RNA–Protein interactions for RNA: ENST00000554636.1

VTI1B-203, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 3

Gene VTI1B, Length 565 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-203ENST00000554636 AEBP2Q6ZN18 517 aaPredicted RBP19.79■□□□□ 0.76
VTI1B-203ENST00000554636 CHIC1Q5VXU3 224 aa19.09■□□□□ 0.65
VTI1B-203ENST00000554636 PHF23Q9BUL5 403 aaPredicted RBP16.79■□□□□ 0.28
VTI1B-203ENST00000554636 SENP3Q9H4L4 574 aaPredicted RBP16.79■□□□□ 0.28
VTI1B-203ENST00000554636 FOXD1Q16676 465 aa15.64■□□□□ 0.09
VTI1B-203ENST00000554636 PLPPR3Q6T4P5 718 aa15.41■□□□□ 0.06
VTI1B-203ENST00000554636 ADRA2BP18089 450 aa14.91□□□□□ -0.02
VTI1B-203ENST00000554636 PPP6R1Q9UPN7 881 aa14.91□□□□□ -0.02
VTI1B-203ENST00000554636 PIAS4Q8N2W9 510 aaPredicted RBP14.74□□□□□ -0.05
VTI1B-203ENST00000554636 MSH5O43196 834 aa14.46□□□□□ -0.09
VTI1B-203ENST00000554636 MAPK8IP2Q13387 824 aaPredicted RBP13.59□□□□□ -0.23
VTI1B-203ENST00000554636 PPP4R3CPQ6ZMV5 832 aa13.58□□□□□ -0.24
VTI1B-203ENST00000554636 POTEDQ86YR6 584 aa13.58□□□□□ -0.24
VTI1B-203ENST00000554636 SCAF1Q9H7N4 1312 aaKnown RBP13.56□□□□□ -0.24
VTI1B-203ENST00000554636 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
VTI1B-203ENST00000554636 CNKSR2Q8WXI2 1034 aa13.21□□□□□ -0.29
VTI1B-203ENST00000554636 NCBP3Q53F19 620 aaKnown RBP13.14□□□□□ -0.31
VTI1B-203ENST00000554636 KCNA4P22459 653 aa13.08□□□□□ -0.32
VTI1B-203ENST00000554636 NPM3O75607 178 aaKnown RBP12.99□□□□□ -0.33
VTI1B-203ENST00000554636 RNF216Q9NWF9 866 aaPredicted RBP12.99□□□□□ -0.33
VTI1B-203ENST00000554636 HOXD11P31277 338 aaPredicted RBP12.97□□□□□ -0.33
VTI1B-203ENST00000554636 DCAF8L1A6NGE4 600 aa12.94□□□□□ -0.34
VTI1B-203ENST00000554636 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.46□□□□□ -0.411e-8■■□□□ 14.2
VTI1B-203ENST00000554636 DNAJC5BQ9UF47 199 aa12.45□□□□□ -0.42
VTI1B-203ENST00000554636 SLC4A1APQ9BWU0 796 aaKnown RBP12.41□□□□□ -0.42
VTI1B-203ENST00000554636 RNF39Q9H2S5 420 aa12.38□□□□□ -0.43
VTI1B-203ENST00000554636 SLC4A2P04920 1241 aa12.29□□□□□ -0.44
VTI1B-203ENST00000554636 CACNB1Q02641 598 aaPredicted RBP12.27□□□□□ -0.45
VTI1B-203ENST00000554636 U3KPZ7 1027 aaPredicted RBP12.21□□□□□ -0.45
VTI1B-203ENST00000554636 C1QBPQ07021 282 aaKnown RBP12.19□□□□□ -0.46
VTI1B-203ENST00000554636 FOXD4L1Q9NU39 408 aa12.05□□□□□ -0.48
VTI1B-203ENST00000554636 ZBTB22O15209 634 aa12.03□□□□□ -0.48
VTI1B-203ENST00000554636 MYCNP04198 464 aaPredicted RBP11.98□□□□□ -0.49
VTI1B-203ENST00000554636 SPINK5Q9NQ38 1064 aaPredicted RBP11.97□□□□□ -0.49
VTI1B-203ENST00000554636 CAPN15O75808 1086 aa11.95□□□□□ -0.5
VTI1B-203ENST00000554636 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.93□□□□□ -0.5
VTI1B-203ENST00000554636 HNRNPUL2Q1KMD3 747 aaKnown RBP11.93□□□□□ -0.5
VTI1B-203ENST00000554636 EHMT2Q96KQ7 1210 aa11.91□□□□□ -0.5
VTI1B-203ENST00000554636 SAMD1Q6SPF0 538 aaPredicted RBP11.9□□□□□ -0.5
VTI1B-203ENST00000554636 TRHP20396 242 aaPredicted RBP11.86□□□□□ -0.51
VTI1B-203ENST00000554636 APLP2Q06481 763 aa11.86□□□□□ -0.51
VTI1B-203ENST00000554636 CSRNP3Q8WYN3 585 aa11.76□□□□□ -0.53
VTI1B-203ENST00000554636 ZNF219Q9P2Y4 722 aaPredicted RBP11.76□□□□□ -0.53
VTI1B-203ENST00000554636 ATF5Q9Y2D1 282 aaPredicted RBP11.74□□□□□ -0.53
VTI1B-203ENST00000554636 ABCB7O75027 752 aa11.73□□□□□ -0.53
VTI1B-203ENST00000554636 DSG3P32926 999 aa11.73□□□□□ -0.53
VTI1B-203ENST00000554636 ATXN8OSP0DMR3 200 aa11.58□□□□□ -0.56
VTI1B-203ENST00000554636 POLA2Q14181 598 aa11.57□□□□□ -0.56
VTI1B-203ENST00000554636 ZBTB12Q9Y330 459 aaPredicted RBP11.3□□□□□ -0.6
VTI1B-203ENST00000554636 FBLN2P98095 1184 aa11.22□□□□□ -0.61
VTI1B-203ENST00000554636 OSCARQ8IYS5 282 aa11.22□□□□□ -0.61
VTI1B-203ENST00000554636 MKRN4PQ13434 485 aaPredicted RBP11.18□□□□□ -0.62
VTI1B-203ENST00000554636 RBM42Q9BTD8 480 aaKnown RBP11.15□□□□□ -0.62
VTI1B-203ENST00000554636 SPDYE2BA6NHP3 402 aa10.98□□□□□ -0.65
VTI1B-203ENST00000554636 SPDYE6P0CI01 402 aa10.98□□□□□ -0.65
VTI1B-203ENST00000554636 SPDYE2Q495Y8 402 aa10.98□□□□□ -0.65
VTI1B-203ENST00000554636 AKT1S1Q96B36 256 aa10.97□□□□□ -0.65
VTI1B-203ENST00000554636 ZNF692Q9BU19 519 aaPredicted RBP10.97□□□□□ -0.65
VTI1B-203ENST00000554636 REM2Q8IYK8 340 aaPredicted RBP10.91□□□□□ -0.66
VTI1B-203ENST00000554636 SSUH2Q9Y2M2 353 aa10.87□□□□□ -0.67
VTI1B-203ENST00000554636 SPDYE4A6NLX3 237 aa10.84□□□□□ -0.67
VTI1B-203ENST00000554636 CHRDL2Q6WN34 429 aa10.82□□□□□ -0.68
VTI1B-203ENST00000554636 PABPN1Q86U42 306 aaKnown RBP eCLIP10.82□□□□□ -0.68
VTI1B-203ENST00000554636 PITPNM1O00562 1244 aa10.81□□□□□ -0.68
VTI1B-203ENST00000554636 CLEC11AQ9Y240 323 aa10.78□□□□□ -0.68
VTI1B-203ENST00000554636 SPDYE1Q8NFV5 336 aaPredicted RBP10.73□□□□□ -0.69
VTI1B-203ENST00000554636 POTEHQ6S545 545 aa10.71□□□□□ -0.69
VTI1B-203ENST00000554636 FKBP8Q14318 412 aa10.7□□□□□ -0.7
VTI1B-203ENST00000554636 PIP4P2Q8N4L2 257 aa10.64□□□□□ -0.71
VTI1B-203ENST00000554636 PRR29P0C7W0 189 aa10.6□□□□□ -0.71
VTI1B-203ENST00000554636 FXR2P51116 673 aaKnown RBP eCLIP10.59□□□□□ -0.71
VTI1B-203ENST00000554636 PRKAR2AP13861 404 aaKnown RBP10.54□□□□□ -0.72
VTI1B-203ENST00000554636 CHADLQ6NUI6 762 aa10.54□□□□□ -0.72
VTI1B-203ENST00000554636 PROM2Q8N271 834 aa10.54□□□□□ -0.72
VTI1B-203ENST00000554636 STAG3Q9UJ98 1225 aa10.53□□□□□ -0.72
VTI1B-203ENST00000554636 CREBZFQ9NS37 354 aa10.4□□□□□ -0.74
VTI1B-203ENST00000554636 HAX1O00165 279 aa10.38□□□□□ -0.75
VTI1B-203ENST00000554636 FARP1Q9Y4F1 1045 aaPredicted RBP10.35□□□□□ -0.75
VTI1B-203ENST00000554636 MIER1Q8N108 512 aa10.32□□□□□ -0.76
VTI1B-203ENST00000554636 FBXO3Q9UK99 471 aa10.3□□□□□ -0.76
VTI1B-203ENST00000554636 PLCD3Q8N3E9 789 aa10.29□□□□□ -0.76
VTI1B-203ENST00000554636 NISCHQ9Y2I1 1504 aa10.28□□□□□ -0.76
VTI1B-203ENST00000554636 PLEKHG5O94827 1062 aa10.27□□□□□ -0.77
VTI1B-203ENST00000554636 EVX2Q03828 476 aa10.27□□□□□ -0.77
VTI1B-203ENST00000554636 MNX1P50219 401 aaPredicted RBP10.25□□□□□ -0.77
VTI1B-203ENST00000554636 C19orf67A6NJJ6 358 aa10.24□□□□□ -0.77
VTI1B-203ENST00000554636 CD44P16070 742 aaKnown RBP10.23□□□□□ -0.77
VTI1B-203ENST00000554636 NPM1P06748 294 aaKnown RBP eCLIP10.21□□□□□ -0.77
VTI1B-203ENST00000554636 VASPP50552 380 aaPredicted RBP10.2□□□□□ -0.78
VTI1B-203ENST00000554636 SP7Q8TDD2 431 aaPredicted RBP10.19□□□□□ -0.78
VTI1B-203ENST00000554636 ZRANB1Q9UGI0 708 aa10.15□□□□□ -0.78
VTI1B-203ENST00000554636 PAK3O75914 559 aaPredicted RBP10.12□□□□□ -0.79
VTI1B-203ENST00000554636 KLHL34Q8N239 644 aa10.12□□□□□ -0.79
VTI1B-203ENST00000554636 TSPYL2Q9H2G4 693 aaPredicted RBP10.12□□□□□ -0.79
VTI1B-203ENST00000554636 ZBTB47Q9UFB7 747 aaPredicted RBP10.12□□□□□ -0.79
VTI1B-203ENST00000554636 RASEFQ8IZ41 740 aa10.08□□□□□ -0.8
VTI1B-203ENST00000554636 PHF12Q96QT6 1004 aa10.06□□□□□ -0.8
VTI1B-203ENST00000554636 IFNLR1Q8IU57 520 aaPredicted RBP10.04□□□□□ -0.8
VTI1B-203ENST00000554636 GABBR2O75899 941 aa10.03□□□□□ -0.8
VTI1B-203ENST00000554636 NUBP1P53384 320 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms