RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 AEBP2Q6ZN18 517 aaPredicted RBP19.06■□□□□ 0.64
SPG11-206ENST00000558093 CHIC1Q5VXU3 224 aa18.6■□□□□ 0.57
SPG11-206ENST00000558093 PHF23Q9BUL5 403 aaPredicted RBP16.31■□□□□ 0.2
SPG11-206ENST00000558093 SENP3Q9H4L4 574 aaPredicted RBP16.27■□□□□ 0.2
SPG11-206ENST00000558093 PLPPR3Q6T4P5 718 aa15.12■□□□□ 0.01
SPG11-206ENST00000558093 FOXD1Q16676 465 aa15.05■□□□□ -0
SPG11-206ENST00000558093 ADRA2BP18089 450 aa14.43□□□□□ -0.1
SPG11-206ENST00000558093 PPP6R1Q9UPN7 881 aa14.41□□□□□ -0.1
SPG11-206ENST00000558093 PIAS4Q8N2W9 510 aaPredicted RBP14.26□□□□□ -0.13
SPG11-206ENST00000558093 MSH5O43196 834 aa13.97□□□□□ -0.17
SPG11-206ENST00000558093 PPP4R3CPQ6ZMV5 832 aa13.3□□□□□ -0.28
SPG11-206ENST00000558093 SCAF1Q9H7N4 1312 aaKnown RBP13.27□□□□□ -0.29
SPG11-206ENST00000558093 MAPK8IP2Q13387 824 aaPredicted RBP13.09□□□□□ -0.31
SPG11-206ENST00000558093 NCBP3Q53F19 620 aaKnown RBP12.98□□□□□ -0.33
SPG11-206ENST00000558093 CNKSR2Q8WXI2 1034 aa12.95□□□□□ -0.34
SPG11-206ENST00000558093 DMRT2Q9Y5R5 561 aa12.94□□□□□ -0.34
SPG11-206ENST00000558093 KCNA4P22459 653 aa12.92□□□□□ -0.34
SPG11-206ENST00000558093 POTEDQ86YR6 584 aa12.78□□□□□ -0.36
SPG11-206ENST00000558093 NPM3O75607 178 aaKnown RBP12.73□□□□□ -0.37
SPG11-206ENST00000558093 RNF216Q9NWF9 866 aaPredicted RBP12.69□□□□□ -0.38
SPG11-206ENST00000558093 HOXD11P31277 338 aaPredicted RBP12.63□□□□□ -0.39
SPG11-206ENST00000558093 DCAF8L1A6NGE4 600 aa12.5□□□□□ -0.41
SPG11-206ENST00000558093 SLC4A1APQ9BWU0 796 aaKnown RBP12.33□□□□□ -0.44
SPG11-206ENST00000558093 DNAJC5BQ9UF47 199 aa12.28□□□□□ -0.44
SPG11-206ENST00000558093 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.13□□□□□ -0.47
SPG11-206ENST00000558093 SLC4A2P04920 1241 aa12□□□□□ -0.49
SPG11-206ENST00000558093 EHMT2Q96KQ7 1210 aa11.94□□□□□ -0.5
SPG11-206ENST00000558093 FOXD4L1Q9NU39 408 aa11.94□□□□□ -0.5
SPG11-206ENST00000558093 RNF39Q9H2S5 420 aa11.92□□□□□ -0.5
SPG11-206ENST00000558093 U3KPZ7 1027 aaPredicted RBP11.86□□□□□ -0.51
SPG11-206ENST00000558093 ZBTB22O15209 634 aa11.85□□□□□ -0.51
SPG11-206ENST00000558093 MYCNP04198 464 aaPredicted RBP11.81□□□□□ -0.52
SPG11-206ENST00000558093 C1QBPQ07021 282 aaKnown RBP11.8□□□□□ -0.52
SPG11-206ENST00000558093 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.76□□□□□ -0.53
SPG11-206ENST00000558093 HNRNPUL2Q1KMD3 747 aaKnown RBP11.76□□□□□ -0.53
SPG11-206ENST00000558093 CSRNP3Q8WYN3 585 aa11.74□□□□□ -0.53
SPG11-206ENST00000558093 CACNB1Q02641 598 aaPredicted RBP11.72□□□□□ -0.53
SPG11-206ENST00000558093 SAMD1Q6SPF0 538 aaPredicted RBP11.7□□□□□ -0.54
SPG11-206ENST00000558093 APLP2Q06481 763 aa11.68□□□□□ -0.54
SPG11-206ENST00000558093 CAPN15O75808 1086 aa11.58□□□□□ -0.56
SPG11-206ENST00000558093 SPINK5Q9NQ38 1064 aaPredicted RBP11.56□□□□□ -0.56
SPG11-206ENST00000558093 ATXN8OSP0DMR3 200 aa11.5□□□□□ -0.57
SPG11-206ENST00000558093 TRHP20396 242 aaPredicted RBP11.5□□□□□ -0.57
SPG11-206ENST00000558093 ZNF219Q9P2Y4 722 aaPredicted RBP11.49□□□□□ -0.57
SPG11-206ENST00000558093 ATF5Q9Y2D1 282 aaPredicted RBP11.43□□□□□ -0.58
SPG11-206ENST00000558093 ABCB7O75027 752 aa11.34□□□□□ -0.59
SPG11-206ENST00000558093 DSG3P32926 999 aa11.32□□□□□ -0.6
SPG11-206ENST00000558093 POLA2Q14181 598 aa11.26□□□□□ -0.61
SPG11-206ENST00000558093 ZBTB12Q9Y330 459 aaPredicted RBP11.12□□□□□ -0.63
SPG11-206ENST00000558093 FBLN2P98095 1184 aa11.06□□□□□ -0.64
SPG11-206ENST00000558093 MKRN4PQ13434 485 aaPredicted RBP10.92□□□□□ -0.66
SPG11-206ENST00000558093 OSCARQ8IYS5 282 aa10.91□□□□□ -0.66
SPG11-206ENST00000558093 RBM42Q9BTD8 480 aaKnown RBP10.87□□□□□ -0.67
SPG11-206ENST00000558093 SPDYE2BA6NHP3 402 aa10.79□□□□□ -0.68
SPG11-206ENST00000558093 SPDYE6P0CI01 402 aa10.79□□□□□ -0.68
SPG11-206ENST00000558093 SPDYE2Q495Y8 402 aa10.79□□□□□ -0.68
SPG11-206ENST00000558093 ZNF692Q9BU19 519 aaPredicted RBP10.74□□□□□ -0.69
SPG11-206ENST00000558093 SPDYE4A6NLX3 237 aa10.72□□□□□ -0.69
SPG11-206ENST00000558093 FKBP8Q14318 412 aa10.69□□□□□ -0.7
SPG11-206ENST00000558093 AKT1S1Q96B36 256 aa10.68□□□□□ -0.7
SPG11-206ENST00000558093 SSUH2Q9Y2M2 353 aa10.65□□□□□ -0.7
SPG11-206ENST00000558093 PABPN1Q86U42 306 aaKnown RBP eCLIP10.59□□□□□ -0.71
SPG11-206ENST00000558093 REM2Q8IYK8 340 aaPredicted RBP10.56□□□□□ -0.72
SPG11-206ENST00000558093 SPDYE1Q8NFV5 336 aaPredicted RBP10.5□□□□□ -0.73
SPG11-206ENST00000558093 CLEC11AQ9Y240 323 aa10.48□□□□□ -0.73
SPG11-206ENST00000558093 PITPNM1O00562 1244 aa10.45□□□□□ -0.74
SPG11-206ENST00000558093 PROM2Q8N271 834 aa10.45□□□□□ -0.74
SPG11-206ENST00000558093 STAG3Q9UJ98 1225 aa10.42□□□□□ -0.74
SPG11-206ENST00000558093 CHRDL2Q6WN34 429 aa10.41□□□□□ -0.74
SPG11-206ENST00000558093 PRR29P0C7W0 189 aa10.35□□□□□ -0.75
SPG11-206ENST00000558093 FBXO3Q9UK99 471 aa10.34□□□□□ -0.75
SPG11-206ENST00000558093 PIP4P2Q8N4L2 257 aa10.24□□□□□ -0.77
SPG11-206ENST00000558093 FXR2P51116 673 aaKnown RBP eCLIP10.23□□□□□ -0.77
SPG11-206ENST00000558093 PLEKHG5O94827 1062 aa10.22□□□□□ -0.77
SPG11-206ENST00000558093 PRKAR2AP13861 404 aaKnown RBP10.21□□□□□ -0.77
SPG11-206ENST00000558093 PLCD3Q8N3E9 789 aa10.21□□□□□ -0.77
SPG11-206ENST00000558093 CHADLQ6NUI6 762 aa10.19□□□□□ -0.78
SPG11-206ENST00000558093 MIER1Q8N108 512 aa10.19□□□□□ -0.78
SPG11-206ENST00000558093 VASPP50552 380 aaPredicted RBP10.18□□□□□ -0.78
SPG11-206ENST00000558093 CREBZFQ9NS37 354 aa10.14□□□□□ -0.79
SPG11-206ENST00000558093 POTEHQ6S545 545 aa10.13□□□□□ -0.79
SPG11-206ENST00000558093 ZBTB47Q9UFB7 747 aaPredicted RBP10.09□□□□□ -0.79
SPG11-206ENST00000558093 KLHL34Q8N239 644 aa10.07□□□□□ -0.8
SPG11-206ENST00000558093 FARP1Q9Y4F1 1045 aaPredicted RBP10.07□□□□□ -0.8
SPG11-206ENST00000558093 NPM1P06748 294 aaKnown RBP eCLIP10.05□□□□□ -0.8
SPG11-206ENST00000558093 MNX1P50219 401 aaPredicted RBP9.99□□□□□ -0.81
SPG11-206ENST00000558093 IFNLR1Q8IU57 520 aaPredicted RBP9.99□□□□□ -0.81
SPG11-206ENST00000558093 HAX1O00165 279 aa9.97□□□□□ -0.81
SPG11-206ENST00000558093 PAK3O75914 559 aaPredicted RBP9.94□□□□□ -0.82
SPG11-206ENST00000558093 CD44P16070 742 aaKnown RBP9.93□□□□□ -0.82
SPG11-206ENST00000558093 SPOCK2Q92563 424 aa9.93□□□□□ -0.82
SPG11-206ENST00000558093 C19orf67A6NJJ6 358 aa9.89□□□□□ -0.83
SPG11-206ENST00000558093 FAM212AQ96EL1 285 aa9.89□□□□□ -0.83
SPG11-206ENST00000558093 TSPYL2Q9H2G4 693 aaPredicted RBP9.88□□□□□ -0.83
SPG11-206ENST00000558093 NUBP1P53384 320 aa9.87□□□□□ -0.83
SPG11-206ENST00000558093 RASEFQ8IZ41 740 aa9.87□□□□□ -0.83
SPG11-206ENST00000558093 ZRANB1Q9UGI0 708 aa9.86□□□□□ -0.83
SPG11-206ENST00000558093 DCAF8Q5TAQ9 597 aa9.85□□□□□ -0.83
SPG11-206ENST00000558093 CIZ1Q9ULV3 898 aaPredicted RBP9.83□□□□□ -0.84
SPG11-206ENST00000558093 GSE1Q14687 1217 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms