RNA–Protein interactions for RNA: ENST00000550589.1

CCDC59-204, Transcript of coiled-coil domain containing 59, humanhuman

TSL 2

Gene CCDC59, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC59-204ENST00000550589 AEBP2Q6ZN18 517 aaPredicted RBP15.44■□□□□ 0.06
CCDC59-204ENST00000550589 CHIC1Q5VXU3 224 aa14.81□□□□□ -0.04
CCDC59-204ENST00000550589 POTEDQ86YR6 584 aa14.53□□□□□ -0.08
CCDC59-204ENST00000550589 SENP3Q9H4L4 574 aaPredicted RBP13.75□□□□□ -0.21
CCDC59-204ENST00000550589 PHF23Q9BUL5 403 aaPredicted RBP13.21□□□□□ -0.29
CCDC59-204ENST00000550589 MSH5O43196 834 aa12.76□□□□□ -0.37
CCDC59-204ENST00000550589 FOXD1Q16676 465 aa12.74□□□□□ -0.37
CCDC59-204ENST00000550589 CACNB1Q02641 598 aaPredicted RBP11.69□□□□□ -0.54
CCDC59-204ENST00000550589 PIAS4Q8N2W9 510 aaPredicted RBP11.69□□□□□ -0.54
CCDC59-204ENST00000550589 POTEHQ6S545 545 aa11.18□□□□□ -0.62
CCDC59-204ENST00000550589 PLPPR3Q6T4P5 718 aa11.04□□□□□ -0.64
CCDC59-204ENST00000550589 PPP6R1Q9UPN7 881 aa10.75□□□□□ -0.69
CCDC59-204ENST00000550589 ADRA2BP18089 450 aa10.69□□□□□ -0.7
CCDC59-204ENST00000550589 DMRT2Q9Y5R5 561 aa10.61□□□□□ -0.71
CCDC59-204ENST00000550589 RNF39Q9H2S5 420 aa10.57□□□□□ -0.72
CCDC59-204ENST00000550589 C1QBPQ07021 282 aaKnown RBP10.49□□□□□ -0.73
CCDC59-204ENST00000550589 DCAF8L1A6NGE4 600 aa10.25□□□□□ -0.77
CCDC59-204ENST00000550589 SCAF1Q9H7N4 1312 aaKnown RBP10.18□□□□□ -0.78
CCDC59-204ENST00000550589 MAPK8IP2Q13387 824 aaPredicted RBP10.15□□□□□ -0.78
CCDC59-204ENST00000550589 SP7Q8TDD2 431 aaPredicted RBP9.87□□□□□ -0.83
CCDC59-204ENST00000550589 PLSCR2Q9NRY7 297 aa9.82□□□□□ -0.84
CCDC59-204ENST00000550589 DNAJC5BQ9UF47 199 aa9.8□□□□□ -0.84
CCDC59-204ENST00000550589 PPP4R3CPQ6ZMV5 832 aa9.76□□□□□ -0.85
CCDC59-204ENST00000550589 HOXD11P31277 338 aaPredicted RBP9.67□□□□□ -0.86
CCDC59-204ENST00000550589 CNKSR2Q8WXI2 1034 aa9.47□□□□□ -0.89
CCDC59-204ENST00000550589 KCNA4P22459 653 aa9.45□□□□□ -0.9
CCDC59-204ENST00000550589 CHRDL2Q6WN34 429 aa9.43□□□□□ -0.9
CCDC59-204ENST00000550589 DSG3P32926 999 aa9.41□□□□□ -0.9
CCDC59-204ENST00000550589 NCBP3Q53F19 620 aaKnown RBP9.38□□□□□ -0.91
CCDC59-204ENST00000550589 NPM3O75607 178 aaKnown RBP9.35□□□□□ -0.91
CCDC59-204ENST00000550589 RNF216Q9NWF9 866 aaPredicted RBP9.32□□□□□ -0.92
CCDC59-204ENST00000550589 RBM42Q9BTD8 480 aaKnown RBP9.3□□□□□ -0.92
CCDC59-204ENST00000550589 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.29□□□□□ -0.922e-7■■□□□ 12.6
CCDC59-204ENST00000550589 CAPN15O75808 1086 aa9.23□□□□□ -0.93
CCDC59-204ENST00000550589 LHX8Q68G74 356 aa9.23□□□□□ -0.93
CCDC59-204ENST00000550589 HAX1O00165 279 aa9.15□□□□□ -0.94
CCDC59-204ENST00000550589 NISCHQ9Y2I1 1504 aa9.03□□□□□ -0.96
CCDC59-204ENST00000550589 SPINK5Q9NQ38 1064 aaPredicted RBP8.98□□□□□ -0.97
CCDC59-204ENST00000550589 PCDH10Q9P2E7 1040 aa8.95□□□□□ -0.98
CCDC59-204ENST00000550589 SLC4A1APQ9BWU0 796 aaKnown RBP8.92□□□□□ -0.98
CCDC59-204ENST00000550589 SLC4A2P04920 1241 aa8.9□□□□□ -0.99
CCDC59-204ENST00000550589 APLP2Q06481 763 aa8.86□□□□□ -0.99
CCDC59-204ENST00000550589 PIP4P2Q8N4L2 257 aa8.85□□□□□ -0.99
CCDC59-204ENST00000550589 ZNF219Q9P2Y4 722 aaPredicted RBP8.81□□□□□ -1
CCDC59-204ENST00000550589 U3KPZ7 1027 aaPredicted RBP8.78□□□□□ -1
CCDC59-204ENST00000550589 ABCB7O75027 752 aa8.76□□□□□ -1.01
CCDC59-204ENST00000550589 ZBTB22O15209 634 aa8.75□□□□□ -1.01
CCDC59-204ENST00000550589 POTEMA6NI47 508 aa8.75□□□□□ -1.01
CCDC59-204ENST00000550589 TRHP20396 242 aaPredicted RBP8.7□□□□□ -1.02
CCDC59-204ENST00000550589 AKT1S1Q96B36 256 aa8.69□□□□□ -1.02
CCDC59-204ENST00000550589 POTEGQ6S5H5 508 aa8.66□□□□□ -1.02
CCDC59-204ENST00000550589 FOXD4L1Q9NU39 408 aa8.66□□□□□ -1.02
CCDC59-204ENST00000550589 EVX2Q03828 476 aa8.63□□□□□ -1.03
CCDC59-204ENST00000550589 FXR2P51116 673 aaKnown RBP eCLIP8.62□□□□□ -1.03
CCDC59-204ENST00000550589 GABBR2O75899 941 aa8.59□□□□□ -1.03
CCDC59-204ENST00000550589 CSRNP3Q8WYN3 585 aa8.58□□□□□ -1.04
CCDC59-204ENST00000550589 MYCNP04198 464 aaPredicted RBP8.57□□□□□ -1.04
CCDC59-204ENST00000550589 EHMT2Q96KQ7 1210 aa8.56□□□□□ -1.04
CCDC59-204ENST00000550589 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.48□□□□□ -1.05
CCDC59-204ENST00000550589 HNRNPUL2Q1KMD3 747 aaKnown RBP8.48□□□□□ -1.05
CCDC59-204ENST00000550589 SAMD1Q6SPF0 538 aaPredicted RBP8.48□□□□□ -1.05
CCDC59-204ENST00000550589 ATF5Q9Y2D1 282 aaPredicted RBP8.48□□□□□ -1.05
CCDC59-204ENST00000550589 REM2Q8IYK8 340 aaPredicted RBP8.48□□□□□ -1.05
CCDC59-204ENST00000550589 C19orf67A6NJJ6 358 aa8.41□□□□□ -1.06
CCDC59-204ENST00000550589 PITPNM1O00562 1244 aa8.37□□□□□ -1.07
CCDC59-204ENST00000550589 ATXN8OSP0DMR3 200 aa8.36□□□□□ -1.07
CCDC59-204ENST00000550589 CLCN6P51797 869 aa8.34□□□□□ -1.07
CCDC59-204ENST00000550589 OTUD5Q96G74 571 aa8.27□□□□□ -1.09
CCDC59-204ENST00000550589 POLA2Q14181 598 aa8.26□□□□□ -1.09
CCDC59-204ENST00000550589 POTEIP0CG38 1075 aa8.24□□□□□ -1.09
CCDC59-204ENST00000550589 DCBLD2Q96PD2 775 aa8.21□□□□□ -1.09
CCDC59-204ENST00000550589 PRKAR2AP13861 404 aaKnown RBP8.2□□□□□ -1.1
CCDC59-204ENST00000550589 ZBTB12Q9Y330 459 aaPredicted RBP8.17□□□□□ -1.1
CCDC59-204ENST00000550589 MKRN4PQ13434 485 aaPredicted RBP8.09□□□□□ -1.11
CCDC59-204ENST00000550589 CDAN1Q8IWY9 1227 aa8.04□□□□□ -1.12
CCDC59-204ENST00000550589 MAMSTRQ6ZN01 415 aa8.03□□□□□ -1.12
CCDC59-204ENST00000550589 FAM163AQ96GL9 167 aaPredicted RBP8.02□□□□□ -1.13
CCDC59-204ENST00000550589 MMRN1Q13201 1228 aa7.99□□□□□ -1.13
CCDC59-204ENST00000550589 OSCARQ8IYS5 282 aa7.99□□□□□ -1.13
CCDC59-204ENST00000550589 FBLN2P98095 1184 aa7.96□□□□□ -1.13
CCDC59-204ENST00000550589 LCE2DQ5TA82 110 aaPredicted RBP7.91□□□□□ -1.14
CCDC59-204ENST00000550589 POTEB2H3BUK9 544 aa7.89□□□□□ -1.15
CCDC59-204ENST00000550589 SPDYE1Q8NFV5 336 aaPredicted RBP7.89□□□□□ -1.15
CCDC59-204ENST00000550589 CD44P16070 742 aaKnown RBP7.88□□□□□ -1.15
CCDC59-204ENST00000550589 SPDYE2BA6NHP3 402 aa7.85□□□□□ -1.15
CCDC59-204ENST00000550589 SPDYE6P0CI01 402 aa7.85□□□□□ -1.15
CCDC59-204ENST00000550589 SPDYE2Q495Y8 402 aa7.85□□□□□ -1.15
CCDC59-204ENST00000550589 SPNS2Q8IVW8 549 aa7.85□□□□□ -1.15
CCDC59-204ENST00000550589 SCUBE2Q9NQ36 999 aa7.84□□□□□ -1.16
CCDC59-204ENST00000550589 SSUH2Q9Y2M2 353 aa7.83□□□□□ -1.16
CCDC59-204ENST00000550589 CLEC11AQ9Y240 323 aa7.82□□□□□ -1.16
CCDC59-204ENST00000550589 ZNF692Q9BU19 519 aaPredicted RBP7.81□□□□□ -1.16
CCDC59-204ENST00000550589 SPDYE4A6NLX3 237 aa7.77□□□□□ -1.17
CCDC59-204ENST00000550589 CCDC180Q9P1Z9 1646 aa7.73□□□□□ -1.17
CCDC59-204ENST00000550589 PABPN1Q86U42 306 aaKnown RBP eCLIP7.73□□□□□ -1.17
CCDC59-204ENST00000550589 ZNF579Q8NAF0 562 aaKnown RBP7.72□□□□□ -1.17
CCDC59-204ENST00000550589 FKBP8Q14318 412 aa7.7□□□□□ -1.18
CCDC59-204ENST00000550589 PROM2Q8N271 834 aa7.7□□□□□ -1.18
CCDC59-204ENST00000550589 CHADLQ6NUI6 762 aa7.67□□□□□ -1.18
CCDC59-204ENST00000550589 C7P10643 843 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms