RNA–Protein interactions for RNA: ENST00000541687.5

GCFC2-211, Transcript of GC-rich sequence DNA-binding factor 2, humanhuman

TSL 2 BASIC

Gene GCFC2, Length 4,318 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCFC2-211ENST00000541687 NISCHQ9Y2I1 1504 aa26.67■■□□□ 1.86
GCFC2-211ENST00000541687 DCAF8L2P0C7V8 631 aa25.4■■□□□ 1.66
GCFC2-211ENST00000541687 SUPT5HO00267 1087 aaKnown RBP24.93■■□□□ 1.58
GCFC2-211ENST00000541687 SHROOM4Q9ULL8 1493 aa24.91■■□□□ 1.58
GCFC2-211ENST00000541687 EHMT2Q96KQ7 1210 aa23.75■■□□□ 1.39
GCFC2-211ENST00000541687 PCGF6Q9BYE7 350 aa23.48■■□□□ 1.35
GCFC2-211ENST00000541687 FAM9AQ8IZU1 332 aaPredicted RBP23.36■■□□□ 1.33
GCFC2-211ENST00000541687 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
GCFC2-211ENST00000541687 TRIM41Q8WV44 630 aa22.94■■□□□ 1.26
GCFC2-211ENST00000541687 TTBK1Q5TCY1 1321 aaPredicted RBP22.92■■□□□ 1.26
GCFC2-211ENST00000541687 LOC105371045A0A1W2PR82 267 aa22.91■■□□□ 1.26
GCFC2-211ENST00000541687 HRCP23327 699 aa22.7■■□□□ 1.22
GCFC2-211ENST00000541687 PPARGC1BQ86YN6 1023 aaKnown RBP22.68■■□□□ 1.22
GCFC2-211ENST00000541687 RANGAP1P46060 587 aaPredicted RBP22.48■■□□□ 1.19
GCFC2-211ENST00000541687 TRIM26Q12899 539 aaPredicted RBP22.46■■□□□ 1.19
GCFC2-211ENST00000541687 CCER1Q8TC90 406 aaPredicted RBP22.4■■□□□ 1.18
GCFC2-211ENST00000541687 APLP2Q06481 763 aa22.34■■□□□ 1.17
GCFC2-211ENST00000541687 CCDC180Q9P1Z9 1646 aa22.34■■□□□ 1.17
GCFC2-211ENST00000541687 ZEB1P37275 1124 aaPredicted RBP22.33■■□□□ 1.16
GCFC2-211ENST00000541687 UBTFP17480 764 aaKnown RBP22.3■■□□□ 1.16
GCFC2-211ENST00000541687 ZCCHC6Q5VYS8 1495 aaKnown RBP22.28■■□□□ 1.16
GCFC2-211ENST00000541687 ABCC9O60706 1549 aa22.11■■□□□ 1.13
GCFC2-211ENST00000541687 MYO15BQ96JP2 1530 aa22.01■■□□□ 1.11
GCFC2-211ENST00000541687 PELP1Q8IZL8 1130 aaKnown RBP22■■□□□ 1.11
GCFC2-211ENST00000541687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.97■■□□□ 1.11
GCFC2-211ENST00000541687 YTHDC1Q96MU7 727 aaKnown RBP21.9■■□□□ 1.1
GCFC2-211ENST00000541687 CENPBP07199 599 aaPredicted RBP21.87■■□□□ 1.09
GCFC2-211ENST00000541687 PABPN1Q86U42 306 aaKnown RBP eCLIP21.83■■□□□ 1.08
GCFC2-211ENST00000541687 ATP1B4Q9UN42 357 aaPredicted RBP21.8■■□□□ 1.08
GCFC2-211ENST00000541687 HNRNPUL2Q1KMD3 747 aaKnown RBP21.79■■□□□ 1.08
GCFC2-211ENST00000541687 SCRIBQ14160 1630 aa21.74■■□□□ 1.07
GCFC2-211ENST00000541687 ITGAEP38570 1179 aa21.62■■□□□ 1.05
GCFC2-211ENST00000541687 DCAF1Q9Y4B6 1507 aa21.57■■□□□ 1.04
GCFC2-211ENST00000541687 DIEXFQ68CQ4 756 aaKnown RBP21.52■■□□□ 1.04
GCFC2-211ENST00000541687 RSF1Q96T23 1441 aaPredicted RBP21.45■■□□□ 1.02
GCFC2-211ENST00000541687 CSRNP3Q8WYN3 585 aa21.36■■□□□ 1.01
GCFC2-211ENST00000541687 ERICH6Q7L0X2 663 aa21.3■■□□□ 1
GCFC2-211ENST00000541687 GTF3C3Q9Y5Q9 886 aa21.2■□□□□ 0.98
GCFC2-211ENST00000541687 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.97
GCFC2-211ENST00000541687 ZNF316A6NFI3 1004 aaPredicted RBP21.1■□□□□ 0.97
GCFC2-211ENST00000541687 ACIN1Q9UKV3 1341 aaKnown RBP21.05■□□□□ 0.96
GCFC2-211ENST00000541687 FAM50AQ14320 339 aaKnown RBP21.05■□□□□ 0.96
GCFC2-211ENST00000541687 RB1CC1Q8TDY2 1594 aa20.99■□□□□ 0.95
GCFC2-211ENST00000541687 NEUROD1Q13562 356 aa20.98■□□□□ 0.95
GCFC2-211ENST00000541687 NEFLP07196 543 aa20.97■□□□□ 0.95
GCFC2-211ENST00000541687 P3H3Q8IVL6 736 aa20.96■□□□□ 0.95
GCFC2-211ENST00000541687 SCAF1Q9H7N4 1312 aaKnown RBP20.95■□□□□ 0.94
GCFC2-211ENST00000541687 CNGB1Q14028 1251 aaPredicted RBP20.91■□□□□ 0.94
GCFC2-211ENST00000541687 MYT1Q01538 1121 aa20.89■□□□□ 0.93
GCFC2-211ENST00000541687 MROH2BQ7Z745 1585 aa20.86■□□□□ 0.93
GCFC2-211ENST00000541687 CEP162Q5TB80 1403 aa20.86■□□□□ 0.93
GCFC2-211ENST00000541687 NACADO15069 1562 aa20.83■□□□□ 0.92
GCFC2-211ENST00000541687 POLR3GLQ9BT43 218 aa20.82■□□□□ 0.92
GCFC2-211ENST00000541687 BCANQ96GW7 911 aa20.76■□□□□ 0.91
GCFC2-211ENST00000541687 SOGA1O94964 1423 aa20.75■□□□□ 0.91
GCFC2-211ENST00000541687 CLIP1P30622 1438 aa20.73■□□□□ 0.91
GCFC2-211ENST00000541687 MIER1Q8N108 512 aa20.71■□□□□ 0.91
GCFC2-211ENST00000541687 ARID3CA6NKF2 412 aa20.68■□□□□ 0.9
GCFC2-211ENST00000541687 WRNQ14191 1432 aaPredicted RBP eCLIP20.68■□□□□ 0.9
GCFC2-211ENST00000541687 ABCC8Q09428 1581 aa20.66■□□□□ 0.9
GCFC2-211ENST00000541687 TRIM52Q96A61 297 aa20.66■□□□□ 0.9
GCFC2-211ENST00000541687 BAZ1AQ9NRL2 1556 aaPredicted RBP20.65■□□□□ 0.9
GCFC2-211ENST00000541687 TNIKQ9UKE5 1360 aa20.65■□□□□ 0.9
GCFC2-211ENST00000541687 CCDC88BA6NC98 1476 aa20.63■□□□□ 0.89
GCFC2-211ENST00000541687 GOLGA3Q08378 1498 aa20.62■□□□□ 0.89
GCFC2-211ENST00000541687 WIZO95785 1651 aa20.61■□□□□ 0.89
GCFC2-211ENST00000541687 EEA1Q15075 1411 aa20.56■□□□□ 0.88
GCFC2-211ENST00000541687 DDX10Q13206 875 aaKnown RBP20.5■□□□□ 0.87
GCFC2-211ENST00000541687 HIRIP3Q9BW71 556 aaPredicted RBP20.5■□□□□ 0.87
GCFC2-211ENST00000541687 ANP32CO43423 234 aa20.49■□□□□ 0.87
GCFC2-211ENST00000541687 BAZ1BQ9UIG0 1483 aaKnown RBP20.46■□□□□ 0.87
GCFC2-211ENST00000541687 ZNF326Q5BKZ1 582 aaKnown RBP20.44■□□□□ 0.86
GCFC2-211ENST00000541687 CEP164Q9UPV0 1460 aa20.43■□□□□ 0.86
GCFC2-211ENST00000541687 FBLN2P98095 1184 aa20.39■□□□□ 0.85
GCFC2-211ENST00000541687 RUSC2Q8N2Y8 1516 aa20.37■□□□□ 0.85
GCFC2-211ENST00000541687 CHIC2Q9UKJ5 165 aa20.34■□□□□ 0.85
GCFC2-211ENST00000541687 FKBP8Q14318 412 aa20.3■□□□□ 0.84
GCFC2-211ENST00000541687 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
GCFC2-211ENST00000541687 KANK4Q5T7N3 995 aaPredicted RBP20.3■□□□□ 0.84
GCFC2-211ENST00000541687 TONSLQ96HA7 1378 aa20.28■□□□□ 0.84
GCFC2-211ENST00000541687 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
GCFC2-211ENST00000541687 DAXXQ9UER7 740 aaPredicted RBP20.26■□□□□ 0.83
GCFC2-211ENST00000541687 ZNF777Q9ULD5 760 aaPredicted RBP20.25■□□□□ 0.83
GCFC2-211ENST00000541687 KIF27Q86VH2 1401 aa20.24■□□□□ 0.83
GCFC2-211ENST00000541687 SIN3AQ96ST3 1273 aa20.23■□□□□ 0.83
GCFC2-211ENST00000541687 VPS8Q8N3P4 1428 aa20.21■□□□□ 0.83
GCFC2-211ENST00000541687 UNC13AQ9UPW8 1703 aa20.17■□□□□ 0.82
GCFC2-211ENST00000541687 MTUS2Q5JR59 1369 aa20.17■□□□□ 0.82
GCFC2-211ENST00000541687 HNRNPUQ00839 825 aaKnown RBP eCLIP20.16■□□□□ 0.82
GCFC2-211ENST00000541687 RRP7BPQ9NSQ0 103 aa20.15■□□□□ 0.82
GCFC2-211ENST00000541687 RAPGEF2Q9Y4G8 1499 aa20.12■□□□□ 0.81
GCFC2-211ENST00000541687 SMARCA4P51532 1647 aa20.11■□□□□ 0.81
GCFC2-211ENST00000541687 CCNB3Q8WWL7 1395 aa20.09■□□□□ 0.81
GCFC2-211ENST00000541687 FAM9BQ8IZU0 186 aa20.09■□□□□ 0.81
GCFC2-211ENST00000541687 IRX6P78412 446 aaPredicted RBP20.07■□□□□ 0.8
GCFC2-211ENST00000541687 CDK11AQ9UQ88 783 aaPredicted RBP20.06■□□□□ 0.8
GCFC2-211ENST00000541687 CUX2O14529 1486 aa20.05■□□□□ 0.8
GCFC2-211ENST00000541687 SMARCA2P51531 1590 aa20.02■□□□□ 0.79
GCFC2-211ENST00000541687 RTL5Q5HYW3 569 aaPredicted RBP20.01■□□□□ 0.79
GCFC2-211ENST00000541687 CARMIL1Q5VZK9 1371 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms