RNA–Protein interactions for RNA: ENST00000540709.1

MDM2-227, Transcript of MDM2 proto-oncogene, humanhuman

TSL 3

Gene MDM2, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDM2-227ENST00000540709 AEBP2Q6ZN18 517 aaPredicted RBP22.63■■□□□ 1.21
MDM2-227ENST00000540709 CHIC1Q5VXU3 224 aa21.86■■□□□ 1.09
MDM2-227ENST00000540709 SENP3Q9H4L4 574 aaPredicted RBP19.24■□□□□ 0.67
MDM2-227ENST00000540709 PHF23Q9BUL5 403 aaPredicted RBP19.2■□□□□ 0.66
MDM2-227ENST00000540709 FOXD1Q16676 465 aa17.91■□□□□ 0.46
MDM2-227ENST00000540709 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
MDM2-227ENST00000540709 ADRA2BP18089 450 aa17.08■□□□□ 0.32
MDM2-227ENST00000540709 PPP6R1Q9UPN7 881 aa17.06■□□□□ 0.32
MDM2-227ENST00000540709 PIAS4Q8N2W9 510 aaPredicted RBP16.88■□□□□ 0.29
MDM2-227ENST00000540709 POTEDQ86YR6 584 aa16.74■□□□□ 0.27
MDM2-227ENST00000540709 MSH5O43196 834 aa16.59■□□□□ 0.25
MDM2-227ENST00000540709 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
MDM2-227ENST00000540709 MAPK8IP2Q13387 824 aaPredicted RBP15.58■□□□□ 0.08
MDM2-227ENST00000540709 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
MDM2-227ENST00000540709 DMRT2Q9Y5R5 561 aa15.3■□□□□ 0.04
MDM2-227ENST00000540709 CNKSR2Q8WXI2 1034 aa15.15■□□□□ 0.02
MDM2-227ENST00000540709 NCBP3Q53F19 620 aaKnown RBP15.09■□□□□ 0.01
MDM2-227ENST00000540709 KCNA4P22459 653 aa14.95□□□□□ -0.02
MDM2-227ENST00000540709 RNF216Q9NWF9 866 aaPredicted RBP14.88□□□□□ -0.03
MDM2-227ENST00000540709 DCAF8L1A6NGE4 600 aa14.86□□□□□ -0.03
MDM2-227ENST00000540709 HOXD11P31277 338 aaPredicted RBP14.86□□□□□ -0.03
MDM2-227ENST00000540709 NPM3O75607 178 aaKnown RBP14.85□□□□□ -0.03
MDM2-227ENST00000540709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.31□□□□□ -0.12
MDM2-227ENST00000540709 CACNB1Q02641 598 aaPredicted RBP14.26□□□□□ -0.13
MDM2-227ENST00000540709 DNAJC5BQ9UF47 199 aa14.25□□□□□ -0.13
MDM2-227ENST00000540709 SLC4A1APQ9BWU0 796 aaKnown RBP14.21□□□□□ -0.13
MDM2-227ENST00000540709 RNF39Q9H2S5 420 aa14.17□□□□□ -0.14
MDM2-227ENST00000540709 SLC4A2P04920 1241 aa14.06□□□□□ -0.16
MDM2-227ENST00000540709 C1QBPQ07021 282 aaKnown RBP14□□□□□ -0.17
MDM2-227ENST00000540709 U3KPZ7 1027 aaPredicted RBP13.96□□□□□ -0.17
MDM2-227ENST00000540709 FOXD4L1Q9NU39 408 aa13.79□□□□□ -0.2
MDM2-227ENST00000540709 MYCNP04198 464 aaPredicted RBP13.72□□□□□ -0.21
MDM2-227ENST00000540709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.71□□□□□ -0.21
MDM2-227ENST00000540709 ZBTB22O15209 634 aa13.71□□□□□ -0.21
MDM2-227ENST00000540709 CAPN15O75808 1086 aa13.71□□□□□ -0.21
MDM2-227ENST00000540709 HNRNPUL2Q1KMD3 747 aaKnown RBP13.71□□□□□ -0.21
MDM2-227ENST00000540709 SPINK5Q9NQ38 1064 aaPredicted RBP13.7□□□□□ -0.22
MDM2-227ENST00000540709 SAMD1Q6SPF0 538 aaPredicted RBP13.66□□□□□ -0.22
MDM2-227ENST00000540709 APLP2Q06481 763 aa13.63□□□□□ -0.23
MDM2-227ENST00000540709 TRHP20396 242 aaPredicted RBP13.61□□□□□ -0.23
MDM2-227ENST00000540709 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
MDM2-227ENST00000540709 ZNF219Q9P2Y4 722 aaPredicted RBP13.49□□□□□ -0.25
MDM2-227ENST00000540709 CSRNP3Q8WYN3 585 aa13.45□□□□□ -0.26
MDM2-227ENST00000540709 ABCB7O75027 752 aa13.44□□□□□ -0.26
MDM2-227ENST00000540709 DSG3P32926 999 aa13.43□□□□□ -0.26
MDM2-227ENST00000540709 ATF5Q9Y2D1 282 aaPredicted RBP13.4□□□□□ -0.26
MDM2-227ENST00000540709 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
MDM2-227ENST00000540709 POLA2Q14181 598 aa13.27□□□□□ -0.29
MDM2-227ENST00000540709 POTEHQ6S545 545 aa13.01□□□□□ -0.33
MDM2-227ENST00000540709 ZBTB12Q9Y330 459 aaPredicted RBP12.97□□□□□ -0.33
MDM2-227ENST00000540709 FBLN2P98095 1184 aa12.88□□□□□ -0.35
MDM2-227ENST00000540709 OSCARQ8IYS5 282 aa12.82□□□□□ -0.36
MDM2-227ENST00000540709 RBM42Q9BTD8 480 aaKnown RBP12.82□□□□□ -0.36
MDM2-227ENST00000540709 MKRN4PQ13434 485 aaPredicted RBP12.77□□□□□ -0.37
MDM2-227ENST00000540709 SPDYE2BA6NHP3 402 aa12.6□□□□□ -0.39
MDM2-227ENST00000540709 SPDYE6P0CI01 402 aa12.6□□□□□ -0.39
MDM2-227ENST00000540709 SPDYE2Q495Y8 402 aa12.6□□□□□ -0.39
MDM2-227ENST00000540709 AKT1S1Q96B36 256 aa12.6□□□□□ -0.39
MDM2-227ENST00000540709 ZNF692Q9BU19 519 aaPredicted RBP12.59□□□□□ -0.39
MDM2-227ENST00000540709 REM2Q8IYK8 340 aaPredicted RBP12.51□□□□□ -0.41
MDM2-227ENST00000540709 SSUH2Q9Y2M2 353 aa12.44□□□□□ -0.42
MDM2-227ENST00000540709 SPDYE4A6NLX3 237 aa12.42□□□□□ -0.42
MDM2-227ENST00000540709 PABPN1Q86U42 306 aaKnown RBP eCLIP12.41□□□□□ -0.42
MDM2-227ENST00000540709 CHRDL2Q6WN34 429 aa12.4□□□□□ -0.42
MDM2-227ENST00000540709 CLEC11AQ9Y240 323 aa12.39□□□□□ -0.43
MDM2-227ENST00000540709 PITPNM1O00562 1244 aa12.36□□□□□ -0.43
MDM2-227ENST00000540709 SPDYE1Q8NFV5 336 aaPredicted RBP12.32□□□□□ -0.44
MDM2-227ENST00000540709 FKBP8Q14318 412 aa12.25□□□□□ -0.45
MDM2-227ENST00000540709 PRR29P0C7W0 189 aa12.18□□□□□ -0.46
MDM2-227ENST00000540709 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
MDM2-227ENST00000540709 FXR2P51116 673 aaKnown RBP eCLIP12.13□□□□□ -0.47
MDM2-227ENST00000540709 STAG3Q9UJ98 1225 aa12.11□□□□□ -0.47
MDM2-227ENST00000540709 PRKAR2AP13861 404 aaKnown RBP12.09□□□□□ -0.47
MDM2-227ENST00000540709 CHADLQ6NUI6 762 aa12.08□□□□□ -0.48
MDM2-227ENST00000540709 PROM2Q8N271 834 aa12.03□□□□□ -0.48
MDM2-227ENST00000540709 SP7Q8TDD2 431 aaPredicted RBP11.99□□□□□ -0.49
MDM2-227ENST00000540709 HAX1O00165 279 aa11.95□□□□□ -0.5
MDM2-227ENST00000540709 CREBZFQ9NS37 354 aa11.9□□□□□ -0.5
MDM2-227ENST00000540709 MIER1Q8N108 512 aa11.87□□□□□ -0.51
MDM2-227ENST00000540709 FARP1Q9Y4F1 1045 aaPredicted RBP11.87□□□□□ -0.51
MDM2-227ENST00000540709 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
MDM2-227ENST00000540709 FBXO3Q9UK99 471 aa11.83□□□□□ -0.52
MDM2-227ENST00000540709 PLEKHG5O94827 1062 aa11.82□□□□□ -0.52
MDM2-227ENST00000540709 EVX2Q03828 476 aa11.76□□□□□ -0.53
MDM2-227ENST00000540709 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
MDM2-227ENST00000540709 C19orf67A6NJJ6 358 aa11.73□□□□□ -0.53
MDM2-227ENST00000540709 CD44P16070 742 aaKnown RBP11.73□□□□□ -0.53
MDM2-227ENST00000540709 MNX1P50219 401 aaPredicted RBP11.7□□□□□ -0.54
MDM2-227ENST00000540709 VASPP50552 380 aaPredicted RBP11.67□□□□□ -0.54
MDM2-227ENST00000540709 KLHL34Q8N239 644 aa11.65□□□□□ -0.54
MDM2-227ENST00000540709 ZRANB1Q9UGI0 708 aa11.65□□□□□ -0.54
MDM2-227ENST00000540709 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
MDM2-227ENST00000540709 ZBTB47Q9UFB7 747 aaPredicted RBP11.62□□□□□ -0.55
MDM2-227ENST00000540709 TSPYL2Q9H2G4 693 aaPredicted RBP11.61□□□□□ -0.55
MDM2-227ENST00000540709 RASEFQ8IZ41 740 aa11.53□□□□□ -0.56
MDM2-227ENST00000540709 GABBR2O75899 941 aa11.52□□□□□ -0.57
MDM2-227ENST00000540709 PHF12Q96QT6 1004 aa11.51□□□□□ -0.57
MDM2-227ENST00000540709 IFNLR1Q8IU57 520 aaPredicted RBP11.49□□□□□ -0.57
MDM2-227ENST00000540709 ZNF579Q8NAF0 562 aaKnown RBP11.49□□□□□ -0.57
MDM2-227ENST00000540709 NUBP1P53384 320 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms