RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 AEBP2Q6ZN18 517 aaPredicted RBP17.65■□□□□ 0.42
SPG11-211ENST00000558561 CHIC1Q5VXU3 224 aa17.28■□□□□ 0.36
SPG11-211ENST00000558561 PHF23Q9BUL5 403 aaPredicted RBP15.26■□□□□ 0.03
SPG11-211ENST00000558561 SENP3Q9H4L4 574 aaPredicted RBP14.89□□□□□ -0.03
SPG11-211ENST00000558561 PLPPR3Q6T4P5 718 aa14.05□□□□□ -0.16
SPG11-211ENST00000558561 FOXD1Q16676 465 aa13.86□□□□□ -0.19
SPG11-211ENST00000558561 PPP6R1Q9UPN7 881 aa13.46□□□□□ -0.25
SPG11-211ENST00000558561 ADRA2BP18089 450 aa13.44□□□□□ -0.26
SPG11-211ENST00000558561 PIAS4Q8N2W9 510 aaPredicted RBP13.07□□□□□ -0.32
SPG11-211ENST00000558561 MSH5O43196 834 aa12.67□□□□□ -0.38
SPG11-211ENST00000558561 PPP4R3CPQ6ZMV5 832 aa12.43□□□□□ -0.42
SPG11-211ENST00000558561 POTEDQ86YR6 584 aa12.34□□□□□ -0.43
SPG11-211ENST00000558561 KCNA4P22459 653 aa12.28□□□□□ -0.44
SPG11-211ENST00000558561 SCAF1Q9H7N4 1312 aaKnown RBP12.21□□□□□ -0.45
SPG11-211ENST00000558561 MAPK8IP2Q13387 824 aaPredicted RBP12.19□□□□□ -0.46
SPG11-211ENST00000558561 NCBP3Q53F19 620 aaKnown RBP12.09□□□□□ -0.47
SPG11-211ENST00000558561 CNKSR2Q8WXI2 1034 aa12.03□□□□□ -0.48
SPG11-211ENST00000558561 NPM3O75607 178 aaKnown RBP11.96□□□□□ -0.49
SPG11-211ENST00000558561 DMRT2Q9Y5R5 561 aa11.92□□□□□ -0.5
SPG11-211ENST00000558561 RNF216Q9NWF9 866 aaPredicted RBP11.77□□□□□ -0.53
SPG11-211ENST00000558561 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
SPG11-211ENST00000558561 SLC4A1APQ9BWU0 796 aaKnown RBP11.69□□□□□ -0.54
SPG11-211ENST00000558561 DNAJC5BQ9UF47 199 aa11.53□□□□□ -0.56
SPG11-211ENST00000558561 EHMT2Q96KQ7 1210 aa11.5□□□□□ -0.57
SPG11-211ENST00000558561 DCAF8L1A6NGE4 600 aa11.43□□□□□ -0.58
SPG11-211ENST00000558561 ZBTB22O15209 634 aa11.32□□□□□ -0.6
SPG11-211ENST00000558561 CSRNP3Q8WYN3 585 aa11.32□□□□□ -0.6
SPG11-211ENST00000558561 SLC4A2P04920 1241 aa11.29□□□□□ -0.6
SPG11-211ENST00000558561 FOXD4L1Q9NU39 408 aa11.22□□□□□ -0.61
SPG11-211ENST00000558561 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.17□□□□□ -0.62
SPG11-211ENST00000558561 MYCNP04198 464 aaPredicted RBP11.01□□□□□ -0.65
SPG11-211ENST00000558561 U3KPZ7 1027 aaPredicted RBP11.01□□□□□ -0.65
SPG11-211ENST00000558561 RNF39Q9H2S5 420 aa10.91□□□□□ -0.66
SPG11-211ENST00000558561 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.83□□□□□ -0.68
SPG11-211ENST00000558561 HNRNPUL2Q1KMD3 747 aaKnown RBP10.83□□□□□ -0.68
SPG11-211ENST00000558561 SAMD1Q6SPF0 538 aaPredicted RBP10.82□□□□□ -0.68
SPG11-211ENST00000558561 ATXN8OSP0DMR3 200 aa10.8□□□□□ -0.68
SPG11-211ENST00000558561 CACNB1Q02641 598 aaPredicted RBP10.79□□□□□ -0.68
SPG11-211ENST00000558561 ATF5Q9Y2D1 282 aaPredicted RBP10.79□□□□□ -0.68
SPG11-211ENST00000558561 C1QBPQ07021 282 aaKnown RBP10.75□□□□□ -0.69
SPG11-211ENST00000558561 SPINK5Q9NQ38 1064 aaPredicted RBP10.7□□□□□ -0.7
SPG11-211ENST00000558561 APLP2Q06481 763 aa10.68□□□□□ -0.7
SPG11-211ENST00000558561 CAPN15O75808 1086 aa10.62□□□□□ -0.71
SPG11-211ENST00000558561 TRHP20396 242 aaPredicted RBP10.61□□□□□ -0.71
SPG11-211ENST00000558561 ZNF219Q9P2Y4 722 aaPredicted RBP10.57□□□□□ -0.72
SPG11-211ENST00000558561 POLA2Q14181 598 aa10.47□□□□□ -0.73
SPG11-211ENST00000558561 ABCB7O75027 752 aa10.46□□□□□ -0.73
SPG11-211ENST00000558561 DSG3P32926 999 aa10.42□□□□□ -0.74
SPG11-211ENST00000558561 MKRN4PQ13434 485 aaPredicted RBP10.31□□□□□ -0.76
SPG11-211ENST00000558561 FBLN2P98095 1184 aa10.25□□□□□ -0.77
SPG11-211ENST00000558561 NISCHQ9Y2I1 1504 aa10.24□□□□□ -0.77
SPG11-211ENST00000558561 ZBTB12Q9Y330 459 aaPredicted RBP10.22□□□□□ -0.77
SPG11-211ENST00000558561 FKBP8Q14318 412 aa10.21□□□□□ -0.77
SPG11-211ENST00000558561 SPDYE4A6NLX3 237 aa10.1□□□□□ -0.79
SPG11-211ENST00000558561 OSCARQ8IYS5 282 aa10.09□□□□□ -0.79
SPG11-211ENST00000558561 ZNF692Q9BU19 519 aaPredicted RBP9.99□□□□□ -0.81
SPG11-211ENST00000558561 SPDYE2BA6NHP3 402 aa9.98□□□□□ -0.81
SPG11-211ENST00000558561 SPDYE6P0CI01 402 aa9.98□□□□□ -0.81
SPG11-211ENST00000558561 SPDYE2Q495Y8 402 aa9.98□□□□□ -0.81
SPG11-211ENST00000558561 SSUH2Q9Y2M2 353 aa9.93□□□□□ -0.82
SPG11-211ENST00000558561 PROM2Q8N271 834 aa9.92□□□□□ -0.82
SPG11-211ENST00000558561 PABPN1Q86U42 306 aaKnown RBP eCLIP9.87□□□□□ -0.83
SPG11-211ENST00000558561 RBM42Q9BTD8 480 aaKnown RBP9.87□□□□□ -0.83
SPG11-211ENST00000558561 AKT1S1Q96B36 256 aa9.8□□□□□ -0.84
SPG11-211ENST00000558561 FBXO3Q9UK99 471 aa9.77□□□□□ -0.85
SPG11-211ENST00000558561 REM2Q8IYK8 340 aaPredicted RBP9.74□□□□□ -0.85
SPG11-211ENST00000558561 VASPP50552 380 aaPredicted RBP9.67□□□□□ -0.86
SPG11-211ENST00000558561 SPDYE1Q8NFV5 336 aaPredicted RBP9.67□□□□□ -0.86
SPG11-211ENST00000558561 STAG3Q9UJ98 1225 aa9.67□□□□□ -0.86
SPG11-211ENST00000558561 POTEHQ6S545 545 aa9.66□□□□□ -0.86
SPG11-211ENST00000558561 CLEC11AQ9Y240 323 aa9.65□□□□□ -0.86
SPG11-211ENST00000558561 PITPNM1O00562 1244 aa9.63□□□□□ -0.87
SPG11-211ENST00000558561 MIER1Q8N108 512 aa9.58□□□□□ -0.88
SPG11-211ENST00000558561 PRR29P0C7W0 189 aa9.57□□□□□ -0.88
SPG11-211ENST00000558561 IFNLR1Q8IU57 520 aaPredicted RBP9.57□□□□□ -0.88
SPG11-211ENST00000558561 PLCD3Q8N3E9 789 aa9.56□□□□□ -0.88
SPG11-211ENST00000558561 KLHL34Q8N239 644 aa9.5□□□□□ -0.89
SPG11-211ENST00000558561 RTN4Q9NQC3 1192 aaKnown RBP9.48□□□□□ -0.89
SPG11-211ENST00000558561 CREBZFQ9NS37 354 aa9.48□□□□□ -0.89
SPG11-211ENST00000558561 CHRDL2Q6WN34 429 aa9.47□□□□□ -0.89
SPG11-211ENST00000558561 PLEKHG5O94827 1062 aa9.45□□□□□ -0.9
SPG11-211ENST00000558561 AMER1Q5JTC6 1135 aaPredicted RBP9.43□□□□□ -0.9
SPG11-211ENST00000558561 CHADLQ6NUI6 762 aa9.43□□□□□ -0.9
SPG11-211ENST00000558561 SPOCK2Q92563 424 aa9.42□□□□□ -0.9
SPG11-211ENST00000558561 FXR2P51116 673 aaKnown RBP eCLIP9.41□□□□□ -0.9
SPG11-211ENST00000558561 MNX1P50219 401 aaPredicted RBP9.4□□□□□ -0.9
SPG11-211ENST00000558561 PIP4P2Q8N4L2 257 aa9.39□□□□□ -0.91
SPG11-211ENST00000558561 ZBTB47Q9UFB7 747 aaPredicted RBP9.39□□□□□ -0.91
SPG11-211ENST00000558561 PRKAR2AP13861 404 aaKnown RBP9.38□□□□□ -0.91
SPG11-211ENST00000558561 NUBP1P53384 320 aa9.32□□□□□ -0.92
SPG11-211ENST00000558561 FARP1Q9Y4F1 1045 aaPredicted RBP9.32□□□□□ -0.92
SPG11-211ENST00000558561 PKD2Q13563 968 aa9.29□□□□□ -0.92
SPG11-211ENST00000558561 NPM1P06748 294 aaKnown RBP eCLIP9.28□□□□□ -0.92
SPG11-211ENST00000558561 RASEFQ8IZ41 740 aa9.27□□□□□ -0.93
SPG11-211ENST00000558561 CIZ1Q9ULV3 898 aaPredicted RBP9.27□□□□□ -0.93
SPG11-211ENST00000558561 DCAF8Q5TAQ9 597 aa9.25□□□□□ -0.93
SPG11-211ENST00000558561 ECM2O94769 699 aaPredicted RBP9.2□□□□□ -0.94
SPG11-211ENST00000558561 GSE1Q14687 1217 aa9.2□□□□□ -0.94
SPG11-211ENST00000558561 FAM212AQ96EL1 285 aa9.2□□□□□ -0.94
SPG11-211ENST00000558561 TSPYL2Q9H2G4 693 aaPredicted RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms