RNA–Protein interactions for RNA: ENST00000558532.1

HERC1-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-203ENST00000558532 AEBP2Q6ZN18 517 aaPredicted RBP16.3■□□□□ 0.2
HERC1-203ENST00000558532 CHIC1Q5VXU3 224 aa15.82■□□□□ 0.12
HERC1-203ENST00000558532 PHF23Q9BUL5 403 aaPredicted RBP13.93□□□□□ -0.18
HERC1-203ENST00000558532 SENP3Q9H4L4 574 aaPredicted RBP13.78□□□□□ -0.2
HERC1-203ENST00000558532 FOXD1Q16676 465 aa12.83□□□□□ -0.36
HERC1-203ENST00000558532 PLPPR3Q6T4P5 718 aa12.79□□□□□ -0.36
HERC1-203ENST00000558532 PPP6R1Q9UPN7 881 aa12.31□□□□□ -0.44
HERC1-203ENST00000558532 ADRA2BP18089 450 aa12.27□□□□□ -0.45
HERC1-203ENST00000558532 PIAS4Q8N2W9 510 aaPredicted RBP12.06□□□□□ -0.48
HERC1-203ENST00000558532 MSH5O43196 834 aa11.81□□□□□ -0.52
HERC1-203ENST00000558532 PPP4R3CPQ6ZMV5 832 aa11.27□□□□□ -0.61
HERC1-203ENST00000558532 MAPK8IP2Q13387 824 aaPredicted RBP11.16□□□□□ -0.62
HERC1-203ENST00000558532 SCAF1Q9H7N4 1312 aaKnown RBP11.15□□□□□ -0.62
HERC1-203ENST00000558532 DMRT2Q9Y5R5 561 aa11.01□□□□□ -0.65
HERC1-203ENST00000558532 KCNA4P22459 653 aa10.96□□□□□ -0.65
HERC1-203ENST00000558532 CNKSR2Q8WXI2 1034 aa10.96□□□□□ -0.65
HERC1-203ENST00000558532 POTEDQ86YR6 584 aa10.91□□□□□ -0.66
HERC1-203ENST00000558532 NCBP3Q53F19 620 aaKnown RBP10.9□□□□□ -0.66
HERC1-203ENST00000558532 NPM3O75607 178 aaKnown RBP10.82□□□□□ -0.68
HERC1-203ENST00000558532 RNF216Q9NWF9 866 aaPredicted RBP10.77□□□□□ -0.69
HERC1-203ENST00000558532 HOXD11P31277 338 aaPredicted RBP10.76□□□□□ -0.69
HERC1-203ENST00000558532 DNAJC5BQ9UF47 199 aa10.52□□□□□ -0.73
HERC1-203ENST00000558532 DCAF8L1A6NGE4 600 aa10.48□□□□□ -0.73
HERC1-203ENST00000558532 SLC4A1APQ9BWU0 796 aaKnown RBP10.39□□□□□ -0.75
HERC1-203ENST00000558532 SLC4A2P04920 1241 aa10.24□□□□□ -0.77
HERC1-203ENST00000558532 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.2□□□□□ -0.78
HERC1-203ENST00000558532 RNF39Q9H2S5 420 aa10.15□□□□□ -0.78
HERC1-203ENST00000558532 ZBTB22O15209 634 aa10.12□□□□□ -0.79
HERC1-203ENST00000558532 U3KPZ7 1027 aaPredicted RBP10.09□□□□□ -0.79
HERC1-203ENST00000558532 FOXD4L1Q9NU39 408 aa10.08□□□□□ -0.8
HERC1-203ENST00000558532 EHMT2Q96KQ7 1210 aa10.03□□□□□ -0.8
HERC1-203ENST00000558532 C1QBPQ07021 282 aaKnown RBP9.99□□□□□ -0.81
HERC1-203ENST00000558532 MYCNP04198 464 aaPredicted RBP9.97□□□□□ -0.81
HERC1-203ENST00000558532 CSRNP3Q8WYN3 585 aa9.97□□□□□ -0.81
HERC1-203ENST00000558532 CACNB1Q02641 598 aaPredicted RBP9.89□□□□□ -0.83
HERC1-203ENST00000558532 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.87□□□□□ -0.83
HERC1-203ENST00000558532 HNRNPUL2Q1KMD3 747 aaKnown RBP9.87□□□□□ -0.83
HERC1-203ENST00000558532 SAMD1Q6SPF0 538 aaPredicted RBP9.84□□□□□ -0.83
HERC1-203ENST00000558532 SPINK5Q9NQ38 1064 aaPredicted RBP9.83□□□□□ -0.84
HERC1-203ENST00000558532 APLP2Q06481 763 aa9.76□□□□□ -0.85
HERC1-203ENST00000558532 ATF5Q9Y2D1 282 aaPredicted RBP9.76□□□□□ -0.85
HERC1-203ENST00000558532 CAPN15O75808 1086 aa9.74□□□□□ -0.85
HERC1-203ENST00000558532 ATXN8OSP0DMR3 200 aa9.72□□□□□ -0.85
HERC1-203ENST00000558532 TRHP20396 242 aaPredicted RBP9.68□□□□□ -0.86
HERC1-203ENST00000558532 ZNF219Q9P2Y4 722 aaPredicted RBP9.68□□□□□ -0.86
HERC1-203ENST00000558532 DSG3P32926 999 aa9.63□□□□□ -0.87
HERC1-203ENST00000558532 ABCB7O75027 752 aa9.58□□□□□ -0.88
HERC1-203ENST00000558532 POLA2Q14181 598 aa9.51□□□□□ -0.89
HERC1-203ENST00000558532 ZBTB12Q9Y330 459 aaPredicted RBP9.34□□□□□ -0.91
HERC1-203ENST00000558532 MKRN4PQ13434 485 aaPredicted RBP9.33□□□□□ -0.92
HERC1-203ENST00000558532 FBLN2P98095 1184 aa9.27□□□□□ -0.93
HERC1-203ENST00000558532 OSCARQ8IYS5 282 aa9.23□□□□□ -0.93
HERC1-203ENST00000558532 RBM42Q9BTD8 480 aaKnown RBP9.13□□□□□ -0.95
HERC1-203ENST00000558532 SPDYE2BA6NHP3 402 aa9.1□□□□□ -0.95
HERC1-203ENST00000558532 SPDYE6P0CI01 402 aa9.1□□□□□ -0.95
HERC1-203ENST00000558532 SPDYE2Q495Y8 402 aa9.1□□□□□ -0.95
HERC1-203ENST00000558532 SSUH2Q9Y2M2 353 aa9.06□□□□□ -0.96
HERC1-203ENST00000558532 ZNF692Q9BU19 519 aaPredicted RBP9.04□□□□□ -0.96
HERC1-203ENST00000558532 SPDYE4A6NLX3 237 aa9.03□□□□□ -0.96
HERC1-203ENST00000558532 AKT1S1Q96B36 256 aa9.03□□□□□ -0.96
HERC1-203ENST00000558532 FKBP8Q14318 412 aa8.99□□□□□ -0.97
HERC1-203ENST00000558532 REM2Q8IYK8 340 aaPredicted RBP8.95□□□□□ -0.98
HERC1-203ENST00000558532 PABPN1Q86U42 306 aaKnown RBP eCLIP8.94□□□□□ -0.98
HERC1-203ENST00000558532 PROM2Q8N271 834 aa8.94□□□□□ -0.98
HERC1-203ENST00000558532 PITPNM1O00562 1244 aa8.87□□□□□ -0.99
HERC1-203ENST00000558532 SPDYE1Q8NFV5 336 aaPredicted RBP8.83□□□□□ -1
HERC1-203ENST00000558532 CHRDL2Q6WN34 429 aa8.81□□□□□ -1
HERC1-203ENST00000558532 CLEC11AQ9Y240 323 aa8.79□□□□□ -1
HERC1-203ENST00000558532 STAG3Q9UJ98 1225 aa8.74□□□□□ -1.01
HERC1-203ENST00000558532 FXR2P51116 673 aaKnown RBP eCLIP8.71□□□□□ -1.022e-10■■■□□ 16.1
HERC1-203ENST00000558532 PRR29P0C7W0 189 aa8.7□□□□□ -1.02
HERC1-203ENST00000558532 PIP4P2Q8N4L2 257 aa8.7□□□□□ -1.02
HERC1-203ENST00000558532 FBXO3Q9UK99 471 aa8.65□□□□□ -1.02
HERC1-203ENST00000558532 CHADLQ6NUI6 762 aa8.63□□□□□ -1.03
HERC1-203ENST00000558532 CREBZFQ9NS37 354 aa8.63□□□□□ -1.03
HERC1-203ENST00000558532 PRKAR2AP13861 404 aaKnown RBP8.62□□□□□ -1.03
HERC1-203ENST00000558532 POTEHQ6S545 545 aa8.61□□□□□ -1.03
HERC1-203ENST00000558532 VASPP50552 380 aaPredicted RBP8.57□□□□□ -1.04
HERC1-203ENST00000558532 MNX1P50219 401 aaPredicted RBP8.56□□□□□ -1.04
HERC1-203ENST00000558532 MIER1Q8N108 512 aa8.54□□□□□ -1.04
HERC1-203ENST00000558532 PLCD3Q8N3E9 789 aa8.52□□□□□ -1.05
HERC1-203ENST00000558532 FARP1Q9Y4F1 1045 aaPredicted RBP8.52□□□□□ -1.05
HERC1-203ENST00000558532 IFNLR1Q8IU57 520 aaPredicted RBP8.48□□□□□ -1.05
HERC1-203ENST00000558532 PLEKHG5O94827 1062 aa8.47□□□□□ -1.05
HERC1-203ENST00000558532 C19orf67A6NJJ6 358 aa8.42□□□□□ -1.06
HERC1-203ENST00000558532 NPM1P06748 294 aaKnown RBP eCLIP8.42□□□□□ -1.06
HERC1-203ENST00000558532 ZBTB47Q9UFB7 747 aaPredicted RBP8.42□□□□□ -1.06
HERC1-203ENST00000558532 HAX1O00165 279 aa8.39□□□□□ -1.07
HERC1-203ENST00000558532 NUBP1P53384 320 aa8.39□□□□□ -1.07
HERC1-203ENST00000558532 KLHL34Q8N239 644 aa8.39□□□□□ -1.07
HERC1-203ENST00000558532 EVX2Q03828 476 aa8.38□□□□□ -1.07
HERC1-203ENST00000558532 CD44P16070 742 aaKnown RBP8.37□□□□□ -1.07
HERC1-203ENST00000558532 RASEFQ8IZ41 740 aa8.37□□□□□ -1.07
HERC1-203ENST00000558532 SPOCK2Q92563 424 aa8.34□□□□□ -1.07
HERC1-203ENST00000558532 TSPYL2Q9H2G4 693 aaPredicted RBP8.3□□□□□ -1.08
HERC1-203ENST00000558532 ZRANB1Q9UGI0 708 aa8.3□□□□□ -1.08
HERC1-203ENST00000558532 CCDC61Q9Y6R9 512 aa8.29□□□□□ -1.08
HERC1-203ENST00000558532 PAK3O75914 559 aaPredicted RBP8.28□□□□□ -1.08
HERC1-203ENST00000558532 ZNF579Q8NAF0 562 aaKnown RBP8.28□□□□□ -1.08
HERC1-203ENST00000558532 FAM212AQ96EL1 285 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 223 ms