RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 NISCHQ9Y2I1 1504 aa26.74■■□□□ 1.87
ARHGEF40-207ENST00000556399 DCAF8L2P0C7V8 631 aa25.38■■□□□ 1.65
ARHGEF40-207ENST00000556399 SUPT5HO00267 1087 aaKnown RBP25.23■■□□□ 1.63
ARHGEF40-207ENST00000556399 SHROOM4Q9ULL8 1493 aa25.02■■□□□ 1.6
ARHGEF40-207ENST00000556399 PCGF6Q9BYE7 350 aa24.16■■□□□ 1.46
ARHGEF40-207ENST00000556399 EHMT2Q96KQ7 1210 aa23.89■■□□□ 1.42
ARHGEF40-207ENST00000556399 HRCP23327 699 aa23.63■■□□□ 1.37
ARHGEF40-207ENST00000556399 FAM9AQ8IZU1 332 aaPredicted RBP23.6■■□□□ 1.37
ARHGEF40-207ENST00000556399 ZEB1P37275 1124 aaPredicted RBP23.47■■□□□ 1.35
ARHGEF40-207ENST00000556399 CHIC1Q5VXU3 224 aa23.41■■□□□ 1.34
ARHGEF40-207ENST00000556399 TRIM41Q8WV44 630 aa23.35■■□□□ 1.33
ARHGEF40-207ENST00000556399 TRIM26Q12899 539 aaPredicted RBP23.24■■□□□ 1.31
ARHGEF40-207ENST00000556399 PELP1Q8IZL8 1130 aaKnown RBP23.2■■□□□ 1.3
ARHGEF40-207ENST00000556399 TTBK1Q5TCY1 1321 aaPredicted RBP23.19■■□□□ 1.3
ARHGEF40-207ENST00000556399 PPARGC1BQ86YN6 1023 aaKnown RBP23.18■■□□□ 1.3
ARHGEF40-207ENST00000556399 LOC105371045A0A1W2PR82 267 aa23.17■■□□□ 1.3
ARHGEF40-207ENST00000556399 CCER1Q8TC90 406 aaPredicted RBP23.13■■□□□ 1.29
ARHGEF40-207ENST00000556399 CENPBP07199 599 aaPredicted RBP23.08■■□□□ 1.29
ARHGEF40-207ENST00000556399 APLP2Q06481 763 aa23■■□□□ 1.27
ARHGEF40-207ENST00000556399 UBTFP17480 764 aaKnown RBP22.68■■□□□ 1.22
ARHGEF40-207ENST00000556399 YTHDC1Q96MU7 727 aaKnown RBP22.65■■□□□ 1.22
ARHGEF40-207ENST00000556399 RANGAP1P46060 587 aaPredicted RBP22.61■■□□□ 1.21
ARHGEF40-207ENST00000556399 MYT1Q01538 1121 aa22.53■■□□□ 1.2
ARHGEF40-207ENST00000556399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
ARHGEF40-207ENST00000556399 ZCCHC6Q5VYS8 1495 aaKnown RBP22.4■■□□□ 1.18
ARHGEF40-207ENST00000556399 DCAF1Q9Y4B6 1507 aa22.33■■□□□ 1.17
ARHGEF40-207ENST00000556399 DIEXFQ68CQ4 756 aaKnown RBP22.33■■□□□ 1.17
ARHGEF40-207ENST00000556399 MYO15BQ96JP2 1530 aa22.3■■□□□ 1.16
ARHGEF40-207ENST00000556399 HNRNPUL2Q1KMD3 747 aaKnown RBP22.2■■□□□ 1.15
ARHGEF40-207ENST00000556399 GTF3C3Q9Y5Q9 886 aa22.12■■□□□ 1.13
ARHGEF40-207ENST00000556399 NEFLP07196 543 aa22.06■■□□□ 1.12
ARHGEF40-207ENST00000556399 ATP1B4Q9UN42 357 aaPredicted RBP22.06■■□□□ 1.12
ARHGEF40-207ENST00000556399 ERICH6Q7L0X2 663 aa22.04■■□□□ 1.12
ARHGEF40-207ENST00000556399 ACIN1Q9UKV3 1341 aaKnown RBP22.02■■□□□ 1.12
ARHGEF40-207ENST00000556399 CCDC180Q9P1Z9 1646 aa21.92■■□□□ 1.1
ARHGEF40-207ENST00000556399 ITGAEP38570 1179 aa21.92■■□□□ 1.1
ARHGEF40-207ENST00000556399 ZNF316A6NFI3 1004 aaPredicted RBP21.87■■□□□ 1.09
ARHGEF40-207ENST00000556399 SCAF1Q9H7N4 1312 aaKnown RBP21.83■■□□□ 1.09
ARHGEF40-207ENST00000556399 ABCC9O60706 1549 aa21.77■■□□□ 1.08
ARHGEF40-207ENST00000556399 SCRIBQ14160 1630 aa21.72■■□□□ 1.07
ARHGEF40-207ENST00000556399 NEUROD1Q13562 356 aa21.71■■□□□ 1.07
ARHGEF40-207ENST00000556399 CSRNP3Q8WYN3 585 aa21.65■■□□□ 1.06
ARHGEF40-207ENST00000556399 RSF1Q96T23 1441 aaPredicted RBP21.54■■□□□ 1.04
ARHGEF40-207ENST00000556399 PABPN1Q86U42 306 aaKnown RBP eCLIP21.5■■□□□ 1.03
ARHGEF40-207ENST00000556399 BCANQ96GW7 911 aa21.47■■□□□ 1.03
ARHGEF40-207ENST00000556399 FAM50AQ14320 339 aaKnown RBP21.42■■□□□ 1.02
ARHGEF40-207ENST00000556399 MIER1Q8N108 512 aa21.32■■□□□ 1
ARHGEF40-207ENST00000556399 POLR3GLQ9BT43 218 aa21.27■■□□□ 1
ARHGEF40-207ENST00000556399 ANP32CO43423 234 aa21.26■□□□□ 0.99
ARHGEF40-207ENST00000556399 CLSPNQ9HAW4 1339 aa21.26■□□□□ 0.99
ARHGEF40-207ENST00000556399 CEP162Q5TB80 1403 aa21.23■□□□□ 0.99
ARHGEF40-207ENST00000556399 CNGB1Q14028 1251 aaPredicted RBP21.22■□□□□ 0.99
ARHGEF40-207ENST00000556399 RB1CC1Q8TDY2 1594 aa21.21■□□□□ 0.99
ARHGEF40-207ENST00000556399 FKBP8Q14318 412 aa21.09■□□□□ 0.97
ARHGEF40-207ENST00000556399 CDK11AQ9UQ88 783 aaPredicted RBP21.09■□□□□ 0.97
ARHGEF40-207ENST00000556399 CLIP1P30622 1438 aa21.09■□□□□ 0.97
ARHGEF40-207ENST00000556399 TRIM52Q96A61 297 aa21.07■□□□□ 0.96
ARHGEF40-207ENST00000556399 TNIKQ9UKE5 1360 aa21.06■□□□□ 0.96
ARHGEF40-207ENST00000556399 EEA1Q15075 1411 aa21.06■□□□□ 0.96
ARHGEF40-207ENST00000556399 GOLGA3Q08378 1498 aa21.04■□□□□ 0.96
ARHGEF40-207ENST00000556399 DDX10Q13206 875 aaKnown RBP21.01■□□□□ 0.95
ARHGEF40-207ENST00000556399 P3H3Q8IVL6 736 aa21■□□□□ 0.95
ARHGEF40-207ENST00000556399 CECR2Q9BXF3 1484 aa21■□□□□ 0.95
ARHGEF40-207ENST00000556399 DAXXQ9UER7 740 aaPredicted RBP20.98■□□□□ 0.95
ARHGEF40-207ENST00000556399 RTL5Q5HYW3 569 aaPredicted RBP20.97■□□□□ 0.95
ARHGEF40-207ENST00000556399 NACADO15069 1562 aa20.88■□□□□ 0.93
ARHGEF40-207ENST00000556399 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.93
ARHGEF40-207ENST00000556399 TONSLQ96HA7 1378 aa20.84■□□□□ 0.93
ARHGEF40-207ENST00000556399 SOGA1O94964 1423 aa20.84■□□□□ 0.93
ARHGEF40-207ENST00000556399 CEP164Q9UPV0 1460 aa20.83■□□□□ 0.92
ARHGEF40-207ENST00000556399 MROH2BQ7Z745 1585 aa20.82■□□□□ 0.92
ARHGEF40-207ENST00000556399 HNRNPUQ00839 825 aaKnown RBP eCLIP20.81■□□□□ 0.92
ARHGEF40-207ENST00000556399 BAZ1AQ9NRL2 1556 aaPredicted RBP20.8■□□□□ 0.92
ARHGEF40-207ENST00000556399 ZNF326Q5BKZ1 582 aaKnown RBP20.78■□□□□ 0.92
ARHGEF40-207ENST00000556399 HIRIP3Q9BW71 556 aaPredicted RBP20.74■□□□□ 0.91
ARHGEF40-207ENST00000556399 SUPT16HQ9Y5B9 1047 aaKnown RBP20.73■□□□□ 0.91
ARHGEF40-207ENST00000556399 ABCC8Q09428 1581 aa20.72■□□□□ 0.91
ARHGEF40-207ENST00000556399 CCDC88BA6NC98 1476 aa20.71■□□□□ 0.91
ARHGEF40-207ENST00000556399 ANP32EQ9BTT0 268 aa20.66■□□□□ 0.9
ARHGEF40-207ENST00000556399 FAM9BQ8IZU0 186 aa20.64■□□□□ 0.89
ARHGEF40-207ENST00000556399 ANP32AP39687 249 aaKnown RBP20.64■□□□□ 0.89
ARHGEF40-207ENST00000556399 ARID3CA6NKF2 412 aa20.63■□□□□ 0.89
ARHGEF40-207ENST00000556399 IRX6P78412 446 aaPredicted RBP20.61■□□□□ 0.89
ARHGEF40-207ENST00000556399 WIZO95785 1651 aa20.6■□□□□ 0.89
ARHGEF40-207ENST00000556399 VPS8Q8N3P4 1428 aa20.59■□□□□ 0.89
ARHGEF40-207ENST00000556399 MYT1LQ9UL68 1186 aa20.54■□□□□ 0.88
ARHGEF40-207ENST00000556399 CHIC2Q9UKJ5 165 aa20.53■□□□□ 0.88
ARHGEF40-207ENST00000556399 BAZ1BQ9UIG0 1483 aaKnown RBP20.51■□□□□ 0.87
ARHGEF40-207ENST00000556399 SIN3AQ96ST3 1273 aa20.51■□□□□ 0.87
ARHGEF40-207ENST00000556399 NPM2Q86SE8 214 aaKnown RBP20.5■□□□□ 0.87
ARHGEF40-207ENST00000556399 MRS2Q9HD23 443 aa20.5■□□□□ 0.87
ARHGEF40-207ENST00000556399 CCNB3Q8WWL7 1395 aa20.5■□□□□ 0.87
ARHGEF40-207ENST00000556399 MTUS2Q5JR59 1369 aa20.49■□□□□ 0.87
ARHGEF40-207ENST00000556399 KIF27Q86VH2 1401 aa20.49■□□□□ 0.87
ARHGEF40-207ENST00000556399 KANK4Q5T7N3 995 aaPredicted RBP20.43■□□□□ 0.86
ARHGEF40-207ENST00000556399 CCDC136Q96JN2 1154 aa20.43■□□□□ 0.86
ARHGEF40-207ENST00000556399 TOP2AP11388 1531 aaKnown RBP20.43■□□□□ 0.86
ARHGEF40-207ENST00000556399 EIF4G2P78344 907 aaKnown RBP eCLIP20.42■□□□□ 0.86
ARHGEF40-207ENST00000556399 NBR1Q14596 966 aa20.42■□□□□ 0.86
ARHGEF40-207ENST00000556399 ZNF777Q9ULD5 760 aaPredicted RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms