RNA–Protein interactions for RNA: ENST00000546873.1

CHPT1-203, Transcript of choline phosphotransferase 1, humanhuman

TSL 3

Gene CHPT1, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPT1-203ENST00000546873 AEBP2Q6ZN18 517 aaPredicted RBP33.56■■■□□ 2.96
CHPT1-203ENST00000546873 CHIC1Q5VXU3 224 aa32.46■■■□□ 2.79
CHPT1-203ENST00000546873 SENP3Q9H4L4 574 aaPredicted RBP28.74■■■□□ 2.19
CHPT1-203ENST00000546873 PHF23Q9BUL5 403 aaPredicted RBP28.39■■■□□ 2.14
CHPT1-203ENST00000546873 FOXD1Q16676 465 aa26.61■■□□□ 1.85
CHPT1-203ENST00000546873 PLPPR3Q6T4P5 718 aa26.24■■□□□ 1.79
CHPT1-203ENST00000546873 ADRA2BP18089 450 aa25.22■■□□□ 1.63
CHPT1-203ENST00000546873 PPP6R1Q9UPN7 881 aa25.2■■□□□ 1.62
CHPT1-203ENST00000546873 PIAS4Q8N2W9 510 aaPredicted RBP25.07■■□□□ 1.6
CHPT1-203ENST00000546873 MSH5O43196 834 aa24.85■■□□□ 1.57
CHPT1-203ENST00000546873 POTEDQ86YR6 584 aa23.3■■□□□ 1.32
CHPT1-203ENST00000546873 SCAF1Q9H7N4 1312 aaKnown RBP23.28■■□□□ 1.32
CHPT1-203ENST00000546873 PPP4R3CPQ6ZMV5 832 aa23.02■■□□□ 1.28
CHPT1-203ENST00000546873 MAPK8IP2Q13387 824 aaPredicted RBP22.98■■□□□ 1.27
CHPT1-203ENST00000546873 DMRT2Q9Y5R5 561 aa22.81■■□□□ 1.24
CHPT1-203ENST00000546873 CNKSR2Q8WXI2 1034 aa22.51■■□□□ 1.19
CHPT1-203ENST00000546873 NCBP3Q53F19 620 aaKnown RBP22.42■■□□□ 1.18
CHPT1-203ENST00000546873 RNF216Q9NWF9 866 aaPredicted RBP22.16■■□□□ 1.14
CHPT1-203ENST00000546873 HOXD11P31277 338 aaPredicted RBP22.14■■□□□ 1.13
CHPT1-203ENST00000546873 DCAF8L1A6NGE4 600 aa21.97■■□□□ 1.11
CHPT1-203ENST00000546873 KCNA4P22459 653 aa21.93■■□□□ 1.1
CHPT1-203ENST00000546873 NPM3O75607 178 aaKnown RBP21.92■■□□□ 1.1
CHPT1-203ENST00000546873 DNAJC5BQ9UF47 199 aa21.35■■□□□ 1.01
CHPT1-203ENST00000546873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.23■□□□□ 0.99
CHPT1-203ENST00000546873 RNF39Q9H2S5 420 aa21.16■□□□□ 0.98
CHPT1-203ENST00000546873 CACNB1Q02641 598 aaPredicted RBP21.04■□□□□ 0.96
CHPT1-203ENST00000546873 C1QBPQ07021 282 aaKnown RBP20.96■□□□□ 0.95
CHPT1-203ENST00000546873 SLC4A1APQ9BWU0 796 aaKnown RBP20.9■□□□□ 0.94
CHPT1-203ENST00000546873 SLC4A2P04920 1241 aa20.76■□□□□ 0.91
CHPT1-203ENST00000546873 U3KPZ7 1027 aaPredicted RBP20.7■□□□□ 0.9
CHPT1-203ENST00000546873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.48■□□□□ 0.87
CHPT1-203ENST00000546873 HNRNPUL2Q1KMD3 747 aaKnown RBP20.48■□□□□ 0.87
CHPT1-203ENST00000546873 APLP2Q06481 763 aa20.43■□□□□ 0.86
CHPT1-203ENST00000546873 FOXD4L1Q9NU39 408 aa20.39■□□□□ 0.85
CHPT1-203ENST00000546873 MYCNP04198 464 aaPredicted RBP20.36■□□□□ 0.85
CHPT1-203ENST00000546873 SAMD1Q6SPF0 538 aaPredicted RBP20.34■□□□□ 0.85
CHPT1-203ENST00000546873 CAPN15O75808 1086 aa20.32■□□□□ 0.84
CHPT1-203ENST00000546873 SPINK5Q9NQ38 1064 aaPredicted RBP20.25■□□□□ 0.83
CHPT1-203ENST00000546873 ZNF219Q9P2Y4 722 aaPredicted RBP20.12■□□□□ 0.81
CHPT1-203ENST00000546873 TRHP20396 242 aaPredicted RBP20.1■□□□□ 0.81
CHPT1-203ENST00000546873 ZBTB22O15209 634 aa20.08■□□□□ 0.81
CHPT1-203ENST00000546873 DSG3P32926 999 aa19.97■□□□□ 0.79
CHPT1-203ENST00000546873 ABCB7O75027 752 aa19.83■□□□□ 0.77
CHPT1-203ENST00000546873 EHMT2Q96KQ7 1210 aa19.77■□□□□ 0.76
CHPT1-203ENST00000546873 ATXN8OSP0DMR3 200 aa19.75■□□□□ 0.75
CHPT1-203ENST00000546873 ATF5Q9Y2D1 282 aaPredicted RBP19.68■□□□□ 0.74
CHPT1-203ENST00000546873 CSRNP3Q8WYN3 585 aa19.67■□□□□ 0.74
CHPT1-203ENST00000546873 POLA2Q14181 598 aa19.63■□□□□ 0.73
CHPT1-203ENST00000546873 ZBTB12Q9Y330 459 aaPredicted RBP19.4■□□□□ 0.7
CHPT1-203ENST00000546873 RBM42Q9BTD8 480 aaKnown RBP19.2■□□□□ 0.66
CHPT1-203ENST00000546873 FBLN2P98095 1184 aa19.13■□□□□ 0.65
CHPT1-203ENST00000546873 OSCARQ8IYS5 282 aa18.95■□□□□ 0.62
CHPT1-203ENST00000546873 MKRN4PQ13434 485 aaPredicted RBP18.83■□□□□ 0.6
CHPT1-203ENST00000546873 AKT1S1Q96B36 256 aa18.8■□□□□ 0.6
CHPT1-203ENST00000546873 SPDYE2BA6NHP3 402 aa18.77■□□□□ 0.6
CHPT1-203ENST00000546873 SPDYE6P0CI01 402 aa18.77■□□□□ 0.6
CHPT1-203ENST00000546873 SPDYE2Q495Y8 402 aa18.77■□□□□ 0.6
CHPT1-203ENST00000546873 ZNF692Q9BU19 519 aaPredicted RBP18.63■□□□□ 0.57
CHPT1-203ENST00000546873 REM2Q8IYK8 340 aaPredicted RBP18.58■□□□□ 0.56
CHPT1-203ENST00000546873 CHRDL2Q6WN34 429 aa18.49■□□□□ 0.55
CHPT1-203ENST00000546873 SSUH2Q9Y2M2 353 aa18.49■□□□□ 0.55
CHPT1-203ENST00000546873 POTEHQ6S545 545 aa18.4■□□□□ 0.54
CHPT1-203ENST00000546873 PITPNM1O00562 1244 aa18.35■□□□□ 0.53
CHPT1-203ENST00000546873 SPDYE1Q8NFV5 336 aaPredicted RBP18.35■□□□□ 0.53
CHPT1-203ENST00000546873 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
CHPT1-203ENST00000546873 SPDYE4A6NLX3 237 aa18.32■□□□□ 0.52
CHPT1-203ENST00000546873 CLEC11AQ9Y240 323 aa18.28■□□□□ 0.52
CHPT1-203ENST00000546873 PIP4P2Q8N4L2 257 aa18.12■□□□□ 0.49
CHPT1-203ENST00000546873 FXR2P51116 673 aaKnown RBP eCLIP18.08■□□□□ 0.48
CHPT1-203ENST00000546873 PRR29P0C7W0 189 aa18.06■□□□□ 0.48
CHPT1-203ENST00000546873 STAG3Q9UJ98 1225 aa18.05■□□□□ 0.48
CHPT1-203ENST00000546873 PRKAR2AP13861 404 aaKnown RBP17.93■□□□□ 0.46
CHPT1-203ENST00000546873 FKBP8Q14318 412 aa17.9■□□□□ 0.46
CHPT1-203ENST00000546873 PROM2Q8N271 834 aa17.84■□□□□ 0.45
CHPT1-203ENST00000546873 CHADLQ6NUI6 762 aa17.79■□□□□ 0.44
CHPT1-203ENST00000546873 HAX1O00165 279 aa17.75■□□□□ 0.43
CHPT1-203ENST00000546873 CREBZFQ9NS37 354 aa17.61■□□□□ 0.41
CHPT1-203ENST00000546873 FARP1Q9Y4F1 1045 aaPredicted RBP17.61■□□□□ 0.41
CHPT1-203ENST00000546873 PLEKHG5O94827 1062 aa17.55■□□□□ 0.4
CHPT1-203ENST00000546873 FBXO3Q9UK99 471 aa17.5■□□□□ 0.39
CHPT1-203ENST00000546873 C19orf67A6NJJ6 358 aa17.49■□□□□ 0.39
CHPT1-203ENST00000546873 SP7Q8TDD2 431 aaPredicted RBP17.49■□□□□ 0.39
CHPT1-203ENST00000546873 MIER1Q8N108 512 aa17.48■□□□□ 0.39
CHPT1-203ENST00000546873 NPM1P06748 294 aaKnown RBP eCLIP17.47■□□□□ 0.39
CHPT1-203ENST00000546873 PLCD3Q8N3E9 789 aa17.43■□□□□ 0.38
CHPT1-203ENST00000546873 CD44P16070 742 aaKnown RBP17.41■□□□□ 0.38
CHPT1-203ENST00000546873 EVX2Q03828 476 aa17.38■□□□□ 0.37
CHPT1-203ENST00000546873 PAK3O75914 559 aaPredicted RBP17.33■□□□□ 0.36
CHPT1-203ENST00000546873 MNX1P50219 401 aaPredicted RBP17.32■□□□□ 0.36
CHPT1-203ENST00000546873 ZBTB47Q9UFB7 747 aaPredicted RBP17.31■□□□□ 0.36
CHPT1-203ENST00000546873 ZRANB1Q9UGI0 708 aa17.25■□□□□ 0.35
CHPT1-203ENST00000546873 VASPP50552 380 aaPredicted RBP17.17■□□□□ 0.34
CHPT1-203ENST00000546873 CLCN6P51797 869 aa17.16■□□□□ 0.34
CHPT1-203ENST00000546873 ZNF579Q8NAF0 562 aaKnown RBP17.13■□□□□ 0.33
CHPT1-203ENST00000546873 GABBR2O75899 941 aa17.12■□□□□ 0.33
CHPT1-203ENST00000546873 KLHL34Q8N239 644 aa17.09■□□□□ 0.33
CHPT1-203ENST00000546873 TSPYL2Q9H2G4 693 aaPredicted RBP17.09■□□□□ 0.33
CHPT1-203ENST00000546873 RASEFQ8IZ41 740 aa16.99■□□□□ 0.31
CHPT1-203ENST00000546873 PHF12Q96QT6 1004 aa16.98■□□□□ 0.31
CHPT1-203ENST00000546873 FAM212AQ96EL1 285 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms