RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 AEBP2Q6ZN18 517 aaPredicted RBP30.16■■■□□ 2.42
RTF1-204ENST00000558117 CHIC1Q5VXU3 224 aa29.44■■■□□ 2.3
RTF1-204ENST00000558117 PHF23Q9BUL5 403 aaPredicted RBP25.8■■□□□ 1.72
RTF1-204ENST00000558117 SENP3Q9H4L4 574 aaPredicted RBP25.72■■□□□ 1.71
RTF1-204ENST00000558117 PLPPR3Q6T4P5 718 aa23.93■■□□□ 1.42
RTF1-204ENST00000558117 FOXD1Q16676 465 aa23.8■■□□□ 1.4
RTF1-204ENST00000558117 ADRA2BP18089 450 aa22.81■■□□□ 1.24
RTF1-204ENST00000558117 PPP6R1Q9UPN7 881 aa22.79■■□□□ 1.24
RTF1-204ENST00000558117 PIAS4Q8N2W9 510 aaPredicted RBP22.51■■□□□ 1.19
RTF1-204ENST00000558117 MSH5O43196 834 aa22.08■■□□□ 1.13
RTF1-204ENST00000558117 PPP4R3CPQ6ZMV5 832 aa21.04■□□□□ 0.96
RTF1-204ENST00000558117 SCAF1Q9H7N4 1312 aaKnown RBP21■□□□□ 0.95
RTF1-204ENST00000558117 MAPK8IP2Q13387 824 aaPredicted RBP20.7■□□□□ 0.9
RTF1-204ENST00000558117 NCBP3Q53F19 620 aaKnown RBP20.54■□□□□ 0.88
RTF1-204ENST00000558117 CNKSR2Q8WXI2 1034 aa20.49■□□□□ 0.87
RTF1-204ENST00000558117 DMRT2Q9Y5R5 561 aa20.48■□□□□ 0.87
RTF1-204ENST00000558117 KCNA4P22459 653 aa20.42■□□□□ 0.86
RTF1-204ENST00000558117 POTEDQ86YR6 584 aa20.19■□□□□ 0.82
RTF1-204ENST00000558117 NPM3O75607 178 aaKnown RBP20.14■□□□□ 0.81
RTF1-204ENST00000558117 RNF216Q9NWF9 866 aaPredicted RBP20.1■□□□□ 0.81
RTF1-204ENST00000558117 HOXD11P31277 338 aaPredicted RBP20■□□□□ 0.79
RTF1-204ENST00000558117 DCAF8L1A6NGE4 600 aa19.7■□□□□ 0.74
RTF1-204ENST00000558117 DNAJC5BQ9UF47 199 aa19.52■□□□□ 0.72
RTF1-204ENST00000558117 SLC4A1APQ9BWU0 796 aaKnown RBP19.5■□□□□ 0.71
RTF1-204ENST00000558117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.16■□□□□ 0.663e-10■■■■□ 26.4
RTF1-204ENST00000558117 SLC4A2P04920 1241 aa18.99■□□□□ 0.63
RTF1-204ENST00000558117 FOXD4L1Q9NU39 408 aa18.89■□□□□ 0.61
RTF1-204ENST00000558117 EHMT2Q96KQ7 1210 aa18.86■□□□□ 0.61
RTF1-204ENST00000558117 RNF39Q9H2S5 420 aa18.84■□□□□ 0.61
RTF1-204ENST00000558117 U3KPZ7 1027 aaPredicted RBP18.76■□□□□ 0.59
RTF1-204ENST00000558117 ZBTB22O15209 634 aa18.74■□□□□ 0.59
RTF1-204ENST00000558117 MYCNP04198 464 aaPredicted RBP18.68■□□□□ 0.58
RTF1-204ENST00000558117 C1QBPQ07021 282 aaKnown RBP18.66■□□□□ 0.58
RTF1-204ENST00000558117 CSRNP3Q8WYN3 585 aa18.62■□□□□ 0.57
RTF1-204ENST00000558117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.6■□□□□ 0.57
RTF1-204ENST00000558117 HNRNPUL2Q1KMD3 747 aaKnown RBP18.6■□□□□ 0.57
RTF1-204ENST00000558117 SAMD1Q6SPF0 538 aaPredicted RBP18.51■□□□□ 0.55
RTF1-204ENST00000558117 CACNB1Q02641 598 aaPredicted RBP18.49■□□□□ 0.55
RTF1-204ENST00000558117 APLP2Q06481 763 aa18.48■□□□□ 0.55
RTF1-204ENST00000558117 CAPN15O75808 1086 aa18.27■□□□□ 0.52
RTF1-204ENST00000558117 SPINK5Q9NQ38 1064 aaPredicted RBP18.25■□□□□ 0.51
RTF1-204ENST00000558117 ATXN8OSP0DMR3 200 aa18.22■□□□□ 0.51
RTF1-204ENST00000558117 ZNF219Q9P2Y4 722 aaPredicted RBP18.17■□□□□ 0.5
RTF1-204ENST00000558117 TRHP20396 242 aaPredicted RBP18.16■□□□□ 0.5
RTF1-204ENST00000558117 ATF5Q9Y2D1 282 aaPredicted RBP18.08■□□□□ 0.48
RTF1-204ENST00000558117 DSG3P32926 999 aa17.91■□□□□ 0.46
RTF1-204ENST00000558117 ABCB7O75027 752 aa17.88■□□□□ 0.45
RTF1-204ENST00000558117 POLA2Q14181 598 aa17.79■□□□□ 0.44
RTF1-204ENST00000558117 ZBTB12Q9Y330 459 aaPredicted RBP17.58■□□□□ 0.4
RTF1-204ENST00000558117 FBLN2P98095 1184 aa17.48■□□□□ 0.39
RTF1-204ENST00000558117 MKRN4PQ13434 485 aaPredicted RBP17.29■□□□□ 0.36
RTF1-204ENST00000558117 OSCARQ8IYS5 282 aa17.22■□□□□ 0.35
RTF1-204ENST00000558117 RBM42Q9BTD8 480 aaKnown RBP17.17■□□□□ 0.34
RTF1-204ENST00000558117 SPDYE2BA6NHP3 402 aa17.06■□□□□ 0.32
RTF1-204ENST00000558117 SPDYE6P0CI01 402 aa17.06■□□□□ 0.32
RTF1-204ENST00000558117 SPDYE2Q495Y8 402 aa17.06■□□□□ 0.32
RTF1-204ENST00000558117 ZNF692Q9BU19 519 aaPredicted RBP16.98■□□□□ 0.31
RTF1-204ENST00000558117 SPDYE4A6NLX3 237 aa16.95■□□□□ 0.3
RTF1-204ENST00000558117 FKBP8Q14318 412 aa16.9■□□□□ 0.3
RTF1-204ENST00000558117 AKT1S1Q96B36 256 aa16.89■□□□□ 0.29
RTF1-204ENST00000558117 SSUH2Q9Y2M2 353 aa16.86■□□□□ 0.29
RTF1-204ENST00000558117 PABPN1Q86U42 306 aaKnown RBP eCLIP16.74■□□□□ 0.27
RTF1-204ENST00000558117 REM2Q8IYK8 340 aaPredicted RBP16.69■□□□□ 0.26
RTF1-204ENST00000558117 PROM2Q8N271 834 aa16.58■□□□□ 0.24
RTF1-204ENST00000558117 SPDYE1Q8NFV5 336 aaPredicted RBP16.58■□□□□ 0.24
RTF1-204ENST00000558117 CLEC11AQ9Y240 323 aa16.54■□□□□ 0.24
RTF1-204ENST00000558117 PITPNM1O00562 1244 aa16.51■□□□□ 0.23
RTF1-204ENST00000558117 STAG3Q9UJ98 1225 aa16.49■□□□□ 0.23
RTF1-204ENST00000558117 CHRDL2Q6WN34 429 aa16.43■□□□□ 0.22
RTF1-204ENST00000558117 PRR29P0C7W0 189 aa16.37■□□□□ 0.21
RTF1-204ENST00000558117 FBXO3Q9UK99 471 aa16.37■□□□□ 0.21
RTF1-204ENST00000558117 FXR2P51116 673 aaKnown RBP eCLIP16.19■□□□□ 0.18
RTF1-204ENST00000558117 PIP4P2Q8N4L2 257 aa16.18■□□□□ 0.18
RTF1-204ENST00000558117 PLEKHG5O94827 1062 aa16.14■□□□□ 0.17
RTF1-204ENST00000558117 PRKAR2AP13861 404 aaKnown RBP16.13■□□□□ 0.17
RTF1-204ENST00000558117 MIER1Q8N108 512 aa16.11■□□□□ 0.17
RTF1-204ENST00000558117 PLCD3Q8N3E9 789 aa16.11■□□□□ 0.17
RTF1-204ENST00000558117 VASPP50552 380 aaPredicted RBP16.09■□□□□ 0.17
RTF1-204ENST00000558117 CHADLQ6NUI6 762 aa16.09■□□□□ 0.17
RTF1-204ENST00000558117 CREBZFQ9NS37 354 aa16.06■□□□□ 0.16
RTF1-204ENST00000558117 POTEHQ6S545 545 aa16.01■□□□□ 0.15
RTF1-204ENST00000558117 ZBTB47Q9UFB7 747 aaPredicted RBP15.96■□□□□ 0.15
RTF1-204ENST00000558117 FARP1Q9Y4F1 1045 aaPredicted RBP15.92■□□□□ 0.14
RTF1-204ENST00000558117 KLHL34Q8N239 644 aa15.9■□□□□ 0.14
RTF1-204ENST00000558117 NPM1P06748 294 aaKnown RBP eCLIP15.89■□□□□ 0.13
RTF1-204ENST00000558117 MNX1P50219 401 aaPredicted RBP15.83■□□□□ 0.12
RTF1-204ENST00000558117 IFNLR1Q8IU57 520 aaPredicted RBP15.81■□□□□ 0.12
RTF1-204ENST00000558117 HAX1O00165 279 aa15.74■□□□□ 0.11
RTF1-204ENST00000558117 SPOCK2Q92563 424 aa15.72■□□□□ 0.11
RTF1-204ENST00000558117 PAK3O75914 559 aaPredicted RBP15.69■□□□□ 0.1
RTF1-204ENST00000558117 CD44P16070 742 aaKnown RBP15.67■□□□□ 0.1
RTF1-204ENST00000558117 C19orf67A6NJJ6 358 aa15.65■□□□□ 0.1
RTF1-204ENST00000558117 NUBP1P53384 320 aa15.63■□□□□ 0.09
RTF1-204ENST00000558117 FAM212AQ96EL1 285 aa15.62■□□□□ 0.09
RTF1-204ENST00000558117 RASEFQ8IZ41 740 aa15.6■□□□□ 0.09
RTF1-204ENST00000558117 TSPYL2Q9H2G4 693 aaPredicted RBP15.59■□□□□ 0.09
RTF1-204ENST00000558117 ZRANB1Q9UGI0 708 aa15.57■□□□□ 0.08
RTF1-204ENST00000558117 DCAF8Q5TAQ9 597 aa15.55■□□□□ 0.08
RTF1-204ENST00000558117 GSE1Q14687 1217 aa15.53■□□□□ 0.08
RTF1-204ENST00000558117 CIZ1Q9ULV3 898 aaPredicted RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 281.3 ms