RNA–Protein interactions for RNA: ENST00000538941.6

SCAPER-203, Transcript of S-phase cyclin A associated protein in the ER, humanhuman

TSL 1 (best) BASIC

Gene SCAPER, Length 4,853 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPER-203ENST00000538941 NISCHQ9Y2I1 1504 aa12.3□□□□□ -0.44
SCAPER-203ENST00000538941 SUPT5HO00267 1087 aaKnown RBP11.33□□□□□ -0.6
SCAPER-203ENST00000538941 SHROOM4Q9ULL8 1493 aa11.24□□□□□ -0.61
SCAPER-203ENST00000538941 MYT1Q01538 1121 aa11.1□□□□□ -0.63
SCAPER-203ENST00000538941 DCAF8L2P0C7V8 631 aa11.09□□□□□ -0.63
SCAPER-203ENST00000538941 PELP1Q8IZL8 1130 aaKnown RBP11.06□□□□□ -0.64
SCAPER-203ENST00000538941 PCGF6Q9BYE7 350 aa11.06□□□□□ -0.64
SCAPER-203ENST00000538941 HRCP23327 699 aa11.04□□□□□ -0.64
SCAPER-203ENST00000538941 ZEB1P37275 1124 aaPredicted RBP10.84□□□□□ -0.67
SCAPER-203ENST00000538941 CHIC1Q5VXU3 224 aa10.75□□□□□ -0.69
SCAPER-203ENST00000538941 PPARGC1BQ86YN6 1023 aaKnown RBP10.73□□□□□ -0.69
SCAPER-203ENST00000538941 TRIM26Q12899 539 aaPredicted RBP10.71□□□□□ -0.7
SCAPER-203ENST00000538941 CENPBP07199 599 aaPredicted RBP10.62□□□□□ -0.71
SCAPER-203ENST00000538941 EHMT2Q96KQ7 1210 aa10.58□□□□□ -0.72
SCAPER-203ENST00000538941 LOC105371045A0A1W2PR82 267 aa10.55□□□□□ -0.72
SCAPER-203ENST00000538941 FAM9AQ8IZU1 332 aaPredicted RBP10.54□□□□□ -0.72
SCAPER-203ENST00000538941 TRIM41Q8WV44 630 aa10.52□□□□□ -0.72
SCAPER-203ENST00000538941 CCER1Q8TC90 406 aaPredicted RBP10.5□□□□□ -0.73
SCAPER-203ENST00000538941 DCAF1Q9Y4B6 1507 aa10.49□□□□□ -0.73
SCAPER-203ENST00000538941 CCDC180Q9P1Z9 1646 aa10.47□□□□□ -0.73
SCAPER-203ENST00000538941 MYO15BQ96JP2 1530 aa10.43□□□□□ -0.74
SCAPER-203ENST00000538941 TTBK1Q5TCY1 1321 aaPredicted RBP10.38□□□□□ -0.75
SCAPER-203ENST00000538941 ZCCHC6Q5VYS8 1495 aaKnown RBP10.38□□□□□ -0.75
SCAPER-203ENST00000538941 YTHDC1Q96MU7 727 aaKnown RBP10.29□□□□□ -0.76
SCAPER-203ENST00000538941 DIEXFQ68CQ4 756 aaKnown RBP10.28□□□□□ -0.76
SCAPER-203ENST00000538941 ACIN1Q9UKV3 1341 aaKnown RBP10.28□□□□□ -0.76
SCAPER-203ENST00000538941 SCAF1Q9H7N4 1312 aaKnown RBP10.27□□□□□ -0.76
SCAPER-203ENST00000538941 APLP2Q06481 763 aa10.26□□□□□ -0.77
SCAPER-203ENST00000538941 GTF3C3Q9Y5Q9 886 aa10.25□□□□□ -0.77
SCAPER-203ENST00000538941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.24□□□□□ -0.77
SCAPER-203ENST00000538941 ERICH6Q7L0X2 663 aa10.17□□□□□ -0.78
SCAPER-203ENST00000538941 ABCC9O60706 1549 aa10.15□□□□□ -0.78
SCAPER-203ENST00000538941 UBTFP17480 764 aaKnown RBP10.14□□□□□ -0.79
SCAPER-203ENST00000538941 NEUROD1Q13562 356 aa10.12□□□□□ -0.79
SCAPER-203ENST00000538941 ZNF316A6NFI3 1004 aaPredicted RBP10.07□□□□□ -0.8
SCAPER-203ENST00000538941 NEFLP07196 543 aa10.02□□□□□ -0.81
SCAPER-203ENST00000538941 HNRNPUL2Q1KMD3 747 aaKnown RBP10□□□□□ -0.81
SCAPER-203ENST00000538941 RANGAP1P46060 587 aaPredicted RBP9.97□□□□□ -0.81
SCAPER-203ENST00000538941 RB1CC1Q8TDY2 1594 aa9.95□□□□□ -0.82
SCAPER-203ENST00000538941 CLSPNQ9HAW4 1339 aa9.95□□□□□ -0.82
SCAPER-203ENST00000538941 NACADO15069 1562 aa9.94□□□□□ -0.82
SCAPER-203ENST00000538941 RSF1Q96T23 1441 aaPredicted RBP9.89□□□□□ -0.83
SCAPER-203ENST00000538941 SCRIBQ14160 1630 aa9.89□□□□□ -0.83
SCAPER-203ENST00000538941 MIER1Q8N108 512 aa9.83□□□□□ -0.84
SCAPER-203ENST00000538941 CSRNP3Q8WYN3 585 aa9.81□□□□□ -0.84
SCAPER-203ENST00000538941 BCANQ96GW7 911 aa9.78□□□□□ -0.84
SCAPER-203ENST00000538941 CEP162Q5TB80 1403 aa9.76□□□□□ -0.85
SCAPER-203ENST00000538941 ITGAEP38570 1179 aa9.76□□□□□ -0.85
SCAPER-203ENST00000538941 ANP32EQ9BTT0 268 aa9.71□□□□□ -0.85
SCAPER-203ENST00000538941 EEA1Q15075 1411 aa9.7□□□□□ -0.86
SCAPER-203ENST00000538941 TNIKQ9UKE5 1360 aa9.7□□□□□ -0.86
SCAPER-203ENST00000538941 ATP1B4Q9UN42 357 aaPredicted RBP9.7□□□□□ -0.86
SCAPER-203ENST00000538941 GOLGA3Q08378 1498 aa9.67□□□□□ -0.86
SCAPER-203ENST00000538941 FKBP8Q14318 412 aa9.67□□□□□ -0.86
SCAPER-203ENST00000538941 ANP32CO43423 234 aa9.67□□□□□ -0.86
SCAPER-203ENST00000538941 CDK11AQ9UQ88 783 aaPredicted RBP9.66□□□□□ -0.86
SCAPER-203ENST00000538941 SUPT16HQ9Y5B9 1047 aaKnown RBP9.66□□□□□ -0.86
SCAPER-203ENST00000538941 CLIP1P30622 1438 aa9.63□□□□□ -0.87
SCAPER-203ENST00000538941 WRNQ14191 1432 aaPredicted RBP eCLIP9.62□□□□□ -0.87
SCAPER-203ENST00000538941 RTL5Q5HYW3 569 aaPredicted RBP9.59□□□□□ -0.87
SCAPER-203ENST00000538941 PABPN1Q86U42 306 aaKnown RBP eCLIP9.59□□□□□ -0.87
SCAPER-203ENST00000538941 SLC24A1O60721 1099 aa9.58□□□□□ -0.88
SCAPER-203ENST00000538941 FAM50AQ14320 339 aaKnown RBP9.58□□□□□ -0.88
SCAPER-203ENST00000538941 MYT1LQ9UL68 1186 aa9.58□□□□□ -0.88
SCAPER-203ENST00000538941 CECR2Q9BXF3 1484 aa9.58□□□□□ -0.88
SCAPER-203ENST00000538941 CEP164Q9UPV0 1460 aa9.56□□□□□ -0.88
SCAPER-203ENST00000538941 BCL11AQ9H165 835 aa9.56□□□□□ -0.88
SCAPER-203ENST00000538941 MROH2BQ7Z745 1585 aa9.55□□□□□ -0.88
SCAPER-203ENST00000538941 DDX10Q13206 875 aaKnown RBP9.55□□□□□ -0.88
SCAPER-203ENST00000538941 SOGA1O94964 1423 aa9.54□□□□□ -0.88
SCAPER-203ENST00000538941 BAZ1AQ9NRL2 1556 aaPredicted RBP9.54□□□□□ -0.88
SCAPER-203ENST00000538941 TSHZ2Q9NRE2 1034 aa9.53□□□□□ -0.88
SCAPER-203ENST00000538941 CCDC88BA6NC98 1476 aa9.51□□□□□ -0.89
SCAPER-203ENST00000538941 ABCC8Q09428 1581 aa9.51□□□□□ -0.89
SCAPER-203ENST00000538941 TRIM52Q96A61 297 aa9.5□□□□□ -0.89
SCAPER-203ENST00000538941 VPS8Q8N3P4 1428 aa9.49□□□□□ -0.89
SCAPER-203ENST00000538941 WIZO95785 1651 aa9.49□□□□□ -0.89
SCAPER-203ENST00000538941 HNRNPUQ00839 825 aaKnown RBP eCLIP9.47□□□□□ -0.89
SCAPER-203ENST00000538941 DAXXQ9UER7 740 aaPredicted RBP9.46□□□□□ -0.9
SCAPER-203ENST00000538941 TONSLQ96HA7 1378 aa9.45□□□□□ -0.9
SCAPER-203ENST00000538941 ANP32AP39687 249 aaKnown RBP9.45□□□□□ -0.9
SCAPER-203ENST00000538941 RBM19Q9Y4C8 960 aaKnown RBP9.44□□□□□ -0.9
SCAPER-203ENST00000538941 TOP2AP11388 1531 aaKnown RBP9.43□□□□□ -0.9
SCAPER-203ENST00000538941 POLR3GLQ9BT43 218 aa9.42□□□□□ -0.9
SCAPER-203ENST00000538941 PRKCSHP14314 528 aaPredicted RBP9.39□□□□□ -0.91
SCAPER-203ENST00000538941 CCER2I3L3R5 266 aa9.39□□□□□ -0.91
SCAPER-203ENST00000538941 CNGB1Q14028 1251 aaPredicted RBP9.39□□□□□ -0.91
SCAPER-203ENST00000538941 DHX57Q6P158 1386 aaKnown RBP9.39□□□□□ -0.91
SCAPER-203ENST00000538941 CCNB3Q8WWL7 1395 aa9.39□□□□□ -0.91
SCAPER-203ENST00000538941 IRX6P78412 446 aaPredicted RBP9.38□□□□□ -0.91
SCAPER-203ENST00000538941 HIRIP3Q9BW71 556 aaPredicted RBP9.37□□□□□ -0.91
SCAPER-203ENST00000538941 NBR1Q14596 966 aa9.36□□□□□ -0.91
SCAPER-203ENST00000538941 BAZ1BQ9UIG0 1483 aaKnown RBP9.36□□□□□ -0.91
SCAPER-203ENST00000538941 RUSC2Q8N2Y8 1516 aa9.35□□□□□ -0.91
SCAPER-203ENST00000538941 TIMELESSQ9UNS1 1208 aa9.34□□□□□ -0.91
SCAPER-203ENST00000538941 FAM9BQ8IZU0 186 aa9.33□□□□□ -0.92
SCAPER-203ENST00000538941 PPP4R2Q9NY27 417 aa9.33□□□□□ -0.92
SCAPER-203ENST00000538941 ZBTB47Q9UFB7 747 aaPredicted RBP9.33□□□□□ -0.92
SCAPER-203ENST00000538941 P3H3Q8IVL6 736 aa9.32□□□□□ -0.92
SCAPER-203ENST00000538941 GLIPR1L2Q4G1C9 344 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms