 aa12.64□□□□□ -0.39
SPG11-218ENST00000559754 FXR2P51116 673 aaKnown RBP eCLIP12.54□□□□□ -0.4
SPG11-218ENST00000559754 PIP4P2Q8N4L2 257 aa12.54□□□□□ -0.4
SPG11-218ENST00000559754 STAG3Q9UJ98 1225 aa12.54□□□□□ -0.4
SPG11-218ENST00000559754 PRR29P0C7W0 189 aa12.52□□□□□ -0.41
SPG11-218ENST00000559754 FKBP8Q14318 412 aa12.49□□□□□ -0.41
SPG11-218ENST00000559754 PROM2Q8N271 834 aa12.48□□□□□ -0.41
SPG11-218ENST00000559754 PRKAR2AP13861 404 aaKnown RBP12.41□□□□□ -0.42
SPG11-218ENST00000559754 CHADLQ6NUI6 762 aa12.3□□□□□ -0.44
SPG11-218ENST00000559754 CREBZFQ9NS37 354 aa12.24□□□□□ -0.45
SPG11-218ENST00000559754 HAX1O00165 279 aa12.23□□□□□ -0.45
SPG11-218ENST00000559754 FARP1Q9Y4F1 1045 aaPredicted RBP12.22□□□□□ -0.45
SPG11-218ENST00000559754 FBXO3Q9UK99 471 aa12.21□□□□□ -0.45
SPG11-218ENST00000559754 PLEKHG5O94827 1062 aa12.19□□□□□ -0.46
SPG11-218ENST00000559754 C19orf67A6NJJ6 358 aa12.13□□□□□ -0.47
SPG11-218ENST00000559754 MIER1Q8N108 512 aa12.13□□□□□ -0.47
SPG11-218ENST00000559754 NPM1P06748 294 aaKnown RBP eCLIP12.12□□□□□ -0.47
SPG11-218ENST00000559754 PLCD3Q8N3E9 789 aa12.1□□□□□ -0.47
SPG11-218ENST00000559754 SP7Q8TDD2 431 aaPredicted RBP12.07□□□□□ -0.48
SPG11-218ENST00000559754 MNX1P50219 401 aaPredicted RBP12.05□□□□□ -0.48
SPG11-218ENST00000559754 CD44P16070 742 aaKnown RBP12.04□□□□□ -0.48
SPG11-218ENST00000559754 ZBTB47Q9UFB7 747 aaPredicted RBP12.04□□□□□ -0.48
SPG11-218ENST00000559754 EVX2Q03828 476 aa12.01□□□□□ -0.49
SPG11-218ENST00000559754 PAK3O75914 559 aaPredicted RBP12□□□□□ -0.49
SPG11-218ENST00000559754 VASPP50552 380 aaPredicted RBP11.98□□□□□ -0.49
SPG11-218ENST00000559754 ZRANB1Q9UGI0 708 aa11.93□□□□□ -0.5
SPG11-218ENST00000559754 CLCN6P51797 869 aa11.91□□□□□ -0.5
SPG11-218ENST00000559754 ZNF579Q8NAF0 562 aaKnown RBP11.88□□□□□ -0.51
SPG11-218ENST00000559754 KLHL34Q8N239 644 aa11.86□□□□□ -0.51
SPG11-218ENST00000559754 GABBR2O75899 941 aa11.84□□□□□ -0.51
SPG11-218ENST00000559754 TSPYL2Q9H2G4 693 aaPredicted RBP11.84□□□□□ -0.51
SPG11-218ENST00000559754 NUBP1P53384 320 aa11.81□□□□□ -0.52
SPG11-218ENST00000559754 RASEFQ8IZ41 740 aa11.81□□□□□ -0.52
SPG11-218ENST00000559754 FAM212AQ96EL1 285 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms