RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 AEBP2Q6ZN18 517 aaPredicted RBP30.54■■■□□ 2.48
XRCC4-206ENST00000542685 CHIC1Q5VXU3 224 aa29.4■■■□□ 2.3
XRCC4-206ENST00000542685 SENP3Q9H4L4 574 aaPredicted RBP25.96■■□□□ 1.75
XRCC4-206ENST00000542685 PHF23Q9BUL5 403 aaPredicted RBP25.82■■□□□ 1.72
XRCC4-206ENST00000542685 FOXD1Q16676 465 aa24.17■■□□□ 1.46
XRCC4-206ENST00000542685 PLPPR3Q6T4P5 718 aa23.7■■□□□ 1.38
XRCC4-206ENST00000542685 PPP6R1Q9UPN7 881 aa22.95■■□□□ 1.26
XRCC4-206ENST00000542685 ADRA2BP18089 450 aa22.91■■□□□ 1.26
XRCC4-206ENST00000542685 PIAS4Q8N2W9 510 aaPredicted RBP22.71■■□□□ 1.23
XRCC4-206ENST00000542685 MSH5O43196 834 aa22.43■■□□□ 1.18
XRCC4-206ENST00000542685 POTEDQ86YR6 584 aa21.17■□□□□ 0.98
XRCC4-206ENST00000542685 MAPK8IP2Q13387 824 aaPredicted RBP20.93■□□□□ 0.94
XRCC4-206ENST00000542685 SCAF1Q9H7N4 1312 aaKnown RBP20.93■□□□□ 0.94
XRCC4-206ENST00000542685 PPP4R3CPQ6ZMV5 832 aa20.85■□□□□ 0.93
XRCC4-206ENST00000542685 DMRT2Q9Y5R5 561 aa20.65■□□□□ 0.9
XRCC4-206ENST00000542685 CNKSR2Q8WXI2 1034 aa20.33■□□□□ 0.85
XRCC4-206ENST00000542685 NCBP3Q53F19 620 aaKnown RBP20.17■□□□□ 0.82
XRCC4-206ENST00000542685 HOXD11P31277 338 aaPredicted RBP20.05■□□□□ 0.8
XRCC4-206ENST00000542685 RNF216Q9NWF9 866 aaPredicted RBP20.03■□□□□ 0.8
XRCC4-206ENST00000542685 KCNA4P22459 653 aa19.91■□□□□ 0.78
XRCC4-206ENST00000542685 DCAF8L1A6NGE4 600 aa19.88■□□□□ 0.77
XRCC4-206ENST00000542685 NPM3O75607 178 aaKnown RBP19.88■□□□□ 0.77
XRCC4-206ENST00000542685 DNAJC5BQ9UF47 199 aa19.25■□□□□ 0.67
XRCC4-206ENST00000542685 RNF39Q9H2S5 420 aa19.18■□□□□ 0.66
XRCC4-206ENST00000542685 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.17■□□□□ 0.66
XRCC4-206ENST00000542685 CACNB1Q02641 598 aaPredicted RBP19.03■□□□□ 0.64
XRCC4-206ENST00000542685 C1QBPQ07021 282 aaKnown RBP18.92■□□□□ 0.62
XRCC4-206ENST00000542685 SLC4A1APQ9BWU0 796 aaKnown RBP18.88■□□□□ 0.61
XRCC4-206ENST00000542685 SLC4A2P04920 1241 aa18.87■□□□□ 0.61
XRCC4-206ENST00000542685 U3KPZ7 1027 aaPredicted RBP18.78■□□□□ 0.6
XRCC4-206ENST00000542685 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
XRCC4-206ENST00000542685 FOXD4L1Q9NU39 408 aa18.41■□□□□ 0.54
XRCC4-206ENST00000542685 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.39■□□□□ 0.53
XRCC4-206ENST00000542685 HNRNPUL2Q1KMD3 747 aaKnown RBP18.39■□□□□ 0.53
XRCC4-206ENST00000542685 CAPN15O75808 1086 aa18.37■□□□□ 0.53
XRCC4-206ENST00000542685 MYCNP04198 464 aaPredicted RBP18.36■□□□□ 0.53
XRCC4-206ENST00000542685 SAMD1Q6SPF0 538 aaPredicted RBP18.31■□□□□ 0.52
XRCC4-206ENST00000542685 ZBTB22O15209 634 aa18.3■□□□□ 0.52
XRCC4-206ENST00000542685 APLP2Q06481 763 aa18.29■□□□□ 0.52
XRCC4-206ENST00000542685 TRHP20396 242 aaPredicted RBP18.2■□□□□ 0.5
XRCC4-206ENST00000542685 DSG3P32926 999 aa18.12■□□□□ 0.49
XRCC4-206ENST00000542685 ZNF219Q9P2Y4 722 aaPredicted RBP18.12■□□□□ 0.49
XRCC4-206ENST00000542685 ABCB7O75027 752 aa18■□□□□ 0.47
XRCC4-206ENST00000542685 ATF5Q9Y2D1 282 aaPredicted RBP17.94■□□□□ 0.46
XRCC4-206ENST00000542685 EHMT2Q96KQ7 1210 aa17.92■□□□□ 0.46
XRCC4-206ENST00000542685 CSRNP3Q8WYN3 585 aa17.85■□□□□ 0.45
XRCC4-206ENST00000542685 POLA2Q14181 598 aa17.79■□□□□ 0.44
XRCC4-206ENST00000542685 ATXN8OSP0DMR3 200 aa17.77■□□□□ 0.44
XRCC4-206ENST00000542685 ZBTB12Q9Y330 459 aaPredicted RBP17.41■□□□□ 0.38
XRCC4-206ENST00000542685 RBM42Q9BTD8 480 aaKnown RBP17.26■□□□□ 0.35
XRCC4-206ENST00000542685 FBLN2P98095 1184 aa17.21■□□□□ 0.35
XRCC4-206ENST00000542685 OSCARQ8IYS5 282 aa17.2■□□□□ 0.34
XRCC4-206ENST00000542685 MKRN4PQ13434 485 aaPredicted RBP17.12■□□□□ 0.33
XRCC4-206ENST00000542685 AKT1S1Q96B36 256 aa16.96■□□□□ 0.31
XRCC4-206ENST00000542685 SPDYE2BA6NHP3 402 aa16.91■□□□□ 0.3
XRCC4-206ENST00000542685 SPDYE6P0CI01 402 aa16.91■□□□□ 0.3
XRCC4-206ENST00000542685 SPDYE2Q495Y8 402 aa16.91■□□□□ 0.3
XRCC4-206ENST00000542685 REM2Q8IYK8 340 aaPredicted RBP16.83■□□□□ 0.28
XRCC4-206ENST00000542685 ZNF692Q9BU19 519 aaPredicted RBP16.83■□□□□ 0.28
XRCC4-206ENST00000542685 CHRDL2Q6WN34 429 aa16.74■□□□□ 0.27
XRCC4-206ENST00000542685 SSUH2Q9Y2M2 353 aa16.73■□□□□ 0.27
XRCC4-206ENST00000542685 POTEHQ6S545 545 aa16.69■□□□□ 0.26
XRCC4-206ENST00000542685 PITPNM1O00562 1244 aa16.64■□□□□ 0.25
XRCC4-206ENST00000542685 PABPN1Q86U42 306 aaKnown RBP eCLIP16.6■□□□□ 0.25
XRCC4-206ENST00000542685 SPDYE4A6NLX3 237 aa16.56■□□□□ 0.24
XRCC4-206ENST00000542685 CLEC11AQ9Y240 323 aa16.54■□□□□ 0.24
XRCC4-206ENST00000542685 SPDYE1Q8NFV5 336 aaPredicted RBP16.53■□□□□ 0.24
XRCC4-206ENST00000542685 PIP4P2Q8N4L2 257 aa16.44■□□□□ 0.22
XRCC4-206ENST00000542685 FXR2P51116 673 aaKnown RBP eCLIP16.38■□□□□ 0.21
XRCC4-206ENST00000542685 PRR29P0C7W0 189 aa16.3■□□□□ 0.2
XRCC4-206ENST00000542685 PRKAR2AP13861 404 aaKnown RBP16.23■□□□□ 0.19
XRCC4-206ENST00000542685 FKBP8Q14318 412 aa16.19■□□□□ 0.18
XRCC4-206ENST00000542685 STAG3Q9UJ98 1225 aa16.19■□□□□ 0.18
XRCC4-206ENST00000542685 CHADLQ6NUI6 762 aa16.16■□□□□ 0.18
XRCC4-206ENST00000542685 PROM2Q8N271 834 aa16.15■□□□□ 0.18
XRCC4-206ENST00000542685 HAX1O00165 279 aa16.06■□□□□ 0.16
XRCC4-206ENST00000542685 CREBZFQ9NS37 354 aa15.97■□□□□ 0.15
XRCC4-206ENST00000542685 FARP1Q9Y4F1 1045 aaPredicted RBP15.94■□□□□ 0.14
XRCC4-206ENST00000542685 EVX2Q03828 476 aa15.87■□□□□ 0.13
XRCC4-206ENST00000542685 C19orf67A6NJJ6 358 aa15.84■□□□□ 0.13
XRCC4-206ENST00000542685 SP7Q8TDD2 431 aaPredicted RBP15.84■□□□□ 0.13
XRCC4-206ENST00000542685 MIER1Q8N108 512 aa15.77■□□□□ 0.12
XRCC4-206ENST00000542685 CD44P16070 742 aaKnown RBP15.74■□□□□ 0.11
XRCC4-206ENST00000542685 MNX1P50219 401 aaPredicted RBP15.73■□□□□ 0.11
XRCC4-206ENST00000542685 PLEKHG5O94827 1062 aa15.7■□□□□ 0.1
XRCC4-206ENST00000542685 PLCD3Q8N3E9 789 aa15.7■□□□□ 0.1
XRCC4-206ENST00000542685 NPM1P06748 294 aaKnown RBP eCLIP15.69■□□□□ 0.1
XRCC4-206ENST00000542685 FBXO3Q9UK99 471 aa15.69■□□□□ 0.1
XRCC4-206ENST00000542685 ZRANB1Q9UGI0 708 aa15.6■□□□□ 0.09
XRCC4-206ENST00000542685 PAK3O75914 559 aaPredicted RBP15.56■□□□□ 0.08
XRCC4-206ENST00000542685 GABBR2O75899 941 aa15.53■□□□□ 0.08
XRCC4-206ENST00000542685 VASPP50552 380 aaPredicted RBP15.5■□□□□ 0.07
XRCC4-206ENST00000542685 ZBTB47Q9UFB7 747 aaPredicted RBP15.5■□□□□ 0.07
XRCC4-206ENST00000542685 ZNF579Q8NAF0 562 aaKnown RBP15.48■□□□□ 0.07
XRCC4-206ENST00000542685 TSPYL2Q9H2G4 693 aaPredicted RBP15.47■□□□□ 0.07
XRCC4-206ENST00000542685 PHF12Q96QT6 1004 aa15.42■□□□□ 0.06
XRCC4-206ENST00000542685 RASEFQ8IZ41 740 aa15.41■□□□□ 0.06
XRCC4-206ENST00000542685 KLHL34Q8N239 644 aa15.38■□□□□ 0.05
XRCC4-206ENST00000542685 CLCN6P51797 869 aa15.37■□□□□ 0.05
XRCC4-206ENST00000542685 NUBP1P53384 320 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms