RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 AEBP2Q6ZN18 517 aaPredicted RBP25.52■■□□□ 1.68
SCFD1-212ENST00000554486 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
SCFD1-212ENST00000554486 SENP3Q9H4L4 574 aaPredicted RBP21.83■■□□□ 1.09
SCFD1-212ENST00000554486 PHF23Q9BUL5 403 aaPredicted RBP21.68■■□□□ 1.06
SCFD1-212ENST00000554486 FOXD1Q16676 465 aa20.22■□□□□ 0.83
SCFD1-212ENST00000554486 PLPPR3Q6T4P5 718 aa20.06■□□□□ 0.8
SCFD1-212ENST00000554486 ADRA2BP18089 450 aa19.21■□□□□ 0.67
SCFD1-212ENST00000554486 PPP6R1Q9UPN7 881 aa19.21■□□□□ 0.67
SCFD1-212ENST00000554486 PIAS4Q8N2W9 510 aaPredicted RBP19.05■□□□□ 0.64
SCFD1-212ENST00000554486 MSH5O43196 834 aa18.84■□□□□ 0.61
SCFD1-212ENST00000554486 SCAF1Q9H7N4 1312 aaKnown RBP17.75■□□□□ 0.43
SCFD1-212ENST00000554486 PPP4R3CPQ6ZMV5 832 aa17.61■□□□□ 0.41
SCFD1-212ENST00000554486 POTEDQ86YR6 584 aa17.52■□□□□ 0.4
SCFD1-212ENST00000554486 MAPK8IP2Q13387 824 aaPredicted RBP17.49■□□□□ 0.39
SCFD1-212ENST00000554486 DMRT2Q9Y5R5 561 aa17.35■□□□□ 0.37
SCFD1-212ENST00000554486 CNKSR2Q8WXI2 1034 aa17.21■□□□□ 0.35
SCFD1-212ENST00000554486 NCBP3Q53F19 620 aaKnown RBP17.16■□□□□ 0.34
SCFD1-212ENST00000554486 KCNA4P22459 653 aa16.93■□□□□ 0.3
SCFD1-212ENST00000554486 RNF216Q9NWF9 866 aaPredicted RBP16.92■□□□□ 0.3
SCFD1-212ENST00000554486 HOXD11P31277 338 aaPredicted RBP16.9■□□□□ 0.3
SCFD1-212ENST00000554486 NPM3O75607 178 aaKnown RBP16.78■□□□□ 0.28
SCFD1-212ENST00000554486 DCAF8L1A6NGE4 600 aa16.66■□□□□ 0.26
SCFD1-212ENST00000554486 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
SCFD1-212ENST00000554486 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.15■□□□□ 0.18
SCFD1-212ENST00000554486 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.16
SCFD1-212ENST00000554486 RNF39Q9H2S5 420 aa16.05■□□□□ 0.16
SCFD1-212ENST00000554486 C1QBPQ07021 282 aaKnown RBP15.92■□□□□ 0.14
SCFD1-212ENST00000554486 EHMT2Q96KQ7 1210 aa15.89■□□□□ 0.13
SCFD1-212ENST00000554486 SLC4A2P04920 1241 aa15.88■□□□□ 0.13
SCFD1-212ENST00000554486 CACNB1Q02641 598 aaPredicted RBP15.88■□□□□ 0.13
SCFD1-212ENST00000554486 U3KPZ7 1027 aaPredicted RBP15.77■□□□□ 0.12
SCFD1-212ENST00000554486 CSRNP3Q8WYN3 585 aa15.7■□□□□ 0.1
SCFD1-212ENST00000554486 ZBTB22O15209 634 aa15.65■□□□□ 0.1
SCFD1-212ENST00000554486 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.64■□□□□ 0.09
SCFD1-212ENST00000554486 HNRNPUL2Q1KMD3 747 aaKnown RBP15.64■□□□□ 0.09
SCFD1-212ENST00000554486 FOXD4L1Q9NU39 408 aa15.64■□□□□ 0.09
SCFD1-212ENST00000554486 MYCNP04198 464 aaPredicted RBP15.58■□□□□ 0.08
SCFD1-212ENST00000554486 APLP2Q06481 763 aa15.57■□□□□ 0.08
SCFD1-212ENST00000554486 SAMD1Q6SPF0 538 aaPredicted RBP15.53■□□□□ 0.08
SCFD1-212ENST00000554486 CAPN15O75808 1086 aa15.43■□□□□ 0.06
SCFD1-212ENST00000554486 SPINK5Q9NQ38 1064 aaPredicted RBP15.4■□□□□ 0.06
SCFD1-212ENST00000554486 ZNF219Q9P2Y4 722 aaPredicted RBP15.31■□□□□ 0.04
SCFD1-212ENST00000554486 TRHP20396 242 aaPredicted RBP15.29■□□□□ 0.04
SCFD1-212ENST00000554486 DSG3P32926 999 aa15.19■□□□□ 0.02
SCFD1-212ENST00000554486 ATXN8OSP0DMR3 200 aa15.17■□□□□ 0.02
SCFD1-212ENST00000554486 ATF5Q9Y2D1 282 aaPredicted RBP15.07■□□□□ 0
SCFD1-212ENST00000554486 ABCB7O75027 752 aa15.06■□□□□ 0
SCFD1-212ENST00000554486 POLA2Q14181 598 aa14.98□□□□□ -0.01
SCFD1-212ENST00000554486 ZBTB12Q9Y330 459 aaPredicted RBP14.79□□□□□ -0.04
SCFD1-212ENST00000554486 NISCHQ9Y2I1 1504 aa14.74□□□□□ -0.05
SCFD1-212ENST00000554486 FBLN2P98095 1184 aa14.61□□□□□ -0.07
SCFD1-212ENST00000554486 RBM42Q9BTD8 480 aaKnown RBP14.58□□□□□ -0.08
SCFD1-212ENST00000554486 OSCARQ8IYS5 282 aa14.43□□□□□ -0.1
SCFD1-212ENST00000554486 MKRN4PQ13434 485 aaPredicted RBP14.4□□□□□ -0.1
SCFD1-212ENST00000554486 SPDYE2BA6NHP3 402 aa14.32□□□□□ -0.12
SCFD1-212ENST00000554486 SPDYE6P0CI01 402 aa14.32□□□□□ -0.12
SCFD1-212ENST00000554486 SPDYE2Q495Y8 402 aa14.32□□□□□ -0.12
SCFD1-212ENST00000554486 AKT1S1Q96B36 256 aa14.31□□□□□ -0.12
SCFD1-212ENST00000554486 ZNF692Q9BU19 519 aaPredicted RBP14.23□□□□□ -0.13
SCFD1-212ENST00000554486 REM2Q8IYK8 340 aaPredicted RBP14.13□□□□□ -0.15
SCFD1-212ENST00000554486 SSUH2Q9Y2M2 353 aa14.12□□□□□ -0.15
SCFD1-212ENST00000554486 FKBP8Q14318 412 aa14.09□□□□□ -0.15
SCFD1-212ENST00000554486 SPDYE4A6NLX3 237 aa14.05□□□□□ -0.16
SCFD1-212ENST00000554486 CHRDL2Q6WN34 429 aa14.01□□□□□ -0.17
SCFD1-212ENST00000554486 PABPN1Q86U42 306 aaKnown RBP eCLIP14.01□□□□□ -0.17
SCFD1-212ENST00000554486 SPDYE1Q8NFV5 336 aaPredicted RBP13.98□□□□□ -0.17
SCFD1-212ENST00000554486 PITPNM1O00562 1244 aa13.94□□□□□ -0.18
SCFD1-212ENST00000554486 CLEC11AQ9Y240 323 aa13.92□□□□□ -0.18
SCFD1-212ENST00000554486 POTEHQ6S545 545 aa13.85□□□□□ -0.19
SCFD1-212ENST00000554486 STAG3Q9UJ98 1225 aa13.81□□□□□ -0.2
SCFD1-212ENST00000554486 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
SCFD1-212ENST00000554486 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
SCFD1-212ENST00000554486 PROM2Q8N271 834 aa13.75□□□□□ -0.21
SCFD1-212ENST00000554486 PIP4P2Q8N4L2 257 aa13.74□□□□□ -0.21
SCFD1-212ENST00000554486 PRKAR2AP13861 404 aaKnown RBP13.63□□□□□ -0.23
SCFD1-212ENST00000554486 CHADLQ6NUI6 762 aa13.53□□□□□ -0.24
SCFD1-212ENST00000554486 FBXO3Q9UK99 471 aa13.49□□□□□ -0.25
SCFD1-212ENST00000554486 CREBZFQ9NS37 354 aa13.45□□□□□ -0.26
SCFD1-212ENST00000554486 HAX1O00165 279 aa13.44□□□□□ -0.26
SCFD1-212ENST00000554486 PLEKHG5O94827 1062 aa13.44□□□□□ -0.26
SCFD1-212ENST00000554486 FARP1Q9Y4F1 1045 aaPredicted RBP13.42□□□□□ -0.26
SCFD1-212ENST00000554486 MIER1Q8N108 512 aa13.4□□□□□ -0.26
SCFD1-212ENST00000554486 NPM1P06748 294 aaKnown RBP eCLIP13.35□□□□□ -0.27
SCFD1-212ENST00000554486 PLCD3Q8N3E9 789 aa13.35□□□□□ -0.27
SCFD1-212ENST00000554486 VASPP50552 380 aaPredicted RBP13.34□□□□□ -0.27
SCFD1-212ENST00000554486 C19orf67A6NJJ6 358 aa13.29□□□□□ -0.28
SCFD1-212ENST00000554486 RTN4Q9NQC3 1192 aaKnown RBP13.28□□□□□ -0.28
SCFD1-212ENST00000554486 ZBTB47Q9UFB7 747 aaPredicted RBP13.28□□□□□ -0.28
SCFD1-212ENST00000554486 MNX1P50219 401 aaPredicted RBP13.25□□□□□ -0.29
SCFD1-212ENST00000554486 IFNLR1Q8IU57 520 aaPredicted RBP13.24□□□□□ -0.29
SCFD1-212ENST00000554486 CD44P16070 742 aaKnown RBP13.23□□□□□ -0.29
SCFD1-212ENST00000554486 SP7Q8TDD2 431 aaPredicted RBP13.21□□□□□ -0.29
SCFD1-212ENST00000554486 PAK3O75914 559 aaPredicted RBP13.2□□□□□ -0.3
SCFD1-212ENST00000554486 EVX2Q03828 476 aa13.18□□□□□ -0.3
SCFD1-212ENST00000554486 AMER1Q5JTC6 1135 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-212ENST00000554486 ZRANB1Q9UGI0 708 aa13.13□□□□□ -0.31
SCFD1-212ENST00000554486 KLHL34Q8N239 644 aa13.11□□□□□ -0.31
SCFD1-212ENST00000554486 CLCN6P51797 869 aa13.09□□□□□ -0.31
SCFD1-212ENST00000554486 ZNF579Q8NAF0 562 aaKnown RBP13.04□□□□□ -0.32
SCFD1-212ENST00000554486 TSPYL2Q9H2G4 693 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms