RNA–Protein interactions for RNA: ENST00000540638.6

EPB41L3-204, Transcript of erythrocyte membrane protein band 4.1 like 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene EPB41L3, Length 3,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPB41L3-204ENST00000540638 NISCHQ9Y2I1 1504 aa34.9■■■■□ 3.18
EPB41L3-204ENST00000540638 SHROOM4Q9ULL8 1493 aa30.8■■■□□ 2.52
EPB41L3-204ENST00000540638 DCAF8L2P0C7V8 631 aa30.76■■■□□ 2.52
EPB41L3-204ENST00000540638 SUPT5HO00267 1087 aaKnown RBP30.21■■■□□ 2.43
EPB41L3-204ENST00000540638 ZCCHC6Q5VYS8 1495 aaKnown RBP29.31■■■□□ 2.28
EPB41L3-204ENST00000540638 CCDC180Q9P1Z9 1646 aa29.27■■■□□ 2.28
EPB41L3-204ENST00000540638 CHIC1Q5VXU3 224 aa28.58■■■□□ 2.17
EPB41L3-204ENST00000540638 ABCC9O60706 1549 aa28.57■■■□□ 2.16
EPB41L3-204ENST00000540638 EHMT2Q96KQ7 1210 aa28.31■■■□□ 2.12
EPB41L3-204ENST00000540638 SCRIBQ14160 1630 aa28.23■■■□□ 2.11
EPB41L3-204ENST00000540638 LOC105371045A0A1W2PR82 267 aa28.14■■■□□ 2.1
EPB41L3-204ENST00000540638 FAM9AQ8IZU1 332 aaPredicted RBP28.13■■■□□ 2.09
EPB41L3-204ENST00000540638 DCAF1Q9Y4B6 1507 aa28.11■■■□□ 2.09
EPB41L3-204ENST00000540638 MYO15BQ96JP2 1530 aa28.1■■■□□ 2.09
EPB41L3-204ENST00000540638 PCGF6Q9BYE7 350 aa27.95■■■□□ 2.06
EPB41L3-204ENST00000540638 TRIM41Q8WV44 630 aa27.89■■■□□ 2.05
EPB41L3-204ENST00000540638 RSF1Q96T23 1441 aaPredicted RBP27.72■■■□□ 2.03
EPB41L3-204ENST00000540638 PABPN1Q86U42 306 aaKnown RBP eCLIP27.66■■■□□ 2.02
EPB41L3-204ENST00000540638 CECR2Q9BXF3 1484 aa27.58■■■□□ 2.01
EPB41L3-204ENST00000540638 NACADO15069 1562 aa27.46■■□□□ 1.99
EPB41L3-204ENST00000540638 PPARGC1BQ86YN6 1023 aaKnown RBP27.35■■□□□ 1.97
EPB41L3-204ENST00000540638 RB1CC1Q8TDY2 1594 aa27.34■■□□□ 1.97
EPB41L3-204ENST00000540638 MROH2BQ7Z745 1585 aa27.29■■□□□ 1.96
EPB41L3-204ENST00000540638 TTBK1Q5TCY1 1321 aaPredicted RBP27.24■■□□□ 1.95
EPB41L3-204ENST00000540638 HRCP23327 699 aa27.22■■□□□ 1.95
EPB41L3-204ENST00000540638 WIZO95785 1651 aa27.09■■□□□ 1.93
EPB41L3-204ENST00000540638 TRIM26Q12899 539 aaPredicted RBP27.03■■□□□ 1.92
EPB41L3-204ENST00000540638 RANGAP1P46060 587 aaPredicted RBP26.9■■□□□ 1.9
EPB41L3-204ENST00000540638 UBTFP17480 764 aaKnown RBP26.84■■□□□ 1.89
EPB41L3-204ENST00000540638 BAZ1AQ9NRL2 1556 aaPredicted RBP26.84■■□□□ 1.89
EPB41L3-204ENST00000540638 CCDC88BA6NC98 1476 aa26.64■■□□□ 1.86
EPB41L3-204ENST00000540638 ABCC8Q09428 1581 aa26.64■■□□□ 1.86
EPB41L3-204ENST00000540638 SMARCA4P51532 1647 aa26.56■■□□□ 1.84
EPB41L3-204ENST00000540638 TOP2AP11388 1531 aaKnown RBP26.46■■□□□ 1.83
EPB41L3-204ENST00000540638 CSRNP3Q8WYN3 585 aa26.45■■□□□ 1.83
EPB41L3-204ENST00000540638 SOGA1O94964 1423 aa26.44■■□□□ 1.82
EPB41L3-204ENST00000540638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.43■■□□□ 1.82
EPB41L3-204ENST00000540638 UNC13AQ9UPW8 1703 aa26.43■■□□□ 1.82
EPB41L3-204ENST00000540638 CCER1Q8TC90 406 aaPredicted RBP26.4■■□□□ 1.82
EPB41L3-204ENST00000540638 SMARCA2P51531 1590 aa26.33■■□□□ 1.81
EPB41L3-204ENST00000540638 BICRAQ9NZM4 1560 aa26.3■■□□□ 1.8
EPB41L3-204ENST00000540638 RUSC2Q8N2Y8 1516 aa26.28■■□□□ 1.8
EPB41L3-204ENST00000540638 BAZ1BQ9UIG0 1483 aaKnown RBP26.27■■□□□ 1.8
EPB41L3-204ENST00000540638 WRNQ14191 1432 aaPredicted RBP eCLIP26.23■■□□□ 1.79
EPB41L3-204ENST00000540638 ZEB1P37275 1124 aaPredicted RBP26.23■■□□□ 1.79
EPB41L3-204ENST00000540638 APLP2Q06481 763 aa26.23■■□□□ 1.79
EPB41L3-204ENST00000540638 ATAD2BQ9ULI0 1458 aa26.16■■□□□ 1.78
EPB41L3-204ENST00000540638 CEP162Q5TB80 1403 aa26.14■■□□□ 1.77
EPB41L3-204ENST00000540638 HNRNPUL2Q1KMD3 747 aaKnown RBP26.13■■□□□ 1.77
EPB41L3-204ENST00000540638 EIF4G1Q04637 1599 aaKnown RBP25.96■■□□□ 1.75
EPB41L3-204ENST00000540638 TNIKQ9UKE5 1360 aa25.94■■□□□ 1.74
EPB41L3-204ENST00000540638 ATP1B4Q9UN42 357 aaPredicted RBP25.89■■□□□ 1.73
EPB41L3-204ENST00000540638 GOLGA3Q08378 1498 aa25.89■■□□□ 1.73
EPB41L3-204ENST00000540638 EEA1Q15075 1411 aa25.85■■□□□ 1.73
EPB41L3-204ENST00000540638 SYNJ1O43426 1573 aa25.81■■□□□ 1.72
EPB41L3-204ENST00000540638 CLIP1P30622 1438 aa25.81■■□□□ 1.72
EPB41L3-204ENST00000540638 ITGAEP38570 1179 aa25.8■■□□□ 1.72
EPB41L3-204ENST00000540638 CEP164Q9UPV0 1460 aa25.73■■□□□ 1.71
EPB41L3-204ENST00000540638 RAPGEF2Q9Y4G8 1499 aa25.71■■□□□ 1.71
EPB41L3-204ENST00000540638 P3H3Q8IVL6 736 aa25.69■■□□□ 1.7
EPB41L3-204ENST00000540638 PEG3Q9GZU2 1588 aa25.66■■□□□ 1.7
EPB41L3-204ENST00000540638 NCAPD3P42695 1498 aa25.55■■□□□ 1.68
EPB41L3-204ENST00000540638 DIEXFQ68CQ4 756 aaKnown RBP25.48■■□□□ 1.67
EPB41L3-204ENST00000540638 KIF27Q86VH2 1401 aa25.47■■□□□ 1.67
EPB41L3-204ENST00000540638 KANK4Q5T7N3 995 aaPredicted RBP25.44■■□□□ 1.66
EPB41L3-204ENST00000540638 VPS8Q8N3P4 1428 aa25.42■■□□□ 1.66
EPB41L3-204ENST00000540638 YTHDC1Q96MU7 727 aaKnown RBP25.42■■□□□ 1.66
EPB41L3-204ENST00000540638 CUX2O14529 1486 aa25.41■■□□□ 1.66
EPB41L3-204ENST00000540638 CADPSQ9ULU8 1353 aa25.37■■□□□ 1.65
EPB41L3-204ENST00000540638 CUX1P39880 1505 aa25.36■■□□□ 1.65
EPB41L3-204ENST00000540638 TOP2BQ02880 1626 aa25.33■■□□□ 1.65
EPB41L3-204ENST00000540638 DNAJC5BQ9UF47 199 aa25.32■■□□□ 1.64
EPB41L3-204ENST00000540638 CFTRP13569 1480 aa25.31■■□□□ 1.64
EPB41L3-204ENST00000540638 FAM50AQ14320 339 aaKnown RBP25.31■■□□□ 1.64
EPB41L3-204ENST00000540638 HMGXB3Q12766 1538 aa25.3■■□□□ 1.64
EPB41L3-204ENST00000540638 KIF21BO75037 1637 aa25.27■■□□□ 1.64
EPB41L3-204ENST00000540638 CARMIL1Q5VZK9 1371 aa25.23■■□□□ 1.63
EPB41L3-204ENST00000540638 ZNF316A6NFI3 1004 aaPredicted RBP25.21■■□□□ 1.63
EPB41L3-204ENST00000540638 ARID3CA6NKF2 412 aa25.2■■□□□ 1.62
EPB41L3-204ENST00000540638 CC2D2AQ9P2K1 1620 aa25.2■■□□□ 1.62
EPB41L3-204ENST00000540638 NESP48681 1621 aa25.19■■□□□ 1.62
EPB41L3-204ENST00000540638 IGF1RP08069 1367 aa25.16■■□□□ 1.62
EPB41L3-204ENST00000540638 PRXQ9BXM0 1461 aa25.15■■□□□ 1.62
EPB41L3-204ENST00000540638 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
EPB41L3-204ENST00000540638 FANCD2Q9BXW9 1451 aa25.13■■□□□ 1.61
EPB41L3-204ENST00000540638 ARAP1Q96P48 1450 aa25.12■■□□□ 1.61
EPB41L3-204ENST00000540638 RAD54L2Q9Y4B4 1467 aa25.12■■□□□ 1.61
EPB41L3-204ENST00000540638 TDRD9Q8NDG6 1382 aaKnown RBP25.09■■□□□ 1.61
EPB41L3-204ENST00000540638 NEUROD1Q13562 356 aa25.05■■□□□ 1.6
EPB41L3-204ENST00000540638 BIVM-ERCC5R4GMW8 1640 aa25.04■■□□□ 1.6
EPB41L3-204ENST00000540638 CENPBP07199 599 aaPredicted RBP25.04■■□□□ 1.6
EPB41L3-204ENST00000540638 SCAF1Q9H7N4 1312 aaKnown RBP25■■□□□ 1.59
EPB41L3-204ENST00000540638 ARHGAP35Q9NRY4 1499 aa24.97■■□□□ 1.59
EPB41L3-204ENST00000540638 ERICH3Q5RHP9 1530 aa24.95■■□□□ 1.58
EPB41L3-204ENST00000540638 MIER1Q8N108 512 aa24.94■■□□□ 1.58
EPB41L3-204ENST00000540638 FHOD3Q2V2M9 1422 aa24.92■■□□□ 1.58
EPB41L3-204ENST00000540638 CCNB3Q8WWL7 1395 aa24.92■■□□□ 1.58
EPB41L3-204ENST00000540638 FBLN2P98095 1184 aa24.89■■□□□ 1.57
EPB41L3-204ENST00000540638 ACIN1Q9UKV3 1341 aaKnown RBP24.87■■□□□ 1.57
EPB41L3-204ENST00000540638 GTF3C3Q9Y5Q9 886 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 650.8 ms