RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 NISCHQ9Y2I1 1504 aa17.75■□□□□ 0.43
UBE3B-208ENST00000538070 SHROOM4Q9ULL8 1493 aa15.73■□□□□ 0.11
UBE3B-208ENST00000538070 DCAF8L2P0C7V8 631 aa15.66■□□□□ 0.1
UBE3B-208ENST00000538070 SUPT5HO00267 1087 aaKnown RBP15.42■□□□□ 0.06
UBE3B-208ENST00000538070 ZCCHC6Q5VYS8 1495 aaKnown RBP14.91□□□□□ -0.02
UBE3B-208ENST00000538070 CCDC180Q9P1Z9 1646 aa14.84□□□□□ -0.03
UBE3B-208ENST00000538070 CHIC1Q5VXU3 224 aa14.61□□□□□ -0.07
UBE3B-208ENST00000538070 ABCC9O60706 1549 aa14.51□□□□□ -0.09
UBE3B-208ENST00000538070 EHMT2Q96KQ7 1210 aa14.48□□□□□ -0.09
UBE3B-208ENST00000538070 LOC105371045A0A1W2PR82 267 aa14.41□□□□□ -0.1
UBE3B-208ENST00000538070 MYO15BQ96JP2 1530 aa14.4□□□□□ -0.1
UBE3B-208ENST00000538070 SCRIBQ14160 1630 aa14.37□□□□□ -0.11
UBE3B-208ENST00000538070 FAM9AQ8IZU1 332 aaPredicted RBP14.37□□□□□ -0.11
UBE3B-208ENST00000538070 PCGF6Q9BYE7 350 aa14.31□□□□□ -0.12
UBE3B-208ENST00000538070 DCAF1Q9Y4B6 1507 aa14.27□□□□□ -0.13
UBE3B-208ENST00000538070 TRIM41Q8WV44 630 aa14.21□□□□□ -0.13
UBE3B-208ENST00000538070 RSF1Q96T23 1441 aaPredicted RBP14.12□□□□□ -0.15
UBE3B-208ENST00000538070 PABPN1Q86U42 306 aaKnown RBP eCLIP14.07□□□□□ -0.16
UBE3B-208ENST00000538070 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
UBE3B-208ENST00000538070 PPARGC1BQ86YN6 1023 aaKnown RBP14.01□□□□□ -0.17
UBE3B-208ENST00000538070 HRCP23327 699 aa13.95□□□□□ -0.18
UBE3B-208ENST00000538070 RB1CC1Q8TDY2 1594 aa13.94□□□□□ -0.18
UBE3B-208ENST00000538070 TTBK1Q5TCY1 1321 aaPredicted RBP13.93□□□□□ -0.18
UBE3B-208ENST00000538070 NACADO15069 1562 aa13.92□□□□□ -0.18
UBE3B-208ENST00000538070 MROH2BQ7Z745 1585 aa13.9□□□□□ -0.18
UBE3B-208ENST00000538070 TRIM26Q12899 539 aaPredicted RBP13.81□□□□□ -0.2
UBE3B-208ENST00000538070 WIZO95785 1651 aa13.8□□□□□ -0.2
UBE3B-208ENST00000538070 RANGAP1P46060 587 aaPredicted RBP13.73□□□□□ -0.21
UBE3B-208ENST00000538070 UBTFP17480 764 aaKnown RBP13.67□□□□□ -0.22
UBE3B-208ENST00000538070 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
UBE3B-208ENST00000538070 ABCC8Q09428 1581 aa13.59□□□□□ -0.23
UBE3B-208ENST00000538070 CCDC88BA6NC98 1476 aa13.57□□□□□ -0.24
UBE3B-208ENST00000538070 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.53□□□□□ -0.24
UBE3B-208ENST00000538070 SMARCA4P51532 1647 aa13.5□□□□□ -0.25
UBE3B-208ENST00000538070 SOGA1O94964 1423 aa13.49□□□□□ -0.25
UBE3B-208ENST00000538070 CCER1Q8TC90 406 aaPredicted RBP13.48□□□□□ -0.25
UBE3B-208ENST00000538070 CSRNP3Q8WYN3 585 aa13.47□□□□□ -0.25
UBE3B-208ENST00000538070 TOP2AP11388 1531 aaKnown RBP13.45□□□□□ -0.26
UBE3B-208ENST00000538070 UNC13AQ9UPW8 1703 aa13.44□□□□□ -0.26
UBE3B-208ENST00000538070 RUSC2Q8N2Y8 1516 aa13.42□□□□□ -0.26
UBE3B-208ENST00000538070 SMARCA2P51531 1590 aa13.41□□□□□ -0.26
UBE3B-208ENST00000538070 ZEB1P37275 1124 aaPredicted RBP13.38□□□□□ -0.27
UBE3B-208ENST00000538070 BICRAQ9NZM4 1560 aa13.37□□□□□ -0.27
UBE3B-208ENST00000538070 HNRNPUL2Q1KMD3 747 aaKnown RBP13.35□□□□□ -0.27
UBE3B-208ENST00000538070 WRNQ14191 1432 aaPredicted RBP eCLIP13.34□□□□□ -0.27
UBE3B-208ENST00000538070 BAZ1BQ9UIG0 1483 aaKnown RBP13.34□□□□□ -0.27
UBE3B-208ENST00000538070 APLP2Q06481 763 aa13.33□□□□□ -0.28
UBE3B-208ENST00000538070 CEP162Q5TB80 1403 aa13.33□□□□□ -0.28
UBE3B-208ENST00000538070 ATAD2BQ9ULI0 1458 aa13.29□□□□□ -0.28
UBE3B-208ENST00000538070 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
UBE3B-208ENST00000538070 TNIKQ9UKE5 1360 aa13.22□□□□□ -0.29
UBE3B-208ENST00000538070 ATP1B4Q9UN42 357 aaPredicted RBP13.18□□□□□ -0.3
UBE3B-208ENST00000538070 GOLGA3Q08378 1498 aa13.17□□□□□ -0.3
UBE3B-208ENST00000538070 ITGAEP38570 1179 aa13.17□□□□□ -0.3
UBE3B-208ENST00000538070 SYNJ1O43426 1573 aa13.15□□□□□ -0.3
UBE3B-208ENST00000538070 CLIP1P30622 1438 aa13.14□□□□□ -0.31
UBE3B-208ENST00000538070 EEA1Q15075 1411 aa13.13□□□□□ -0.31
UBE3B-208ENST00000538070 RAPGEF2Q9Y4G8 1499 aa13.11□□□□□ -0.31
UBE3B-208ENST00000538070 P3H3Q8IVL6 736 aa13.1□□□□□ -0.31
UBE3B-208ENST00000538070 CEP164Q9UPV0 1460 aa13.09□□□□□ -0.31
UBE3B-208ENST00000538070 DIEXFQ68CQ4 756 aaKnown RBP13.04□□□□□ -0.32
UBE3B-208ENST00000538070 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
UBE3B-208ENST00000538070 YTHDC1Q96MU7 727 aaKnown RBP13.02□□□□□ -0.32
UBE3B-208ENST00000538070 KANK4Q5T7N3 995 aaPredicted RBP13□□□□□ -0.33
UBE3B-208ENST00000538070 NCAPD3P42695 1498 aa12.96□□□□□ -0.33
UBE3B-208ENST00000538070 VPS8Q8N3P4 1428 aa12.95□□□□□ -0.34
UBE3B-208ENST00000538070 KIF27Q86VH2 1401 aa12.94□□□□□ -0.34
UBE3B-208ENST00000538070 CUX2O14529 1486 aa12.92□□□□□ -0.34
UBE3B-208ENST00000538070 DNAJC5BQ9UF47 199 aa12.91□□□□□ -0.34
UBE3B-208ENST00000538070 CUX1P39880 1505 aa12.91□□□□□ -0.34
UBE3B-208ENST00000538070 FAM50AQ14320 339 aaKnown RBP12.9□□□□□ -0.35
UBE3B-208ENST00000538070 ZNF316A6NFI3 1004 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-208ENST00000538070 TOP2BQ02880 1626 aa12.89□□□□□ -0.35
UBE3B-208ENST00000538070 CADPSQ9ULU8 1353 aa12.87□□□□□ -0.35
UBE3B-208ENST00000538070 KIF21BO75037 1637 aa12.87□□□□□ -0.35
UBE3B-208ENST00000538070 SCAF1Q9H7N4 1312 aaKnown RBP12.87□□□□□ -0.35
UBE3B-208ENST00000538070 CFTRP13569 1480 aa12.86□□□□□ -0.35
UBE3B-208ENST00000538070 ARID3CA6NKF2 412 aa12.85□□□□□ -0.35
UBE3B-208ENST00000538070 NEUROD1Q13562 356 aa12.84□□□□□ -0.35
UBE3B-208ENST00000538070 CARMIL1Q5VZK9 1371 aa12.83□□□□□ -0.36
UBE3B-208ENST00000538070 HMGXB3Q12766 1538 aa12.83□□□□□ -0.36
UBE3B-208ENST00000538070 NESP48681 1621 aa12.82□□□□□ -0.36
UBE3B-208ENST00000538070 ARAP1Q96P48 1450 aa12.81□□□□□ -0.36
UBE3B-208ENST00000538070 IGF1RP08069 1367 aa12.81□□□□□ -0.36
UBE3B-208ENST00000538070 PRXQ9BXM0 1461 aa12.81□□□□□ -0.36
UBE3B-208ENST00000538070 RAD54L2Q9Y4B4 1467 aa12.79□□□□□ -0.36
UBE3B-208ENST00000538070 CC2D2AQ9P2K1 1620 aa12.79□□□□□ -0.36
UBE3B-208ENST00000538070 CENPBP07199 599 aaPredicted RBP12.78□□□□□ -0.36
UBE3B-208ENST00000538070 FGD5Q6ZNL6 1462 aa12.78□□□□□ -0.36
UBE3B-208ENST00000538070 MIER1Q8N108 512 aa12.78□□□□□ -0.36
UBE3B-208ENST00000538070 TDRD9Q8NDG6 1382 aaKnown RBP12.76□□□□□ -0.37
UBE3B-208ENST00000538070 FANCD2Q9BXW9 1451 aa12.76□□□□□ -0.37
UBE3B-208ENST00000538070 ACIN1Q9UKV3 1341 aaKnown RBP12.75□□□□□ -0.37
UBE3B-208ENST00000538070 GTF3C3Q9Y5Q9 886 aa12.75□□□□□ -0.37
UBE3B-208ENST00000538070 BIVM-ERCC5R4GMW8 1640 aa12.74□□□□□ -0.37
UBE3B-208ENST00000538070 ARHGAP35Q9NRY4 1499 aa12.72□□□□□ -0.37
UBE3B-208ENST00000538070 CCNB3Q8WWL7 1395 aa12.7□□□□□ -0.38
UBE3B-208ENST00000538070 FHOD3Q2V2M9 1422 aa12.7□□□□□ -0.38
UBE3B-208ENST00000538070 ERICH3Q5RHP9 1530 aa12.69□□□□□ -0.38
UBE3B-208ENST00000538070 HIRIP3Q9BW71 556 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms