RNA–Protein interactions for RNA: ENST00000541304.5

CDKN3-206, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 2 BASIC

Gene CDKN3, Length 1,070 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-206ENST00000541304 AEBP2Q6ZN18 517 aaPredicted RBP21.1■□□□□ 0.97
CDKN3-206ENST00000541304 CHIC1Q5VXU3 224 aa20.24■□□□□ 0.83
CDKN3-206ENST00000541304 SENP3Q9H4L4 574 aaPredicted RBP18.05■□□□□ 0.48
CDKN3-206ENST00000541304 PHF23Q9BUL5 403 aaPredicted RBP17.78■□□□□ 0.44
CDKN3-206ENST00000541304 POTEDQ86YR6 584 aa17.34■□□□□ 0.37
CDKN3-206ENST00000541304 FOXD1Q16676 465 aa16.75■□□□□ 0.27
CDKN3-206ENST00000541304 PLPPR3Q6T4P5 718 aa16.27■□□□□ 0.2
CDKN3-206ENST00000541304 PIAS4Q8N2W9 510 aaPredicted RBP15.74■□□□□ 0.11
CDKN3-206ENST00000541304 MSH5O43196 834 aa15.73■□□□□ 0.11
CDKN3-206ENST00000541304 PPP6R1Q9UPN7 881 aa15.73■□□□□ 0.11
CDKN3-206ENST00000541304 ADRA2BP18089 450 aa15.71■□□□□ 0.11
CDKN3-206ENST00000541304 SCAF1Q9H7N4 1312 aaKnown RBP14.45□□□□□ -0.1
CDKN3-206ENST00000541304 MAPK8IP2Q13387 824 aaPredicted RBP14.36□□□□□ -0.11
CDKN3-206ENST00000541304 DMRT2Q9Y5R5 561 aa14.32□□□□□ -0.12
CDKN3-206ENST00000541304 PPP4R3CPQ6ZMV5 832 aa14.25□□□□□ -0.13
CDKN3-206ENST00000541304 CACNB1Q02641 598 aaPredicted RBP14.23□□□□□ -0.13
CDKN3-206ENST00000541304 CNKSR2Q8WXI2 1034 aa13.97□□□□□ -0.17
CDKN3-206ENST00000541304 HOXD11P31277 338 aaPredicted RBP13.85□□□□□ -0.19
CDKN3-206ENST00000541304 RNF216Q9NWF9 866 aaPredicted RBP13.8□□□□□ -0.2
CDKN3-206ENST00000541304 NCBP3Q53F19 620 aaKnown RBP13.79□□□□□ -0.2
CDKN3-206ENST00000541304 DCAF8L1A6NGE4 600 aa13.72□□□□□ -0.21
CDKN3-206ENST00000541304 NPM3O75607 178 aaKnown RBP13.55□□□□□ -0.24
CDKN3-206ENST00000541304 KCNA4P22459 653 aa13.42□□□□□ -0.26
CDKN3-206ENST00000541304 NISCHQ9Y2I1 1504 aa13.39□□□□□ -0.27
CDKN3-206ENST00000541304 DNAJC5BQ9UF47 199 aa13.37□□□□□ -0.27
CDKN3-206ENST00000541304 POTEHQ6S545 545 aa13.36□□□□□ -0.27
CDKN3-206ENST00000541304 RNF39Q9H2S5 420 aa13.36□□□□□ -0.27
CDKN3-206ENST00000541304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.2□□□□□ -0.3
CDKN3-206ENST00000541304 C1QBPQ07021 282 aaKnown RBP13.18□□□□□ -0.3
CDKN3-206ENST00000541304 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
CDKN3-206ENST00000541304 SLC4A2P04920 1241 aa12.88□□□□□ -0.35
CDKN3-206ENST00000541304 SLC4A1APQ9BWU0 796 aaKnown RBP12.73□□□□□ -0.37
CDKN3-206ENST00000541304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.68□□□□□ -0.38
CDKN3-206ENST00000541304 CAPN15O75808 1086 aa12.68□□□□□ -0.38
CDKN3-206ENST00000541304 HNRNPUL2Q1KMD3 747 aaKnown RBP12.68□□□□□ -0.38
CDKN3-206ENST00000541304 SPINK5Q9NQ38 1064 aaPredicted RBP12.68□□□□□ -0.38
CDKN3-206ENST00000541304 APLP2Q06481 763 aa12.67□□□□□ -0.38
CDKN3-206ENST00000541304 SAMD1Q6SPF0 538 aaPredicted RBP12.6□□□□□ -0.39
CDKN3-206ENST00000541304 MYCNP04198 464 aaPredicted RBP12.58□□□□□ -0.4
CDKN3-206ENST00000541304 DSG3P32926 999 aa12.55□□□□□ -0.4
CDKN3-206ENST00000541304 ZNF219Q9P2Y4 722 aaPredicted RBP12.54□□□□□ -0.4
CDKN3-206ENST00000541304 FOXD4L1Q9NU39 408 aa12.52□□□□□ -0.41
CDKN3-206ENST00000541304 TRHP20396 242 aaPredicted RBP12.5□□□□□ -0.41
CDKN3-206ENST00000541304 ABCB7O75027 752 aa12.39□□□□□ -0.43
CDKN3-206ENST00000541304 ZBTB22O15209 634 aa12.33□□□□□ -0.44
CDKN3-206ENST00000541304 POLA2Q14181 598 aa12.19□□□□□ -0.46
CDKN3-206ENST00000541304 ATF5Q9Y2D1 282 aaPredicted RBP12.19□□□□□ -0.46
CDKN3-206ENST00000541304 ATXN8OSP0DMR3 200 aa12.12□□□□□ -0.47
CDKN3-206ENST00000541304 RBM42Q9BTD8 480 aaKnown RBP12.04□□□□□ -0.48
CDKN3-206ENST00000541304 ZBTB12Q9Y330 459 aaPredicted RBP12.04□□□□□ -0.48
CDKN3-206ENST00000541304 SP7Q8TDD2 431 aaPredicted RBP11.98□□□□□ -0.49
CDKN3-206ENST00000541304 CSRNP3Q8WYN3 585 aa11.89□□□□□ -0.51
CDKN3-206ENST00000541304 CCDC180Q9P1Z9 1646 aa11.87□□□□□ -0.51
CDKN3-206ENST00000541304 EHMT2Q96KQ7 1210 aa11.87□□□□□ -0.51
CDKN3-206ENST00000541304 OSCARQ8IYS5 282 aa11.84□□□□□ -0.51
CDKN3-206ENST00000541304 FBLN2P98095 1184 aa11.79□□□□□ -0.52
CDKN3-206ENST00000541304 CHRDL2Q6WN34 429 aa11.77□□□□□ -0.53
CDKN3-206ENST00000541304 AKT1S1Q96B36 256 aa11.76□□□□□ -0.53
CDKN3-206ENST00000541304 MKRN4PQ13434 485 aaPredicted RBP11.66□□□□□ -0.54
CDKN3-206ENST00000541304 SPDYE2BA6NHP3 402 aa11.65□□□□□ -0.54
CDKN3-206ENST00000541304 SPDYE6P0CI01 402 aa11.65□□□□□ -0.54
CDKN3-206ENST00000541304 SPDYE2Q495Y8 402 aa11.65□□□□□ -0.54
CDKN3-206ENST00000541304 REM2Q8IYK8 340 aaPredicted RBP11.62□□□□□ -0.55
CDKN3-206ENST00000541304 PLSCR2Q9NRY7 297 aa11.53□□□□□ -0.56
CDKN3-206ENST00000541304 PITPNM1O00562 1244 aa11.52□□□□□ -0.57
CDKN3-206ENST00000541304 ZNF692Q9BU19 519 aaPredicted RBP11.5□□□□□ -0.57
CDKN3-206ENST00000541304 SSUH2Q9Y2M2 353 aa11.5□□□□□ -0.57
CDKN3-206ENST00000541304 PIP4P2Q8N4L2 257 aa11.41□□□□□ -0.58
CDKN3-206ENST00000541304 SPDYE1Q8NFV5 336 aaPredicted RBP11.41□□□□□ -0.58
CDKN3-206ENST00000541304 HAX1O00165 279 aa11.38□□□□□ -0.59
CDKN3-206ENST00000541304 FXR2P51116 673 aaKnown RBP eCLIP11.37□□□□□ -0.59
CDKN3-206ENST00000541304 CLEC11AQ9Y240 323 aa11.35□□□□□ -0.59
CDKN3-206ENST00000541304 PABPN1Q86U42 306 aaKnown RBP eCLIP11.34□□□□□ -0.59
CDKN3-206ENST00000541304 ZCCHC6Q5VYS8 1495 aaKnown RBP11.23□□□□□ -0.61
CDKN3-206ENST00000541304 SPDYE4A6NLX3 237 aa11.22□□□□□ -0.61
CDKN3-206ENST00000541304 LHX8Q68G74 356 aa11.22□□□□□ -0.61
CDKN3-206ENST00000541304 PRKAR2AP13861 404 aaKnown RBP11.21□□□□□ -0.61
CDKN3-206ENST00000541304 ABCC9O60706 1549 aa11.2□□□□□ -0.62
CDKN3-206ENST00000541304 DCAF1Q9Y4B6 1507 aa11.19□□□□□ -0.62
CDKN3-206ENST00000541304 PRR29P0C7W0 189 aa11.19□□□□□ -0.62
CDKN3-206ENST00000541304 MYO15BQ96JP2 1530 aa11.18□□□□□ -0.62
CDKN3-206ENST00000541304 EVX2Q03828 476 aa11.15□□□□□ -0.62
CDKN3-206ENST00000541304 CHADLQ6NUI6 762 aa11.1□□□□□ -0.63
CDKN3-206ENST00000541304 STAG3Q9UJ98 1225 aa11.1□□□□□ -0.63
CDKN3-206ENST00000541304 NACADO15069 1562 aa11.09□□□□□ -0.63
CDKN3-206ENST00000541304 RB1CC1Q8TDY2 1594 aa11.03□□□□□ -0.64
CDKN3-206ENST00000541304 C19orf67A6NJJ6 358 aa11□□□□□ -0.65
CDKN3-206ENST00000541304 PROM2Q8N271 834 aa10.98□□□□□ -0.65
CDKN3-206ENST00000541304 FARP1Q9Y4F1 1045 aaPredicted RBP10.97□□□□□ -0.65
CDKN3-206ENST00000541304 CREBZFQ9NS37 354 aa10.94□□□□□ -0.66
CDKN3-206ENST00000541304 DCAF8L2P0C7V8 631 aa10.92□□□□□ -0.66
CDKN3-206ENST00000541304 CD44P16070 742 aaKnown RBP10.88□□□□□ -0.67
CDKN3-206ENST00000541304 GABBR2O75899 941 aa10.82□□□□□ -0.68
CDKN3-206ENST00000541304 FKBP8Q14318 412 aa10.82□□□□□ -0.68
CDKN3-206ENST00000541304 NPM1P06748 294 aaKnown RBP eCLIP10.78□□□□□ -0.68
CDKN3-206ENST00000541304 MNX1P50219 401 aaPredicted RBP10.76□□□□□ -0.69
CDKN3-206ENST00000541304 PAK3O75914 559 aaPredicted RBP10.74□□□□□ -0.69
CDKN3-206ENST00000541304 ZNF579Q8NAF0 562 aaKnown RBP10.74□□□□□ -0.69
CDKN3-206ENST00000541304 ZRANB1Q9UGI0 708 aa10.74□□□□□ -0.69
CDKN3-206ENST00000541304 SHROOM4Q9ULL8 1493 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 991.1 ms