RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
USP28-208ENST00000540438 SHROOM4Q9ULL8 1493 aa30.77■■■□□ 2.52
USP28-208ENST00000540438 DCAF8L2P0C7V8 631 aa30.35■■■□□ 2.45
USP28-208ENST00000540438 SUPT5HO00267 1087 aaKnown RBP30.08■■■□□ 2.41
USP28-208ENST00000540438 ZCCHC6Q5VYS8 1495 aaKnown RBP29.43■■■□□ 2.3
USP28-208ENST00000540438 CCDC180Q9P1Z9 1646 aa29.3■■■□□ 2.28
USP28-208ENST00000540438 CHIC1Q5VXU3 224 aa28.67■■■□□ 2.18
USP28-208ENST00000540438 MYO15BQ96JP2 1530 aa28.52■■■□□ 2.16
USP28-208ENST00000540438 ABCC9O60706 1549 aa28.39■■■□□ 2.14
USP28-208ENST00000540438 LOC105371045A0A1W2PR82 267 aa28.27■■■□□ 2.12
USP28-208ENST00000540438 SCRIBQ14160 1630 aa28.26■■■□□ 2.11
USP28-208ENST00000540438 EHMT2Q96KQ7 1210 aa28.19■■■□□ 2.1
USP28-208ENST00000540438 DCAF1Q9Y4B6 1507 aa28.16■■■□□ 2.1
USP28-208ENST00000540438 FAM9AQ8IZU1 332 aaPredicted RBP27.99■■■□□ 2.07
USP28-208ENST00000540438 PCGF6Q9BYE7 350 aa27.99■■■□□ 2.07
USP28-208ENST00000540438 RSF1Q96T23 1441 aaPredicted RBP27.81■■■□□ 2.04
USP28-208ENST00000540438 CECR2Q9BXF3 1484 aa27.71■■■□□ 2.03
USP28-208ENST00000540438 TRIM41Q8WV44 630 aa27.69■■■□□ 2.02
USP28-208ENST00000540438 RB1CC1Q8TDY2 1594 aa27.54■■■□□ 2
USP28-208ENST00000540438 PPARGC1BQ86YN6 1023 aaKnown RBP27.49■■□□□ 1.99
USP28-208ENST00000540438 PABPN1Q86U42 306 aaKnown RBP eCLIP27.46■■□□□ 1.99
USP28-208ENST00000540438 MROH2BQ7Z745 1585 aa27.42■■□□□ 1.98
USP28-208ENST00000540438 HRCP23327 699 aa27.38■■□□□ 1.97
USP28-208ENST00000540438 NACADO15069 1562 aa27.35■■□□□ 1.97
USP28-208ENST00000540438 WIZO95785 1651 aa27.26■■□□□ 1.95
USP28-208ENST00000540438 TTBK1Q5TCY1 1321 aaPredicted RBP27.12■■□□□ 1.93
USP28-208ENST00000540438 TRIM26Q12899 539 aaPredicted RBP27■■□□□ 1.91
USP28-208ENST00000540438 ABCC8Q09428 1581 aa26.8■■□□□ 1.88
USP28-208ENST00000540438 BAZ1AQ9NRL2 1556 aaPredicted RBP26.77■■□□□ 1.88
USP28-208ENST00000540438 CCDC88BA6NC98 1476 aa26.71■■□□□ 1.87
USP28-208ENST00000540438 UNC13AQ9UPW8 1703 aa26.7■■□□□ 1.86
USP28-208ENST00000540438 RANGAP1P46060 587 aaPredicted RBP26.67■■□□□ 1.86
USP28-208ENST00000540438 SMARCA4P51532 1647 aa26.63■■□□□ 1.85
USP28-208ENST00000540438 UBTFP17480 764 aaKnown RBP26.55■■□□□ 1.84
USP28-208ENST00000540438 SOGA1O94964 1423 aa26.55■■□□□ 1.84
USP28-208ENST00000540438 TOP2AP11388 1531 aaKnown RBP26.5■■□□□ 1.83
USP28-208ENST00000540438 RUSC2Q8N2Y8 1516 aa26.49■■□□□ 1.83
USP28-208ENST00000540438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.48■■□□□ 1.83
USP28-208ENST00000540438 SMARCA2P51531 1590 aa26.47■■□□□ 1.83
USP28-208ENST00000540438 BICRAQ9NZM4 1560 aa26.46■■□□□ 1.83
USP28-208ENST00000540438 EIF4G1Q04637 1599 aaKnown RBP26.34■■□□□ 1.81
USP28-208ENST00000540438 CSRNP3Q8WYN3 585 aa26.32■■□□□ 1.8
USP28-208ENST00000540438 CCER1Q8TC90 406 aaPredicted RBP26.22■■□□□ 1.79
USP28-208ENST00000540438 CEP162Q5TB80 1403 aa26.16■■□□□ 1.78
USP28-208ENST00000540438 WRNQ14191 1432 aaPredicted RBP eCLIP26.15■■□□□ 1.78
USP28-208ENST00000540438 ATAD2BQ9ULI0 1458 aa26.13■■□□□ 1.77
USP28-208ENST00000540438 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
USP28-208ENST00000540438 ZEB1P37275 1124 aaPredicted RBP26.01■■□□□ 1.75
USP28-208ENST00000540438 HNRNPUL2Q1KMD3 747 aaKnown RBP26.01■■□□□ 1.75
USP28-208ENST00000540438 SYNJ1O43426 1573 aa25.98■■□□□ 1.75
USP28-208ENST00000540438 TNIKQ9UKE5 1360 aa25.93■■□□□ 1.74
USP28-208ENST00000540438 GOLGA3Q08378 1498 aa25.82■■□□□ 1.72
USP28-208ENST00000540438 RAPGEF2Q9Y4G8 1499 aa25.8■■□□□ 1.72
USP28-208ENST00000540438 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
USP28-208ENST00000540438 APLP2Q06481 763 aa25.74■■□□□ 1.71
USP28-208ENST00000540438 CLIP1P30622 1438 aa25.73■■□□□ 1.71
USP28-208ENST00000540438 EEA1Q15075 1411 aa25.7■■□□□ 1.7
USP28-208ENST00000540438 CEP164Q9UPV0 1460 aa25.65■■□□□ 1.7
USP28-208ENST00000540438 ITGAEP38570 1179 aa25.59■■□□□ 1.69
USP28-208ENST00000540438 KANK4Q5T7N3 995 aaPredicted RBP25.52■■□□□ 1.68
USP28-208ENST00000540438 P3H3Q8IVL6 736 aa25.52■■□□□ 1.68
USP28-208ENST00000540438 ATP1B4Q9UN42 357 aaPredicted RBP25.5■■□□□ 1.67
USP28-208ENST00000540438 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
USP28-208ENST00000540438 DIEXFQ68CQ4 756 aaKnown RBP25.47■■□□□ 1.67
USP28-208ENST00000540438 CUX1P39880 1505 aa25.46■■□□□ 1.67
USP28-208ENST00000540438 DNAJC5BQ9UF47 199 aa25.44■■□□□ 1.66
USP28-208ENST00000540438 TOP2BQ02880 1626 aa25.42■■□□□ 1.66
USP28-208ENST00000540438 VPS8Q8N3P4 1428 aa25.41■■□□□ 1.66
USP28-208ENST00000540438 KIF21BO75037 1637 aa25.37■■□□□ 1.65
USP28-208ENST00000540438 YTHDC1Q96MU7 727 aaKnown RBP25.36■■□□□ 1.65
USP28-208ENST00000540438 SCAF1Q9H7N4 1312 aaKnown RBP25.34■■□□□ 1.65
USP28-208ENST00000540438 KIF27Q86VH2 1401 aa25.3■■□□□ 1.64
USP28-208ENST00000540438 CFTRP13569 1480 aa25.3■■□□□ 1.64
USP28-208ENST00000540438 CUX2O14529 1486 aa25.29■■□□□ 1.64
USP28-208ENST00000540438 HMGXB3Q12766 1538 aa25.26■■□□□ 1.63
USP28-208ENST00000540438 ARAP1Q96P48 1450 aa25.25■■□□□ 1.63
USP28-208ENST00000540438 PRXQ9BXM0 1461 aa25.24■■□□□ 1.63
USP28-208ENST00000540438 NEUROD1Q13562 356 aa25.22■■□□□ 1.63
USP28-208ENST00000540438 CADPSQ9ULU8 1353 aa25.22■■□□□ 1.63
USP28-208ENST00000540438 NESP48681 1621 aa25.21■■□□□ 1.63
USP28-208ENST00000540438 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
USP28-208ENST00000540438 ZNF316A6NFI3 1004 aaPredicted RBP25.18■■□□□ 1.62
USP28-208ENST00000540438 CC2D2AQ9P2K1 1620 aa25.16■■□□□ 1.62
USP28-208ENST00000540438 IGF1RP08069 1367 aa25.16■■□□□ 1.62
USP28-208ENST00000540438 RAD54L2Q9Y4B4 1467 aa25.12■■□□□ 1.61
USP28-208ENST00000540438 FGD5Q6ZNL6 1462 aa25.11■■□□□ 1.61
USP28-208ENST00000540438 CARMIL1Q5VZK9 1371 aa25.09■■□□□ 1.61
USP28-208ENST00000540438 MIER1Q8N108 512 aa25.07■■□□□ 1.6
USP28-208ENST00000540438 FAM50AQ14320 339 aaKnown RBP25.06■■□□□ 1.6
USP28-208ENST00000540438 ARHGAP35Q9NRY4 1499 aa25.06■■□□□ 1.6
USP28-208ENST00000540438 FANCD2Q9BXW9 1451 aa25.02■■□□□ 1.6
USP28-208ENST00000540438 ARID3CA6NKF2 412 aa25■■□□□ 1.59
USP28-208ENST00000540438 ACIN1Q9UKV3 1341 aaKnown RBP24.98■■□□□ 1.59
USP28-208ENST00000540438 ERICH3Q5RHP9 1530 aa24.97■■□□□ 1.59
USP28-208ENST00000540438 TDRD9Q8NDG6 1382 aaKnown RBP24.97■■□□□ 1.59
USP28-208ENST00000540438 GTF3C3Q9Y5Q9 886 aa24.95■■□□□ 1.58
USP28-208ENST00000540438 FHOD3Q2V2M9 1422 aa24.89■■□□□ 1.58
USP28-208ENST00000540438 DHX57Q6P158 1386 aaKnown RBP24.88■■□□□ 1.57
USP28-208ENST00000540438 CCNB3Q8WWL7 1395 aa24.85■■□□□ 1.57
USP28-208ENST00000540438 SIN3AQ96ST3 1273 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms