RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 AEBP2Q6ZN18 517 aaPredicted RBP34.48■■■■□ 3.11
YBX3-210ENST00000540975 CHIC1Q5VXU3 224 aa33.6■■■□□ 2.97
YBX3-210ENST00000540975 PHF23Q9BUL5 403 aaPredicted RBP29.57■■■□□ 2.32
YBX3-210ENST00000540975 SENP3Q9H4L4 574 aaPredicted RBP29.23■■■□□ 2.27
YBX3-210ENST00000540975 PLPPR3Q6T4P5 718 aa27.24■■□□□ 1.95
YBX3-210ENST00000540975 FOXD1Q16676 465 aa27.18■■□□□ 1.94
YBX3-210ENST00000540975 PPP6R1Q9UPN7 881 aa26.13■■□□□ 1.77
YBX3-210ENST00000540975 ADRA2BP18089 450 aa26.08■■□□□ 1.77
YBX3-210ENST00000540975 PIAS4Q8N2W9 510 aaPredicted RBP25.57■■□□□ 1.68
YBX3-210ENST00000540975 MSH5O43196 834 aa25.04■■□□□ 1.6
YBX3-210ENST00000540975 PPP4R3CPQ6ZMV5 832 aa24.02■■□□□ 1.44
YBX3-210ENST00000540975 SCAF1Q9H7N4 1312 aaKnown RBP23.85■■□□□ 1.41
YBX3-210ENST00000540975 MAPK8IP2Q13387 824 aaPredicted RBP23.71■■□□□ 1.39
YBX3-210ENST00000540975 KCNA4P22459 653 aa23.38■■□□□ 1.33
YBX3-210ENST00000540975 NCBP3Q53F19 620 aaKnown RBP23.35■■□□□ 1.33
YBX3-210ENST00000540975 CNKSR2Q8WXI2 1034 aa23.35■■□□□ 1.33
YBX3-210ENST00000540975 DMRT2Q9Y5R5 561 aa23.34■■□□□ 1.33
YBX3-210ENST00000540975 NPM3O75607 178 aaKnown RBP23.02■■□□□ 1.28
YBX3-210ENST00000540975 POTEDQ86YR6 584 aa22.95■■□□□ 1.26
YBX3-210ENST00000540975 RNF216Q9NWF9 866 aaPredicted RBP22.91■■□□□ 1.26
YBX3-210ENST00000540975 HOXD11P31277 338 aaPredicted RBP22.84■■□□□ 1.25
YBX3-210ENST00000540975 DNAJC5BQ9UF47 199 aa22.36■■□□□ 1.17
YBX3-210ENST00000540975 DCAF8L1A6NGE4 600 aa22.32■■□□□ 1.16
YBX3-210ENST00000540975 SLC4A1APQ9BWU0 796 aaKnown RBP22.23■■□□□ 1.15
YBX3-210ENST00000540975 SLC4A2P04920 1241 aa21.77■■□□□ 1.08
YBX3-210ENST00000540975 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.75■■□□□ 1.071e-8■□□□□ 9.1
YBX3-210ENST00000540975 ZBTB22O15209 634 aa21.51■■□□□ 1.03
YBX3-210ENST00000540975 EHMT2Q96KQ7 1210 aa21.51■■□□□ 1.03
YBX3-210ENST00000540975 FOXD4L1Q9NU39 408 aa21.51■■□□□ 1.03
YBX3-210ENST00000540975 RNF39Q9H2S5 420 aa21.48■■□□□ 1.03
YBX3-210ENST00000540975 U3KPZ7 1027 aaPredicted RBP21.39■■□□□ 1.01
YBX3-210ENST00000540975 CSRNP3Q8WYN3 585 aa21.36■■□□□ 1.01
YBX3-210ENST00000540975 MYCNP04198 464 aaPredicted RBP21.25■□□□□ 0.99
YBX3-210ENST00000540975 C1QBPQ07021 282 aaKnown RBP21.22■□□□□ 0.99
YBX3-210ENST00000540975 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.09■□□□□ 0.97
YBX3-210ENST00000540975 HNRNPUL2Q1KMD3 747 aaKnown RBP21.09■□□□□ 0.97
YBX3-210ENST00000540975 SAMD1Q6SPF0 538 aaPredicted RBP21.01■□□□□ 0.95
YBX3-210ENST00000540975 CACNB1Q02641 598 aaPredicted RBP20.97■□□□□ 0.95
YBX3-210ENST00000540975 APLP2Q06481 763 aa20.86■□□□□ 0.93
YBX3-210ENST00000540975 SPINK5Q9NQ38 1064 aaPredicted RBP20.83■□□□□ 0.93
YBX3-210ENST00000540975 ATXN8OSP0DMR3 200 aa20.78■□□□□ 0.92
YBX3-210ENST00000540975 CAPN15O75808 1086 aa20.73■□□□□ 0.91
YBX3-210ENST00000540975 ATF5Q9Y2D1 282 aaPredicted RBP20.73■□□□□ 0.91
YBX3-210ENST00000540975 TRHP20396 242 aaPredicted RBP20.63■□□□□ 0.89
YBX3-210ENST00000540975 ZNF219Q9P2Y4 722 aaPredicted RBP20.59■□□□□ 0.89
YBX3-210ENST00000540975 DSG3P32926 999 aa20.43■□□□□ 0.86
YBX3-210ENST00000540975 ABCB7O75027 752 aa20.32■□□□□ 0.84
YBX3-210ENST00000540975 POLA2Q14181 598 aa20.31■□□□□ 0.84
YBX3-210ENST00000540975 ZBTB12Q9Y330 459 aaPredicted RBP19.9■□□□□ 0.78
YBX3-210ENST00000540975 FBLN2P98095 1184 aa19.81■□□□□ 0.76
YBX3-210ENST00000540975 MKRN4PQ13434 485 aaPredicted RBP19.81■□□□□ 0.76
YBX3-210ENST00000540975 OSCARQ8IYS5 282 aa19.56■□□□□ 0.72
YBX3-210ENST00000540975 RBM42Q9BTD8 480 aaKnown RBP19.43■□□□□ 0.7
YBX3-210ENST00000540975 SPDYE2BA6NHP3 402 aa19.38■□□□□ 0.69
YBX3-210ENST00000540975 SPDYE6P0CI01 402 aa19.38■□□□□ 0.69
YBX3-210ENST00000540975 SPDYE2Q495Y8 402 aa19.38■□□□□ 0.69
YBX3-210ENST00000540975 ZNF692Q9BU19 519 aaPredicted RBP19.33■□□□□ 0.68
YBX3-210ENST00000540975 SPDYE4A6NLX3 237 aa19.32■□□□□ 0.68
YBX3-210ENST00000540975 FKBP8Q14318 412 aa19.27■□□□□ 0.68
YBX3-210ENST00000540975 SSUH2Q9Y2M2 353 aa19.23■□□□□ 0.67
YBX3-210ENST00000540975 AKT1S1Q96B36 256 aa19.19■□□□□ 0.66
YBX3-210ENST00000540975 PABPN1Q86U42 306 aaKnown RBP eCLIP19.06■□□□□ 0.643e-28■■■□□ 15
YBX3-210ENST00000540975 REM2Q8IYK8 340 aaPredicted RBP19.03■□□□□ 0.64
YBX3-210ENST00000540975 PROM2Q8N271 834 aa18.99■□□□□ 0.63
YBX3-210ENST00000540975 SPDYE1Q8NFV5 336 aaPredicted RBP18.83■□□□□ 0.6
YBX3-210ENST00000540975 PITPNM1O00562 1244 aa18.78■□□□□ 0.6
YBX3-210ENST00000540975 CLEC11AQ9Y240 323 aa18.76■□□□□ 0.59
YBX3-210ENST00000540975 STAG3Q9UJ98 1225 aa18.72■□□□□ 0.59
YBX3-210ENST00000540975 CHRDL2Q6WN34 429 aa18.66■□□□□ 0.58
YBX3-210ENST00000540975 FBXO3Q9UK99 471 aa18.61■□□□□ 0.57
YBX3-210ENST00000540975 PRR29P0C7W0 189 aa18.6■□□□□ 0.57
YBX3-210ENST00000540975 FXR2P51116 673 aaKnown RBP eCLIP18.47■□□□□ 0.55
YBX3-210ENST00000540975 PIP4P2Q8N4L2 257 aa18.42■□□□□ 0.54
YBX3-210ENST00000540975 MIER1Q8N108 512 aa18.36■□□□□ 0.53
YBX3-210ENST00000540975 VASPP50552 380 aaPredicted RBP18.34■□□□□ 0.53
YBX3-210ENST00000540975 CREBZFQ9NS37 354 aa18.34■□□□□ 0.53
YBX3-210ENST00000540975 PRKAR2AP13861 404 aaKnown RBP18.33■□□□□ 0.52
YBX3-210ENST00000540975 CHADLQ6NUI6 762 aa18.31■□□□□ 0.52
YBX3-210ENST00000540975 PLCD3Q8N3E9 789 aa18.29■□□□□ 0.52
YBX3-210ENST00000540975 PLEKHG5O94827 1062 aa18.22■□□□□ 0.51
YBX3-210ENST00000540975 MNX1P50219 401 aaPredicted RBP18.16■□□□□ 0.5
YBX3-210ENST00000540975 POTEHQ6S545 545 aa18.16■□□□□ 0.5
YBX3-210ENST00000540975 FARP1Q9Y4F1 1045 aaPredicted RBP18.14■□□□□ 0.49
YBX3-210ENST00000540975 IFNLR1Q8IU57 520 aaPredicted RBP18.13■□□□□ 0.49
YBX3-210ENST00000540975 KLHL34Q8N239 644 aa18.07■□□□□ 0.48
YBX3-210ENST00000540975 ZBTB47Q9UFB7 747 aaPredicted RBP18.07■□□□□ 0.48
YBX3-210ENST00000540975 NPM1P06748 294 aaKnown RBP eCLIP18.02■□□□□ 0.48
YBX3-210ENST00000540975 SPOCK2Q92563 424 aa17.91■□□□□ 0.46
YBX3-210ENST00000540975 NUBP1P53384 320 aa17.89■□□□□ 0.45
YBX3-210ENST00000540975 HAX1O00165 279 aa17.86■□□□□ 0.45
YBX3-210ENST00000540975 C19orf67A6NJJ6 358 aa17.84■□□□□ 0.45
YBX3-210ENST00000540975 RASEFQ8IZ41 740 aa17.81■□□□□ 0.44
YBX3-210ENST00000540975 CD44P16070 742 aaKnown RBP17.78■□□□□ 0.44
YBX3-210ENST00000540975 EVX2Q03828 476 aa17.74■□□□□ 0.43
YBX3-210ENST00000540975 TSPYL2Q9H2G4 693 aaPredicted RBP17.73■□□□□ 0.43
YBX3-210ENST00000540975 DCAF8Q5TAQ9 597 aa17.72■□□□□ 0.43
YBX3-210ENST00000540975 PAK3O75914 559 aaPredicted RBP17.71■□□□□ 0.43
YBX3-210ENST00000540975 FAM212AQ96EL1 285 aa17.7■□□□□ 0.42
YBX3-210ENST00000540975 ZRANB1Q9UGI0 708 aa17.69■□□□□ 0.42
YBX3-210ENST00000540975 GSE1Q14687 1217 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms