RNA–Protein interactions for RNA: ENST00000545026.1

LEMD3-206, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-206ENST00000545026 AEBP2Q6ZN18 517 aaPredicted RBP28.03■■■□□ 2.08
LEMD3-206ENST00000545026 CHIC1Q5VXU3 224 aa27.92■■■□□ 2.06
LEMD3-206ENST00000545026 PHF23Q9BUL5 403 aaPredicted RBP24.65■■□□□ 1.54
LEMD3-206ENST00000545026 SENP3Q9H4L4 574 aaPredicted RBP23.62■■□□□ 1.37
LEMD3-206ENST00000545026 PLPPR3Q6T4P5 718 aa22.9■■□□□ 1.26
LEMD3-206ENST00000545026 FOXD1Q16676 465 aa21.89■■□□□ 1.09
LEMD3-206ENST00000545026 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
LEMD3-206ENST00000545026 ADRA2BP18089 450 aa21.55■■□□□ 1.04
LEMD3-206ENST00000545026 PIAS4Q8N2W9 510 aaPredicted RBP20.74■□□□□ 0.91
LEMD3-206ENST00000545026 KCNA4P22459 653 aa20.5■□□□□ 0.87
LEMD3-206ENST00000545026 PPP4R3CPQ6ZMV5 832 aa20.28■□□□□ 0.84
LEMD3-206ENST00000545026 MSH5O43196 834 aa19.9■□□□□ 0.78
LEMD3-206ENST00000545026 NCBP3Q53F19 620 aaKnown RBP19.87■□□□□ 0.77
LEMD3-206ENST00000545026 EHMT2Q96KQ7 1210 aa19.71■□□□□ 0.75
LEMD3-206ENST00000545026 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
LEMD3-206ENST00000545026 NPM3O75607 178 aaKnown RBP19.63■□□□□ 0.73
LEMD3-206ENST00000545026 SLC4A1APQ9BWU0 796 aaKnown RBP19.59■□□□□ 0.73
LEMD3-206ENST00000545026 CNKSR2Q8WXI2 1034 aa19.56■□□□□ 0.72
LEMD3-206ENST00000545026 MAPK8IP2Q13387 824 aaPredicted RBP19.39■□□□□ 0.69
LEMD3-206ENST00000545026 CSRNP3Q8WYN3 585 aa19.26■□□□□ 0.67
LEMD3-206ENST00000545026 RNF216Q9NWF9 866 aaPredicted RBP19.04■□□□□ 0.64
LEMD3-206ENST00000545026 DNAJC5BQ9UF47 199 aa19.01■□□□□ 0.63
LEMD3-206ENST00000545026 DMRT2Q9Y5R5 561 aa18.97■□□□□ 0.63
LEMD3-206ENST00000545026 ZBTB22O15209 634 aa18.91■□□□□ 0.62
LEMD3-206ENST00000545026 HOXD11P31277 338 aaPredicted RBP18.83■□□□□ 0.6
LEMD3-206ENST00000545026 FOXD4L1Q9NU39 408 aa18.66■□□□□ 0.58
LEMD3-206ENST00000545026 POTEDQ86YR6 584 aa18.65■□□□□ 0.58
LEMD3-206ENST00000545026 SLC4A2P04920 1241 aa18.43■□□□□ 0.54
LEMD3-206ENST00000545026 MYCNP04198 464 aaPredicted RBP18.1■□□□□ 0.49
LEMD3-206ENST00000545026 DCAF8L1A6NGE4 600 aa18.06■□□□□ 0.48
LEMD3-206ENST00000545026 ATXN8OSP0DMR3 200 aa17.97■□□□□ 0.47
LEMD3-206ENST00000545026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.9■□□□□ 0.46
LEMD3-206ENST00000545026 U3KPZ7 1027 aaPredicted RBP17.72■□□□□ 0.43
LEMD3-206ENST00000545026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.63■□□□□ 0.41
LEMD3-206ENST00000545026 HNRNPUL2Q1KMD3 747 aaKnown RBP17.63■□□□□ 0.41
LEMD3-206ENST00000545026 ATF5Q9Y2D1 282 aaPredicted RBP17.63■□□□□ 0.41
LEMD3-206ENST00000545026 SAMD1Q6SPF0 538 aaPredicted RBP17.62■□□□□ 0.41
LEMD3-206ENST00000545026 FKBP8Q14318 412 aa17.33■□□□□ 0.36
LEMD3-206ENST00000545026 APLP2Q06481 763 aa17.28■□□□□ 0.36
LEMD3-206ENST00000545026 ZNF219Q9P2Y4 722 aaPredicted RBP17.25■□□□□ 0.35
LEMD3-206ENST00000545026 RNF39Q9H2S5 420 aa17.15■□□□□ 0.34
LEMD3-206ENST00000545026 SPINK5Q9NQ38 1064 aaPredicted RBP17.05■□□□□ 0.32
LEMD3-206ENST00000545026 TRHP20396 242 aaPredicted RBP16.97■□□□□ 0.31
LEMD3-206ENST00000545026 C1QBPQ07021 282 aaKnown RBP16.96■□□□□ 0.31
LEMD3-206ENST00000545026 CAPN15O75808 1086 aa16.89■□□□□ 0.29
LEMD3-206ENST00000545026 MKRN4PQ13434 485 aaPredicted RBP16.89■□□□□ 0.29
LEMD3-206ENST00000545026 POLA2Q14181 598 aa16.85■□□□□ 0.29
LEMD3-206ENST00000545026 RTN4Q9NQC3 1192 aaKnown RBP16.84■□□□□ 0.29
LEMD3-206ENST00000545026 AMER1Q5JTC6 1135 aaPredicted RBP16.82■□□□□ 0.28
LEMD3-206ENST00000545026 FBLN2P98095 1184 aa16.76■□□□□ 0.27
LEMD3-206ENST00000545026 SPDYE4A6NLX3 237 aa16.75■□□□□ 0.27
LEMD3-206ENST00000545026 ABCB7O75027 752 aa16.66■□□□□ 0.26
LEMD3-206ENST00000545026 PROM2Q8N271 834 aa16.62■□□□□ 0.25
LEMD3-206ENST00000545026 ZBTB12Q9Y330 459 aaPredicted RBP16.58■□□□□ 0.24
LEMD3-206ENST00000545026 FBXO3Q9UK99 471 aa16.53■□□□□ 0.24
LEMD3-206ENST00000545026 DSG3P32926 999 aa16.52■□□□□ 0.24
LEMD3-206ENST00000545026 VASPP50552 380 aaPredicted RBP16.32■□□□□ 0.2
LEMD3-206ENST00000545026 OSCARQ8IYS5 282 aa16.26■□□□□ 0.19
LEMD3-206ENST00000545026 CACNB1Q02641 598 aaPredicted RBP16.24■□□□□ 0.19
LEMD3-206ENST00000545026 ZNF692Q9BU19 519 aaPredicted RBP16.23■□□□□ 0.19
LEMD3-206ENST00000545026 SPDYE2BA6NHP3 402 aa16.22■□□□□ 0.19
LEMD3-206ENST00000545026 SPDYE6P0CI01 402 aa16.22■□□□□ 0.19
LEMD3-206ENST00000545026 SPDYE2Q495Y8 402 aa16.22■□□□□ 0.19
LEMD3-206ENST00000545026 SSUH2Q9Y2M2 353 aa16.18■□□□□ 0.18
LEMD3-206ENST00000545026 IFNLR1Q8IU57 520 aaPredicted RBP16.17■□□□□ 0.18
LEMD3-206ENST00000545026 SLC24A1O60721 1099 aa16.15■□□□□ 0.18
LEMD3-206ENST00000545026 PABPN1Q86U42 306 aaKnown RBP eCLIP16.05■□□□□ 0.16
LEMD3-206ENST00000545026 STAG3Q9UJ98 1225 aa16.01■□□□□ 0.15
LEMD3-206ENST00000545026 KLHL34Q8N239 644 aa15.87■□□□□ 0.13
LEMD3-206ENST00000545026 PKD2Q13563 968 aa15.86■□□□□ 0.13
LEMD3-206ENST00000545026 SPOCK2Q92563 424 aa15.85■□□□□ 0.13
LEMD3-206ENST00000545026 PLCD3Q8N3E9 789 aa15.84■□□□□ 0.13
LEMD3-206ENST00000545026 MIER1Q8N108 512 aa15.8■□□□□ 0.12
LEMD3-206ENST00000545026 RBM42Q9BTD8 480 aaKnown RBP15.67■□□□□ 0.1
LEMD3-206ENST00000545026 DCAF8L2P0C7V8 631 aa15.65■□□□□ 0.1
LEMD3-206ENST00000545026 AKT1S1Q96B36 256 aa15.65■□□□□ 0.1
LEMD3-206ENST00000545026 PLEKHG5O94827 1062 aa15.63■□□□□ 0.09
LEMD3-206ENST00000545026 ECM2O94769 699 aaPredicted RBP15.61■□□□□ 0.09
LEMD3-206ENST00000545026 ZBTB47Q9UFB7 747 aaPredicted RBP15.6■□□□□ 0.09
LEMD3-206ENST00000545026 SPDYE1Q8NFV5 336 aaPredicted RBP15.58■□□□□ 0.08
LEMD3-206ENST00000545026 PLCB2Q00722 1185 aa15.57■□□□□ 0.08
LEMD3-206ENST00000545026 REM2Q8IYK8 340 aaPredicted RBP15.51■□□□□ 0.07
LEMD3-206ENST00000545026 RGL2O15211 777 aa15.48■□□□□ 0.07
LEMD3-206ENST00000545026 CIZ1Q9ULV3 898 aaPredicted RBP15.47■□□□□ 0.07
LEMD3-206ENST00000545026 CLEC11AQ9Y240 323 aa15.47■□□□□ 0.07
LEMD3-206ENST00000545026 PRR29P0C7W0 189 aa15.42■□□□□ 0.06
LEMD3-206ENST00000545026 NPM1P06748 294 aaKnown RBP eCLIP15.41■□□□□ 0.06
LEMD3-206ENST00000545026 CREBZFQ9NS37 354 aa15.41■□□□□ 0.06
LEMD3-206ENST00000545026 NUBP1P53384 320 aa15.39■□□□□ 0.05
LEMD3-206ENST00000545026 TRIM41Q8WV44 630 aa15.36■□□□□ 0.05
LEMD3-206ENST00000545026 BBXQ8WY36 941 aaPredicted RBP15.36■□□□□ 0.05
LEMD3-206ENST00000545026 MNX1P50219 401 aaPredicted RBP15.34■□□□□ 0.05
LEMD3-206ENST00000545026 GSE1Q14687 1217 aa15.33■□□□□ 0.04
LEMD3-206ENST00000545026 PITPNM1O00562 1244 aa15.32■□□□□ 0.04
LEMD3-206ENST00000545026 HAP1P54257 671 aaPredicted RBP15.31■□□□□ 0.04
LEMD3-206ENST00000545026 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.28■□□□□ 0.04
LEMD3-206ENST00000545026 DCAF8Q5TAQ9 597 aa15.25■□□□□ 0.03
LEMD3-206ENST00000545026 RNF25Q96BH1 459 aaPredicted RBP15.22■□□□□ 0.03
LEMD3-206ENST00000545026 CHGAP10645 457 aaKnown RBP15.21■□□□□ 0.03
LEMD3-206ENST00000545026 PAXIP1Q6ZW49 1069 aaPredicted RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms