RNA–Protein interactions for RNA: ENST00000554811.5

XRCC3-208, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 2

Gene XRCC3, Length 3,668 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-208ENST00000554811 NISCHQ9Y2I1 1504 aa22.98■■□□□ 1.27
XRCC3-208ENST00000554811 SHROOM4Q9ULL8 1493 aa20.98■□□□□ 0.95
XRCC3-208ENST00000554811 SUPT5HO00267 1087 aaKnown RBP20.75■□□□□ 0.91
XRCC3-208ENST00000554811 DCAF8L2P0C7V8 631 aa20.7■□□□□ 0.9
XRCC3-208ENST00000554811 PCGF6Q9BYE7 350 aa19.71■□□□□ 0.75
XRCC3-208ENST00000554811 EHMT2Q96KQ7 1210 aa19.65■□□□□ 0.74
XRCC3-208ENST00000554811 CHIC1Q5VXU3 224 aa19.6■□□□□ 0.73
XRCC3-208ENST00000554811 LOC105371045A0A1W2PR82 267 aa19.47■□□□□ 0.71
XRCC3-208ENST00000554811 PPARGC1BQ86YN6 1023 aaKnown RBP19.38■□□□□ 0.69
XRCC3-208ENST00000554811 FAM9AQ8IZU1 332 aaPredicted RBP19.38■□□□□ 0.69
XRCC3-208ENST00000554811 MYO15BQ96JP2 1530 aa19.36■□□□□ 0.69
XRCC3-208ENST00000554811 ZCCHC6Q5VYS8 1495 aaKnown RBP19.33■□□□□ 0.68
XRCC3-208ENST00000554811 HRCP23327 699 aa19.3■□□□□ 0.68
XRCC3-208ENST00000554811 TRIM41Q8WV44 630 aa19.01■□□□□ 0.63
XRCC3-208ENST00000554811 TTBK1Q5TCY1 1321 aaPredicted RBP18.98■□□□□ 0.63
XRCC3-208ENST00000554811 CCDC180Q9P1Z9 1646 aa18.95■□□□□ 0.62
XRCC3-208ENST00000554811 TRIM26Q12899 539 aaPredicted RBP18.82■□□□□ 0.6
XRCC3-208ENST00000554811 SCRIBQ14160 1630 aa18.66■□□□□ 0.58
XRCC3-208ENST00000554811 ABCC9O60706 1549 aa18.62■□□□□ 0.57
XRCC3-208ENST00000554811 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
XRCC3-208ENST00000554811 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.48■□□□□ 0.55
XRCC3-208ENST00000554811 CCER1Q8TC90 406 aaPredicted RBP18.47■□□□□ 0.55
XRCC3-208ENST00000554811 RANGAP1P46060 587 aaPredicted RBP18.46■□□□□ 0.55
XRCC3-208ENST00000554811 RSF1Q96T23 1441 aaPredicted RBP18.45■□□□□ 0.54
XRCC3-208ENST00000554811 ZEB1P37275 1124 aaPredicted RBP18.37■□□□□ 0.53
XRCC3-208ENST00000554811 UBTFP17480 764 aaKnown RBP18.31■□□□□ 0.52
XRCC3-208ENST00000554811 RB1CC1Q8TDY2 1594 aa18.31■□□□□ 0.52
XRCC3-208ENST00000554811 CECR2Q9BXF3 1484 aa18.28■□□□□ 0.52
XRCC3-208ENST00000554811 PABPN1Q86U42 306 aaKnown RBP eCLIP18.21■□□□□ 0.51
XRCC3-208ENST00000554811 YTHDC1Q96MU7 727 aaKnown RBP18.14■□□□□ 0.49
XRCC3-208ENST00000554811 HNRNPUL2Q1KMD3 747 aaKnown RBP18.09■□□□□ 0.49
XRCC3-208ENST00000554811 MROH2BQ7Z745 1585 aa18.07■□□□□ 0.48
XRCC3-208ENST00000554811 SCAF1Q9H7N4 1312 aaKnown RBP18.04■□□□□ 0.48
XRCC3-208ENST00000554811 DIEXFQ68CQ4 756 aaKnown RBP17.98■□□□□ 0.47
XRCC3-208ENST00000554811 WIZO95785 1651 aa17.97■□□□□ 0.47
XRCC3-208ENST00000554811 APLP2Q06481 763 aa17.96■□□□□ 0.47
XRCC3-208ENST00000554811 ABCC8Q09428 1581 aa17.88■□□□□ 0.45
XRCC3-208ENST00000554811 NEUROD1Q13562 356 aa17.87■□□□□ 0.45
XRCC3-208ENST00000554811 CENPBP07199 599 aaPredicted RBP17.85■□□□□ 0.45
XRCC3-208ENST00000554811 CSRNP3Q8WYN3 585 aa17.85■□□□□ 0.45
XRCC3-208ENST00000554811 GTF3C3Q9Y5Q9 886 aa17.84■□□□□ 0.45
XRCC3-208ENST00000554811 SOGA1O94964 1423 aa17.81■□□□□ 0.44
XRCC3-208ENST00000554811 CCDC88BA6NC98 1476 aa17.8■□□□□ 0.44
XRCC3-208ENST00000554811 ITGAEP38570 1179 aa17.79■□□□□ 0.44
XRCC3-208ENST00000554811 NACADO15069 1562 aa17.78■□□□□ 0.44
XRCC3-208ENST00000554811 ACIN1Q9UKV3 1341 aaKnown RBP17.77■□□□□ 0.43
XRCC3-208ENST00000554811 CEP162Q5TB80 1403 aa17.75■□□□□ 0.43
XRCC3-208ENST00000554811 RUSC2Q8N2Y8 1516 aa17.69■□□□□ 0.42
XRCC3-208ENST00000554811 ATP1B4Q9UN42 357 aaPredicted RBP17.66■□□□□ 0.42
XRCC3-208ENST00000554811 ZNF316A6NFI3 1004 aaPredicted RBP17.63■□□□□ 0.41
XRCC3-208ENST00000554811 BAZ1AQ9NRL2 1556 aaPredicted RBP17.63■□□□□ 0.41
XRCC3-208ENST00000554811 PELP1Q8IZL8 1130 aaKnown RBP17.61■□□□□ 0.41
XRCC3-208ENST00000554811 MIER1Q8N108 512 aa17.56■□□□□ 0.4
XRCC3-208ENST00000554811 TNIKQ9UKE5 1360 aa17.51■□□□□ 0.39
XRCC3-208ENST00000554811 WRNQ14191 1432 aaPredicted RBP eCLIP17.5■□□□□ 0.39
XRCC3-208ENST00000554811 CLIP1P30622 1438 aa17.46■□□□□ 0.39
XRCC3-208ENST00000554811 TOP2AP11388 1531 aaKnown RBP17.45■□□□□ 0.38
XRCC3-208ENST00000554811 GOLGA3Q08378 1498 aa17.44■□□□□ 0.38
XRCC3-208ENST00000554811 SMARCA4P51532 1647 aa17.42■□□□□ 0.38
XRCC3-208ENST00000554811 SMARCA2P51531 1590 aa17.4■□□□□ 0.38
XRCC3-208ENST00000554811 P3H3Q8IVL6 736 aa17.39■□□□□ 0.37
XRCC3-208ENST00000554811 FAM50AQ14320 339 aaKnown RBP17.31■□□□□ 0.36
XRCC3-208ENST00000554811 EEA1Q15075 1411 aa17.29■□□□□ 0.36
XRCC3-208ENST00000554811 KANK4Q5T7N3 995 aaPredicted RBP17.29■□□□□ 0.36
XRCC3-208ENST00000554811 RAPGEF2Q9Y4G8 1499 aa17.27■□□□□ 0.36
XRCC3-208ENST00000554811 CEP164Q9UPV0 1460 aa17.27■□□□□ 0.36
XRCC3-208ENST00000554811 BAZ1BQ9UIG0 1483 aaKnown RBP17.26■□□□□ 0.35
XRCC3-208ENST00000554811 BCANQ96GW7 911 aa17.25■□□□□ 0.35
XRCC3-208ENST00000554811 HIRIP3Q9BW71 556 aaPredicted RBP17.24■□□□□ 0.35
XRCC3-208ENST00000554811 EIF4G1Q04637 1599 aaKnown RBP17.18■□□□□ 0.34
XRCC3-208ENST00000554811 VPS8Q8N3P4 1428 aa17.18■□□□□ 0.34
XRCC3-208ENST00000554811 SYNJ1O43426 1573 aa17.17■□□□□ 0.34
XRCC3-208ENST00000554811 ATAD2BQ9ULI0 1458 aa17.11■□□□□ 0.33
XRCC3-208ENST00000554811 CNGB1Q14028 1251 aaPredicted RBP17.1■□□□□ 0.33
XRCC3-208ENST00000554811 DDX10Q13206 875 aaKnown RBP17.09■□□□□ 0.33
XRCC3-208ENST00000554811 UNC13AQ9UPW8 1703 aa17.09■□□□□ 0.33
XRCC3-208ENST00000554811 ARID3CA6NKF2 412 aa17.08■□□□□ 0.32
XRCC3-208ENST00000554811 MYT1Q01538 1121 aa17.08■□□□□ 0.32
XRCC3-208ENST00000554811 KCNH8Q96L42 1107 aa17.06■□□□□ 0.32
XRCC3-208ENST00000554811 SIN3AQ96ST3 1273 aa17.06■□□□□ 0.32
XRCC3-208ENST00000554811 BICRAQ9NZM4 1560 aa16.99■□□□□ 0.31
XRCC3-208ENST00000554811 KIF21BO75037 1637 aa16.98■□□□□ 0.31
XRCC3-208ENST00000554811 DHX57Q6P158 1386 aaKnown RBP16.98■□□□□ 0.31
XRCC3-208ENST00000554811 TRIM52Q96A61 297 aa16.98■□□□□ 0.31
XRCC3-208ENST00000554811 KIF27Q86VH2 1401 aa16.95■□□□□ 0.3
XRCC3-208ENST00000554811 CCNB3Q8WWL7 1395 aa16.93■□□□□ 0.3
XRCC3-208ENST00000554811 SUPT16HQ9Y5B9 1047 aaKnown RBP16.91■□□□□ 0.3
XRCC3-208ENST00000554811 NEFLP07196 543 aa16.9■□□□□ 0.3
XRCC3-208ENST00000554811 FKBP8Q14318 412 aa16.9■□□□□ 0.3
XRCC3-208ENST00000554811 CUX2O14529 1486 aa16.89■□□□□ 0.29
XRCC3-208ENST00000554811 ARAP1Q96P48 1450 aa16.89■□□□□ 0.29
XRCC3-208ENST00000554811 CHIC2Q9UKJ5 165 aa16.87■□□□□ 0.29
XRCC3-208ENST00000554811 POLR3GLQ9BT43 218 aa16.86■□□□□ 0.29
XRCC3-208ENST00000554811 RAB3GAP2Q9H2M9 1393 aa16.86■□□□□ 0.29
XRCC3-208ENST00000554811 IRX6P78412 446 aaPredicted RBP16.81■□□□□ 0.28
XRCC3-208ENST00000554811 ANP32CO43423 234 aa16.8■□□□□ 0.28
XRCC3-208ENST00000554811 CARMIL1Q5VZK9 1371 aa16.8■□□□□ 0.28
XRCC3-208ENST00000554811 SENP3-EIF4A1A0A087X0R7 540 aa16.78■□□□□ 0.28
XRCC3-208ENST00000554811 RRP7BPQ9NSQ0 103 aa16.76■□□□□ 0.27
XRCC3-208ENST00000554811 CUX1P39880 1505 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms