RNA–Protein interactions for RNA: ENST00000542199.1

MRPS35-204, Transcript of mitochondrial ribosomal protein S35, humanhuman

TSL 3

Gene MRPS35, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS35-204ENST00000542199 AEBP2Q6ZN18 517 aaPredicted RBP36.28■■■■□ 3.4
MRPS35-204ENST00000542199 CHIC1Q5VXU3 224 aa35.79■■■■□ 3.32
MRPS35-204ENST00000542199 PHF23Q9BUL5 403 aaPredicted RBP31.61■■■□□ 2.65
MRPS35-204ENST00000542199 SENP3Q9H4L4 574 aaPredicted RBP30.56■■■□□ 2.48
MRPS35-204ENST00000542199 PLPPR3Q6T4P5 718 aa29.22■■■□□ 2.27
MRPS35-204ENST00000542199 FOXD1Q16676 465 aa28.4■■■□□ 2.14
MRPS35-204ENST00000542199 PPP6R1Q9UPN7 881 aa27.75■■■□□ 2.03
MRPS35-204ENST00000542199 ADRA2BP18089 450 aa27.74■■■□□ 2.03
MRPS35-204ENST00000542199 PIAS4Q8N2W9 510 aaPredicted RBP26.87■■□□□ 1.89
MRPS35-204ENST00000542199 MSH5O43196 834 aa25.88■■□□□ 1.73
MRPS35-204ENST00000542199 KCNA4P22459 653 aa25.88■■□□□ 1.73
MRPS35-204ENST00000542199 PPP4R3CPQ6ZMV5 832 aa25.87■■□□□ 1.73
MRPS35-204ENST00000542199 NCBP3Q53F19 620 aaKnown RBP25.22■■□□□ 1.63
MRPS35-204ENST00000542199 SCAF1Q9H7N4 1312 aaKnown RBP25.18■■□□□ 1.62
MRPS35-204ENST00000542199 MAPK8IP2Q13387 824 aaPredicted RBP25.05■■□□□ 1.6
MRPS35-204ENST00000542199 NPM3O75607 178 aaKnown RBP24.99■■□□□ 1.59
MRPS35-204ENST00000542199 CNKSR2Q8WXI2 1034 aa24.98■■□□□ 1.59
MRPS35-204ENST00000542199 SLC4A1APQ9BWU0 796 aaKnown RBP24.67■■□□□ 1.54
MRPS35-204ENST00000542199 EHMT2Q96KQ7 1210 aa24.6■■□□□ 1.53
MRPS35-204ENST00000542199 DMRT2Q9Y5R5 561 aa24.5■■□□□ 1.51
MRPS35-204ENST00000542199 RNF216Q9NWF9 866 aaPredicted RBP24.38■■□□□ 1.49
MRPS35-204ENST00000542199 HOXD11P31277 338 aaPredicted RBP24.17■■□□□ 1.46
MRPS35-204ENST00000542199 CSRNP3Q8WYN3 585 aa24.06■■□□□ 1.44
MRPS35-204ENST00000542199 DNAJC5BQ9UF47 199 aa24.06■■□□□ 1.44
MRPS35-204ENST00000542199 ZBTB22O15209 634 aa23.88■■□□□ 1.41
MRPS35-204ENST00000542199 FOXD4L1Q9NU39 408 aa23.6■■□□□ 1.37
MRPS35-204ENST00000542199 SLC4A2P04920 1241 aa23.51■■□□□ 1.35
MRPS35-204ENST00000542199 DCAF8L1A6NGE4 600 aa23.46■■□□□ 1.35
MRPS35-204ENST00000542199 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.04■■□□□ 1.28
MRPS35-204ENST00000542199 MYCNP04198 464 aaPredicted RBP23.01■■□□□ 1.27
MRPS35-204ENST00000542199 POTEDQ86YR6 584 aa22.84■■□□□ 1.25
MRPS35-204ENST00000542199 U3KPZ7 1027 aaPredicted RBP22.79■■□□□ 1.24
MRPS35-204ENST00000542199 ATXN8OSP0DMR3 200 aa22.65■■□□□ 1.22
MRPS35-204ENST00000542199 ATF5Q9Y2D1 282 aaPredicted RBP22.5■■□□□ 1.19
MRPS35-204ENST00000542199 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.48■■□□□ 1.19
MRPS35-204ENST00000542199 HNRNPUL2Q1KMD3 747 aaKnown RBP22.48■■□□□ 1.19
MRPS35-204ENST00000542199 SAMD1Q6SPF0 538 aaPredicted RBP22.48■■□□□ 1.19
MRPS35-204ENST00000542199 RNF39Q9H2S5 420 aa22.29■■□□□ 1.16
MRPS35-204ENST00000542199 APLP2Q06481 763 aa22.11■■□□□ 1.13
MRPS35-204ENST00000542199 SPINK5Q9NQ38 1064 aaPredicted RBP22.04■■□□□ 1.12
MRPS35-204ENST00000542199 ZNF219Q9P2Y4 722 aaPredicted RBP21.99■■□□□ 1.11
MRPS35-204ENST00000542199 C1QBPQ07021 282 aaKnown RBP21.97■■□□□ 1.11
MRPS35-204ENST00000542199 TRHP20396 242 aaPredicted RBP21.9■■□□□ 1.1
MRPS35-204ENST00000542199 CAPN15O75808 1086 aa21.86■■□□□ 1.09
MRPS35-204ENST00000542199 FKBP8Q14318 412 aa21.72■■□□□ 1.07
MRPS35-204ENST00000542199 POLA2Q14181 598 aa21.63■■□□□ 1.05
MRPS35-204ENST00000542199 ABCB7O75027 752 aa21.57■■□□□ 1.04
MRPS35-204ENST00000542199 MKRN4PQ13434 485 aaPredicted RBP21.52■■□□□ 1.04
MRPS35-204ENST00000542199 DSG3P32926 999 aa21.39■■□□□ 1.01
MRPS35-204ENST00000542199 FBLN2P98095 1184 aa21.36■■□□□ 1.01
MRPS35-204ENST00000542199 CACNB1Q02641 598 aaPredicted RBP21.35■■□□□ 1.01
MRPS35-204ENST00000542199 SPDYE4A6NLX3 237 aa21.2■□□□□ 0.98
MRPS35-204ENST00000542199 ZBTB12Q9Y330 459 aaPredicted RBP21.19■□□□□ 0.98
MRPS35-204ENST00000542199 OSCARQ8IYS5 282 aa20.93■□□□□ 0.94
MRPS35-204ENST00000542199 PROM2Q8N271 834 aa20.91■□□□□ 0.94
MRPS35-204ENST00000542199 ZNF692Q9BU19 519 aaPredicted RBP20.74■□□□□ 0.91
MRPS35-204ENST00000542199 SPDYE2BA6NHP3 402 aa20.71■□□□□ 0.91
MRPS35-204ENST00000542199 SPDYE6P0CI01 402 aa20.71■□□□□ 0.91
MRPS35-204ENST00000542199 SPDYE2Q495Y8 402 aa20.71■□□□□ 0.91
MRPS35-204ENST00000542199 FBXO3Q9UK99 471 aa20.67■□□□□ 0.9
MRPS35-204ENST00000542199 SSUH2Q9Y2M2 353 aa20.66■□□□□ 0.9
MRPS35-204ENST00000542199 RTN4Q9NQC3 1192 aaKnown RBP20.64■□□□□ 0.89
MRPS35-204ENST00000542199 AMER1Q5JTC6 1135 aaPredicted RBP20.54■□□□□ 0.88
MRPS35-204ENST00000542199 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.87
MRPS35-204ENST00000542199 VASPP50552 380 aaPredicted RBP20.49■□□□□ 0.87
MRPS35-204ENST00000542199 IFNLR1Q8IU57 520 aaPredicted RBP20.27■□□□□ 0.84
MRPS35-204ENST00000542199 RBM42Q9BTD8 480 aaKnown RBP20.26■□□□□ 0.83
MRPS35-204ENST00000542199 STAG3Q9UJ98 1225 aa20.21■□□□□ 0.83
MRPS35-204ENST00000542199 AKT1S1Q96B36 256 aa20.15■□□□□ 0.82
MRPS35-204ENST00000542199 PLCD3Q8N3E9 789 aa20.05■□□□□ 0.8
MRPS35-204ENST00000542199 REM2Q8IYK8 340 aaPredicted RBP20.02■□□□□ 0.8
MRPS35-204ENST00000542199 MIER1Q8N108 512 aa20.01■□□□□ 0.79
MRPS35-204ENST00000542199 KLHL34Q8N239 644 aa19.99■□□□□ 0.79
MRPS35-204ENST00000542199 SPDYE1Q8NFV5 336 aaPredicted RBP19.99■□□□□ 0.79
MRPS35-204ENST00000542199 CLEC11AQ9Y240 323 aa19.94■□□□□ 0.78
MRPS35-204ENST00000542199 SPOCK2Q92563 424 aa19.89■□□□□ 0.77
MRPS35-204ENST00000542199 PITPNM1O00562 1244 aa19.82■□□□□ 0.76
MRPS35-204ENST00000542199 PKD2Q13563 968 aa19.79■□□□□ 0.76
MRPS35-204ENST00000542199 PLEKHG5O94827 1062 aa19.78■□□□□ 0.76
MRPS35-204ENST00000542199 PRR29P0C7W0 189 aa19.78■□□□□ 0.76
MRPS35-204ENST00000542199 CREBZFQ9NS37 354 aa19.7■□□□□ 0.74
MRPS35-204ENST00000542199 ZBTB47Q9UFB7 747 aaPredicted RBP19.7■□□□□ 0.74
MRPS35-204ENST00000542199 MNX1P50219 401 aaPredicted RBP19.57■□□□□ 0.72
MRPS35-204ENST00000542199 ECM2O94769 699 aaPredicted RBP19.54■□□□□ 0.72
MRPS35-204ENST00000542199 CIZ1Q9ULV3 898 aaPredicted RBP19.53■□□□□ 0.72
MRPS35-204ENST00000542199 DCAF8L2P0C7V8 631 aa19.5■□□□□ 0.71
MRPS35-204ENST00000542199 NUBP1P53384 320 aa19.5■□□□□ 0.71
MRPS35-204ENST00000542199 NISCHQ9Y2I1 1504 aa19.49■□□□□ 0.71
MRPS35-204ENST00000542199 CHADLQ6NUI6 762 aa19.47■□□□□ 0.71
MRPS35-204ENST00000542199 RGL2O15211 777 aa19.4■□□□□ 0.7
MRPS35-204ENST00000542199 SLC24A1O60721 1099 aa19.35■□□□□ 0.69
MRPS35-204ENST00000542199 RASEFQ8IZ41 740 aa19.35■□□□□ 0.69
MRPS35-204ENST00000542199 GSE1Q14687 1217 aa19.32■□□□□ 0.68
MRPS35-204ENST00000542199 DCAF8Q5TAQ9 597 aa19.32■□□□□ 0.68
MRPS35-204ENST00000542199 FXR2P51116 673 aaKnown RBP eCLIP19.31■□□□□ 0.68
MRPS35-204ENST00000542199 CHRDL2Q6WN34 429 aa19.31■□□□□ 0.68
MRPS35-204ENST00000542199 PRKAR2AP13861 404 aaKnown RBP19.29■□□□□ 0.68
MRPS35-204ENST00000542199 FAM212AQ96EL1 285 aa19.28■□□□□ 0.68
MRPS35-204ENST00000542199 NPM1P06748 294 aaKnown RBP eCLIP19.27■□□□□ 0.68
MRPS35-204ENST00000542199 FARP1Q9Y4F1 1045 aaPredicted RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms